Magnesium in the structure of Crystal Structure Of The E. Coli Ribosome Bound to Chloramphenicol. This File Contains The 30S Subunit of the First 70S Ribosome. (pdb 3ofa)

The binding sites of Magnesium atom in the structure of Crystal Structure Of The E. Coli Ribosome Bound to Chloramphenicol. This File Contains The 30S Subunit of the First 70S Ribosome. (pdb code 3ofa). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 3ofa structure was solved by J.A.DUNKLE, L.XIONG, A.S.MANKIN, J.H.D.CATE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 82.2-3.2 Space group P212121 a (A) 211.456 b (A) 434.084 c (A) 621.233 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.1 Rfree (%) 25.2 Magnesium Binding Sites: Magnesium binding site 1 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G258, A: G259, A: G260, T: Asn77, A: Hoh1576, A: Hoh1577, A: Hoh1578, A: Hoh1579, A: Hoh1580, A: Hoh1581, A: Hoh1682, A: Hoh1685, conact list: Atom Atom Distance (A) Mg OP2 A:G258 4.59 Mg N7 A:G259 4.60 Mg OP2 A:G259 3.98 Mg O6 A:G260 4.23 Mg OD1 T:Asn77 4.78 Mg O A:Hoh1576 2.18 Mg O A:Hoh1577 2.18 Mg O A:Hoh1578 2.18 Mg O A:Hoh1579 2.18 Mg O A:Hoh1580 2.18 Mg O A:Hoh1581 2.18 Mg O A:Hoh1682 4.81 Mg O A:Hoh1685 4.29 interactive model: Magnesium binding site 2 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A315, A: G319, A: A329, A: Hoh1582, A: Hoh1583, A: Hoh1584, A: Hoh1585, A: Hoh1586, A: Hoh1587, conact list: Atom Atom Distance (A) Mg OP1 A:A315 3.86 Mg P A:A315 4.79 Mg OP2 A:A315 4.71 Mg C8 A:G319 4.90 Mg N7 A:G319 4.12 Mg OP1 A:A329 4.87 Mg OP2 A:A329 4.14 Mg O A:Hoh1582 2.18 Mg O A:Hoh1583 2.18 Mg O A:Hoh1584 2.18 Mg O A:Hoh1585 2.18 Mg O A:Hoh1586 2.19 Mg O A:Hoh1587 2.18 interactive model: Magnesium binding site 3 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G361, A: G362, L: Arg30, A: Hoh1588, A: Hoh1589, A: Hoh1590, A: Hoh1591, L: Hoh124, conact list: Atom Atom Distance (A) Mg C8 A:G361 4.89 Mg N7 A:G361 4.67 Mg OP2 A:G361 4.77 Mg N9 A:G362 4.72 Mg C8 A:G362 3.52 Mg C6 A:G362 4.12 Mg C5 A:G362 3.68 Mg N7 A:G362 2.68 Mg C4 A:G362 4.80 Mg OP2 A:G362 4.57 Mg O6 A:G362 3.83 Mg NH2 L:Arg30 4.96 Mg NH1 L:Arg30 4.36 Mg O A:Hoh1588 2.08 Mg O A:Hoh1589 2.08 Mg O A:Hoh1590 2.08 Mg O A:Hoh1591 2.08 Mg O L:Hoh124 2.08 interactive model: Magnesium binding site 4 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A415, A: G416, A: G417, A: C418, A: G425, A: U426, A: Hoh1592, A: Hoh1593, A: Hoh1594, A: Hoh1595, A: Hoh1596, A: Hoh1597, conact list: Atom Atom Distance (A) Mg OP2 A:A415 4.40 Mg N7 A:G416 4.41 Mg O6 A:G416 4.68 Mg N7 A:G417 4.88 Mg O6 A:G417 4.38 Mg N4 A:C418 4.36 Mg O6 A:G425 4.76 Mg O4 A:U426 4.50 Mg O A:Hoh1592 2.18 Mg O A:Hoh1593 2.18 Mg O A:Hoh1594 2.18 Mg O A:Hoh1595 2.18 Mg O A:Hoh1596 2.18 Mg O A:Hoh1597 2.18 interactive model: Magnesium binding site 5 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G506, A: C507, A: U508, A: A509, A: A510, A: Hoh1598, A: Hoh1599, A: Hoh1600, A: Hoh1601, conact list: Atom Atom Distance (A) Mg OP1 A:G506 3.94 Mg P A:G506 4.64 Mg OP2 A:G506 4.41 Mg OP2 A:C507 4.46 Mg C3' A:U508 4.58 Mg O3' A:U508 3.49 Mg C2' A:U508 4.62 Mg O2' A:U508 3.96 Mg C3' A:A509 4.37 Mg P A:A509 3.58 Mg O3' A:A509 4.76 Mg OP2 A:A509 2.89 Mg C5' A:A509 4.72 Mg O5' A:A509 3.63 Mg OP1 A:A510 4.69 Mg C8 A:A510 4.01 Mg P A:A510 3.81 Mg N7 A:A510 3.89 Mg OP2 A:A510 2.40 Mg O5' A:A510 4.24 Mg O A:Hoh1598 2.07 Mg O A:Hoh1599 2.07 Mg O A:Hoh1600 2.07 Mg O A:Hoh1601 2.07 interactive model: Magnesium binding site 6 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C401, A: G402, A: C403, A: A546, A: A547, A: G548, A: Hoh1602, A: Hoh1603, A: Hoh1604, A: Hoh1605, A: Hoh1606, conact list: Atom Atom Distance (A) Mg C5 A:C401 4.80 Mg C4 A:C401 4.97 Mg N4 A:C401 4.71 Mg C8 A:G402 4.97 Mg N7 A:G402 4.18 Mg O6 A:G402 4.99 Mg N4 A:C403 4.30 Mg O3' A:A546 4.53 Mg OP1 A:A547 2.33 Mg P A:A547 3.77 Mg OP2 A:A547 4.81 Mg C5' A:A547 3.96 Mg O5' A:A547 4.35 Mg OP1 A:G548 3.78 Mg P A:G548 4.82 Mg O5' A:G548 4.63 Mg O A:Hoh1602 2.08 Mg O A:Hoh1603 2.08 Mg O A:Hoh1604 2.08 Mg O A:Hoh1605 2.08 Mg O A:Hoh1606 2.08 interactive model: Magnesium binding site 7 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G557, A: G558, A: A559, A: A560, A: U562, A: A563, A: G566, A: Hoh1607, A: Hoh1608, A: Hoh1609, A: Hoh1610, A: Hoh1611, A: Hoh1720, conact list: Atom Atom Distance (A) Mg OP1 A:G557 4.20 Mg OP2 A:G558 4.77 Mg O3' A:A559 3.93 Mg O2' A:A559 4.33 Mg OP1 A:A560 4.97 Mg P A:A560 3.92 Mg OP2 A:A560 2.70 Mg C5' A:A560 4.69 Mg O5' A:A560 4.85 Mg OP1 A:U562 4.08 Mg OP1 A:A563 4.19 Mg N2 A:G566 3.62 Mg C2 A:G566 4.41 Mg N1 A:G566 4.16 Mg O A:Hoh1607 2.08 Mg O A:Hoh1608 2.07 Mg O A:Hoh1609 2.08 Mg O A:Hoh1610 2.08 Mg O A:Hoh1611 2.08 Mg O A:Hoh1720 4.82 interactive model: Magnesium binding site 8 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U571, A: A572, A: A573, A: A574, A: A819, A: Hoh1612, A: Hoh1613, A: Hoh1614, conact list: Atom Atom Distance (A) Mg OP1 A:U571 3.82 Mg P A:U571 4.45 Mg OP2 A:U571 4.55 Mg C5' A:U571 4.81 Mg O5' A:U571 4.47 Mg OP1 A:A572 4.88 Mg C3' A:A572 4.98 Mg P A:A572 4.20 Mg O3' A:A572 4.99 Mg OP2 A:A572 2.90 Mg C5' A:A572 3.89 Mg O5' A:A572 4.56 Mg OP1 A:A573 4.46 Mg P A:A573 3.96 Mg OP2 A:A573 2.63 Mg O5' A:A573 4.90 Mg OP1 A:A574 4.55 Mg P A:A574 4.03 Mg OP2 A:A574 2.77 Mg O5' A:A574 4.56 Mg N3 A:A819 4.60 Mg C2 A:A819 3.96 Mg N1 A:A819 4.49 Mg O A:Hoh1612 2.18 Mg O A:Hoh1613 2.18 Mg O A:Hoh1614 2.19 interactive model: Magnesium binding site 9 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G575, A: C576, A: G577, A: C578, A: C817, A: U820, A: G821, A: Hoh1615, A: Hoh1616, A: Hoh1617, A: Hoh1618, A: Hoh1619, conact list: Atom Atom Distance (A) Mg O3' A:G575 4.23 Mg O2' A:G575 3.92 Mg P A:C576 4.68 Mg OP2 A:C576 3.78 Mg C3' A:G577 4.93 Mg O3' A:G577 3.55 Mg OP1 A:C578 2.46 Mg P A:C578 3.54 Mg OP2 A:C578 4.64 Mg C5' A:C578 4.64 Mg O5' A:C578 4.63 Mg OP1 A:C817 4.95 Mg P A:C817 4.82 Mg OP2 A:C817 3.87 Mg OP1 A:U820 3.91 Mg C5' A:G821 4.85 Mg C4' A:G821 4.89 Mg O A:Hoh1615 2.07 Mg O A:Hoh1616 2.07 Mg O A:Hoh1617 2.08 Mg O A:Hoh1618 2.08 Mg O A:Hoh1619 2.08 interactive model: Magnesium binding site 10 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G592, A: U593, A: G645, A: G646, A: C647, A: Hoh1620, A: Hoh1621, A: Hoh1622, A: Hoh1623, A: Hoh1624, A: Hoh1625, conact list: Atom Atom Distance (A) Mg O6 A:G592 4.85 Mg O4 A:U593 4.48 Mg N7 A:G645 4.68 Mg O6 A:G645 4.60 Mg O6 A:G646 4.90 Mg N4 A:C647 4.70 Mg O A:Hoh1620 2.18 Mg O A:Hoh1621 2.18 Mg O A:Hoh1622 2.18 Mg O A:Hoh1623 2.18 Mg O A:Hoh1624 2.18 Mg O A:Hoh1625 2.18 interactive model: Magnesium binding site 11 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C770, A: G771, A: U772, A: G773, A: G803, A: U804, A: Hoh1626, A: Hoh1627, A: Hoh1628, A: Hoh1629, A: Hoh1630, A: Hoh1631, conact list: Atom Atom Distance (A) Mg C5 A:C770 4.65 Mg N4 A:C770 4.73 Mg C5 A:G771 4.96 Mg N7 A:G771 4.24 Mg O6 A:G771 4.40 Mg O4 A:U772 4.05 Mg O6 A:G773 4.65 Mg OP1 A:G803 4.50 Mg OP2 A:U804 4.93 Mg O A:Hoh1626 2.18 Mg O A:Hoh1627 2.18 Mg O A:Hoh1628 2.18 Mg O A:Hoh1629 2.18 Mg O A:Hoh1630 2.18 Mg O A:Hoh1631 2.18 interactive model: Magnesium binding site 12 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G577, A: U813, A: A814, A: A815, A: A816, A: Hoh1632, A: Hoh1633, A: Hoh1634, A: Hoh1635, A: Hoh1636, conact list: Atom Atom Distance (A) Mg OP1 A:G577 3.77 Mg P A:G577 4.61 Mg OP2 A:G577 4.47 Mg C3' A:U813 4.71 Mg O3' A:U813 4.62 Mg OP1 A:A814 3.64 Mg P A:A814 3.53 Mg OP2 A:A814 2.54 Mg C5' A:A814 4.57 Mg O5' A:A814 4.62 Mg OP2 A:A815 4.74 Mg N6 A:A816 4.77 Mg N7 A:A816 4.50 Mg O A:Hoh1632 2.08 Mg O A:Hoh1633 2.08 Mg O A:Hoh1634 2.08 Mg O A:Hoh1635 2.08 Mg O A:Hoh1636 2.08 interactive model: Magnesium binding site 13 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G890, A: U891, A: A892, A: G903, A: U904, A: U905, A: A906, A: Hoh1637, A: Hoh1638, A: Hoh1639, A: Hoh1640, A: Hoh1641, conact list: Atom Atom Distance (A) Mg O3' A:G890 4.82 Mg O2' A:G890 4.96 Mg OP1 A:U891 3.93 Mg P A:U891 3.38 Mg OP2 A:U891 2.48 Mg C5' A:U891 4.64 Mg O5' A:U891 3.45 Mg OP2 A:A892 3.95 Mg OP2 A:G903 4.91 Mg C4 A:U904 4.81 Mg O4 A:U904 4.12 Mg O4 A:U905 3.97 Mg C2 A:A906 4.53 Mg C6 A:A906 4.43 Mg N1 A:A906 3.77 Mg N6 A:A906 4.32 Mg O A:Hoh1637 2.09 Mg O A:Hoh1638 2.08 Mg O A:Hoh1639 2.08 Mg O A:Hoh1640 2.08 Mg O A:Hoh1641 2.08 interactive model: Magnesium binding site 14 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G933, A: C934, A: U1345, A: Hoh1642, A: Hoh1643, A: Hoh1644, A: Hoh1645, A: Hoh1646, conact list: Atom Atom Distance (A) Mg O3' A:G933 4.39 Mg OP1 A:C934 2.24 Mg P A:C934 3.70 Mg OP2 A:C934 4.72 Mg C5' A:C934 4.45 Mg O5' A:C934 4.44 Mg OP1 A:U1345 4.70 Mg OP2 A:U1345 4.83 Mg O A:Hoh1642 2.08 Mg O A:Hoh1643 2.08 Mg O A:Hoh1644 2.08 Mg O A:Hoh1645 2.08 Mg O A:Hoh1646 2.08 interactive model: Magnesium binding site 15 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C936, A: A937, A: A938, A: G939, A: Hoh1647, A: Hoh1648, A: Hoh1649, A: Hoh1650, A: Hoh1651, conact list: Atom Atom Distance (A) Mg C3' A:C936 4.78 Mg O3' A:C936 4.66 Mg C5' A:C936 4.83 Mg O5' A:C936 4.98 Mg OP1 A:A937 4.12 Mg C8 A:A937 4.93 Mg P A:A937 3.48 Mg N7 A:A937 4.93 Mg OP2 A:A937 2.24 Mg O5' A:A937 3.99 Mg N6 A:A938 4.67 Mg N7 A:A938 4.55 Mg N7 A:G939 4.85 Mg O6 A:G939 4.47 Mg O A:Hoh1647 2.08 Mg O A:Hoh1648 2.08 Mg O A:Hoh1649 2.08 Mg O A:Hoh1650 2.08 Mg O A:Hoh1651 2.07 interactive model: Magnesium binding site 16 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C980, A: C1359, A: A1360, A: G1361, N: Gln59, N: Arg60, A: Hoh1652, A: Hoh1653, N: Hoh102, N: Hoh103, N: Hoh104, N: Hoh105, conact list: Atom Atom Distance (A) Mg N3 A:C980 4.16 Mg C2 A:C980 4.73 Mg O2 A:C980 4.34 Mg O3' A:C1359 4.10 Mg C5' A:C1359 4.86 Mg C4' A:C1359 4.91 Mg OP1 A:A1360 4.19 Mg P A:A1360 4.84 Mg N7 A:A1360 4.68 Mg O6 A:G1361 4.52 Mg O N:Gln59 3.63 Mg C N:Gln59 4.77 Mg O N:Arg60 4.53 Mg CD N:Arg60 4.62 Mg NH1 N:Arg60 4.15 Mg CA N:Arg60 4.71 Mg O A:Hoh1652 2.18 Mg O A:Hoh1653 2.18 Mg O N:Hoh102 2.18 Mg O N:Hoh103 2.18 Mg O N:Hoh104 2.18 Mg O N:Hoh105 2.18 interactive model: Magnesium binding site 17 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1053, A: C1054, A: A1196, A: A1197, A: G1198, A: Hoh1659, A: Hoh1660, A: Hoh1661, A: Hoh1662, conact list: Atom Atom Distance (A) Mg O2' A:G1053 4.29 Mg OP1 A:C1054 4.12 Mg P A:C1054 3.77 Mg OP2 A:C1054 2.63 Mg O5' A:C1054 4.44 Mg O3' A:A1196 4.19 Mg O2' A:A1196 3.85 Mg N9 A:A1197 4.98 Mg OP1 A:A1197 4.72 Mg C8 A:A1197 4.25 Mg C5 A:A1197 4.48 Mg P A:A1197 3.47 Mg N7 A:A1197 3.92 Mg OP2 A:A1197 2.30 Mg C5' A:A1197 4.85 Mg O5' A:A1197 3.48 Mg C8 A:G1198 4.92 Mg N7 A:G1198 4.23 Mg OP2 A:G1198 4.76 Mg O A:Hoh1659 2.07 Mg O A:Hoh1660 2.06 Mg O A:Hoh1661 2.07 Mg O A:Hoh1662 2.07 interactive model: Magnesium binding site 18 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1077, A: G1079, A: Hoh1663, A: Hoh1664, A: Hoh1665, A: Hoh1666, A: Hoh1667, A: Hoh1668, conact list: Atom Atom Distance (A) Mg C8 A:G1077 4.86 Mg C6 A:G1077 4.24 Mg C5 A:G1077 4.33 Mg N7 A:G1077 3.86 Mg O6 A:G1077 3.64 Mg OP1 A:G1079 2.98 Mg P A:G1079 4.24 Mg OP2 A:G1079 4.62 Mg O A:Hoh1663 2.18 Mg O A:Hoh1664 2.18 Mg O A:Hoh1665 2.18 Mg O A:Hoh1666 2.18 Mg O A:Hoh1667 2.18 Mg O A:Hoh1668 2.18 interactive model: Magnesium binding site 19 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1242, A: C1243, A: C1303, A: G1304, A: G1305, A: Hoh1669, A: Hoh1670, A: Hoh1671, A: Hoh1672, conact list: Atom Atom Distance (A) Mg O3' A:G1242 4.69 Mg O2' A:G1242 4.36 Mg C5' A:C1243 4.98 Mg OP1 A:C1303 2.55 Mg C3' A:C1303 4.67 Mg P A:C1303 3.79 Mg O3' A:C1303 4.79 Mg OP2 A:C1303 4.38 Mg O5' A:C1303 4.32 Mg OP1 A:G1304 4.77 Mg P A:G1304 3.97 Mg OP2 A:G1304 2.51 Mg O5' A:G1304 4.71 Mg N7 A:G1305 4.71 Mg O6 A:G1305 4.62 Mg O A:Hoh1669 2.07 Mg O A:Hoh1670 2.07 Mg O A:Hoh1671 2.07 Mg O A:Hoh1672 2.07 interactive model: Magnesium binding site 20 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1415, A: G1416, A: G1417, A: G1482, A: Hoh1673, A: Hoh1674, A: Hoh1675, A: Hoh1676, A: Hoh1677, conact list: Atom Atom Distance (A) Mg OP2 A:G1415 4.47 Mg N7 A:G1416 4.25 Mg O6 A:G1416 4.27 Mg C6 A:G1417 3.37 Mg N1 A:G1417 3.98 Mg C5 A:G1417 4.48 Mg N7 A:G1417 4.92 Mg O6 A:G1417 2.31 Mg C6 A:G1482 4.67 Mg C5 A:G1482 4.85 Mg N7 A:G1482 4.54 Mg O6 A:G1482 4.12 Mg O A:Hoh1673 2.08 Mg O A:Hoh1674 2.07 Mg O A:Hoh1675 2.08 Mg O A:Hoh1676 2.08 Mg O A:Hoh1677 2.08 interactive model: Magnesium binding site 21 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1499, A: A1500, A: C1501, A: G1504, A: G1505, A: U1506, A: A1507, A: A1508, A: Hoh1678, A: Hoh1679, A: Hoh1680, conact list: Atom Atom Distance (A) Mg O3' A:A1499 4.74 Mg OP1 A:A1500 2.57 Mg P A:A1500 3.70 Mg OP2 A:A1500 3.94 Mg O5' A:A1500 4.82 Mg OP2 A:C1501 4.96 Mg OP1 A:G1504 4.23 Mg C3' A:G1504 4.36 Mg O3' A:G1504 4.59 Mg OP1 A:G1505 2.38 Mg P A:G1505 3.81 Mg OP2 A:G1505 4.88 Mg C5' A:G1505 3.86 Mg O5' A:G1505 4.30 Mg C3' A:U1506 4.49 Mg O3' A:U1506 4.96 Mg C2' A:U1506 4.05 Mg O2' A:U1506 4.15 Mg C3' A:A1507 4.74 Mg O3' A:A1507 3.47 Mg OP1 A:A1508 2.34 Mg P A:A1508 3.42 Mg OP2 A:A1508 4.43 Mg C5' A:A1508 4.72 Mg O5' A:A1508 4.59 Mg O A:Hoh1678 2.18 Mg O A:Hoh1679 2.18 Mg O A:Hoh1680 2.18 interactive model: Magnesium binding site 22 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G257, A: G258, A: G259, A: G266, A: Hoh1578, A: Hoh1681, A: Hoh1682, A: Hoh1683, A: Hoh1684, A: Hoh1685, A: Hoh1686, conact list: Atom Atom Distance (A) Mg C6 A:G257 4.69 Mg C5 A:G257 4.73 Mg N7 A:G257 4.37 Mg O6 A:G257 4.25 Mg N7 A:G258 4.86 Mg O6 A:G258 4.70 Mg C6 A:G259 4.93 Mg O6 A:G259 3.85 Mg OP2 A:G266 4.94 Mg O A:Hoh1578 3.80 Mg O A:Hoh1681 2.18 Mg O A:Hoh1682 2.18 Mg O A:Hoh1683 2.18 Mg O A:Hoh1684 2.18 Mg O A:Hoh1685 2.18 Mg O A:Hoh1686 2.18 interactive model: Magnesium binding site 23 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A781, A: U798, A: G799, A: G800, A: Hoh1687, A: Hoh1688, A: Hoh1689, A: Hoh1690, A: Hoh1691, A: Hoh1692, conact list: Atom Atom Distance (A) Mg OP2 A:A781 4.72 Mg O4 A:U798 4.56 Mg N7 A:G799 4.70 Mg O6 A:G799 4.82 Mg C6 A:G800 4.53 Mg N1 A:G800 4.78 Mg O6 A:G800 3.91 Mg O A:Hoh1687 2.18 Mg O A:Hoh1688 2.18 Mg O A:Hoh1689 2.18 Mg O A:Hoh1690 2.18 Mg O A:Hoh1691 2.18 Mg O A:Hoh1692 2.18 interactive model: Magnesium binding site 24 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U20, A: G21, A: A563, A: G567, A: G568, A: A573, A: Hoh1693, A: Hoh1694, A: Hoh1695, A: Hoh1696, A: Hoh1697, conact list: Atom Atom Distance (A) Mg O3' A:U20 4.42 Mg OP1 A:G21 2.59 Mg P A:G21 3.93 Mg OP2 A:G21 4.69 Mg C6 A:A563 4.89 Mg N6 A:A563 3.96 Mg N3 A:G567 4.04 Mg N2 A:G567 3.90 Mg C2 A:G567 4.46 Mg O2' A:G567 4.36 Mg C1' A:G568 4.51 Mg O4' A:G568 4.38 Mg O2' A:G568 4.63 Mg C2 A:A573 4.68 Mg C6 A:A573 4.44 Mg N1 A:A573 3.75 Mg N6 A:A573 4.14 Mg O A:Hoh1693 2.08 Mg O A:Hoh1694 2.08 Mg O A:Hoh1695 2.07 Mg O A:Hoh1696 2.08 Mg O A:Hoh1697 2.08 interactive model: Magnesium binding site 25 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C857, A: G858, A: C868, A: G869, A: Hoh1698, A: Hoh1699, A: Hoh1700, A: Hoh1701, conact list: Atom Atom Distance (A) Mg C6 A:C857 4.48 Mg N1 A:C857 4.95 Mg C5 A:C857 4.35 Mg C4 A:C857 4.73 Mg N9 A:G858 4.10 Mg C8 A:G858 2.80 Mg C6 A:G858 4.34 Mg C5 A:G858 3.56 Mg P A:G858 4.90 Mg N7 A:G858 2.31 Mg C4 A:G858 4.47 Mg OP2 A:G858 3.90 Mg O5' A:G858 4.46 Mg O6 A:G858 4.32 Mg OP2 A:C868 4.51 Mg N9 A:G869 4.58 Mg C8 A:G869 3.43 Mg C6 A:G869 3.57 Mg N1 A:G869 4.96 Mg C5 A:G869 3.26 Mg N7 A:G869 2.36 Mg C4 A:G869 4.50 Mg OP2 A:G869 4.41 Mg O6 A:G869 3.22 Mg O A:Hoh1698 2.06 Mg O A:Hoh1699 2.06 Mg O A:Hoh1700 2.06 Mg O A:Hoh1701 2.06 interactive model: Magnesium binding site 26 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1385, A: G1386, A: Hoh1702, A: Hoh1703, A: Hoh1704, A: Hoh1705, A: Hoh1706, A: Hoh1707, conact list: Atom Atom Distance (A) Mg C5 A:G1385 4.93 Mg N7 A:G1385 4.39 Mg OP2 A:G1385 4.58 Mg O6 A:G1385 4.64 Mg C5 A:G1386 4.98 Mg N7 A:G1386 4.10 Mg O6 A:G1386 4.44 Mg O A:Hoh1702 2.18 Mg O A:Hoh1703 2.18 Mg O A:Hoh1704 2.18 Mg O A:Hoh1705 2.17 Mg O A:Hoh1706 2.18 Mg O A:Hoh1707 2.18 interactive model: Magnesium binding site 27 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G963, A: A964, A: U1199, A: Hoh1708, A: Hoh1709, A: Hoh1710, A: Hoh1711, conact list: Atom Atom Distance (A) Mg O3' A:G963 4.25 Mg OP1 A:A964 2.87 Mg P A:A964 4.07 Mg OP2 A:A964 4.84 Mg OP1 A:U1199 3.34 Mg P A:U1199 4.43 Mg OP2 A:U1199 4.57 Mg O A:Hoh1708 2.08 Mg O A:Hoh1709 2.08 Mg O A:Hoh1710 2.07 Mg O A:Hoh1711 2.07 interactive model: Magnesium binding site 28 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C979, A: C980, A: U981, A: U982, A: C984, A: G1221, A: G1222, A: C1223, A: Hoh1712, A: Hoh1713, conact list: Atom Atom Distance (A) Mg OP1 A:C979 2.88 Mg P A:C979 4.00 Mg O3' A:C979 4.76 Mg OP2 A:C979 4.41 Mg C5' A:C979 4.97 Mg O5' A:C979 4.48 Mg OP1 A:C980 3.76 Mg P A:C980 3.49 Mg OP2 A:C980 2.44 Mg O5' A:C980 4.23 Mg N3 A:U981 4.66 Mg C6 A:U981 4.81 Mg C5 A:U981 3.50 Mg C4 A:U981 3.35 Mg O4 A:U981 2.59 Mg N3 A:U982 4.45 Mg C2 A:U982 3.99 Mg N1 A:U982 4.61 Mg C1' A:U982 4.86 Mg O2 A:U982 3.56 Mg C2' A:U982 4.63 Mg O2' A:U982 4.15 Mg N4 A:C984 4.35 Mg C6 A:G1221 4.85 Mg O6 A:G1221 3.99 Mg C6 A:G1222 3.45 Mg N1 A:G1222 4.08 Mg C5 A:G1222 4.60 Mg O6 A:G1222 2.32 Mg C4 A:C1223 4.70 Mg N4 A:C1223 3.85 Mg O A:Hoh1712 2.07 Mg O A:Hoh1713 2.07 interactive model: Magnesium binding site 29 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1433, A: A1434, A: G1435, A: Hoh1714, A: Hoh1715, A: Hoh1716, A: Hoh1717, A: Hoh1718, conact list: Atom Atom Distance (A) Mg OP1 A:A1433 4.00 Mg P A:A1433 4.16 Mg OP2 A:A1433 3.50 Mg O5' A:A1433 4.74 Mg OP2 A:A1434 4.42 Mg O6 A:G1435 4.50 Mg O A:Hoh1714 2.08 Mg O A:Hoh1715 2.08 Mg O A:Hoh1716 2.08 Mg O A:Hoh1717 2.08 Mg O A:Hoh1718 2.09 interactive model: Magnesium binding site 30 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G297, A: A298, A: G299, A: A300, A: G557, A: G558, A: A560, A: G566, A: Hoh1610, A: Hoh1719, A: Hoh1720, A: Hoh1721, A: Hoh1722, conact list: Atom Atom Distance (A) Mg O2' A:G297 4.24 Mg N6 A:A298 4.81 Mg N7 A:A298 4.34 Mg C6 A:G299 3.43 Mg N1 A:G299 4.09 Mg C5 A:G299 4.52 Mg N7 A:G299 4.96 Mg O6 A:G299 2.34 Mg N1 A:A300 4.66 Mg N6 A:A300 4.84 Mg O3' A:G557 4.13 Mg OP1 A:G558 2.25 Mg P A:G558 3.64 Mg OP2 A:G558 4.70 Mg C5' A:G558 4.37 Mg O5' A:G558 4.51 Mg OP1 A:A560 3.87 Mg P A:A560 4.84 Mg O6 A:G566 4.54 Mg O A:Hoh1610 4.79 Mg O A:Hoh1719 2.08 Mg O A:Hoh1720 2.07 Mg O A:Hoh1721 2.07 Mg O A:Hoh1722 2.08 interactive model: Magnesium binding site 31 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U323, A: G324, A: Hoh1723, A: Hoh1724, A: Hoh1725, A: Hoh1726, A: Hoh1727, conact list: Atom Atom Distance (A) Mg OP2 A:U323 4.45 Mg C8 A:G324 4.05 Mg C6 A:G324 4.03 Mg C5 A:G324 3.84 Mg N7 A:G324 3.02 Mg O6 A:G324 3.54 Mg O A:Hoh1723 2.08 Mg O A:Hoh1724 2.08 Mg O A:Hoh1725 2.08 Mg O A:Hoh1726 2.08 Mg O A:Hoh1727 2.09 interactive model: Magnesium binding site 32 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C514, A: G515, A: U516, A: G517, A: A532, A: A533, A: Hoh1728, A: Hoh1729, A: Hoh1730, A: Hoh1731, conact list: Atom Atom Distance (A) Mg C5 A:C514 4.47 Mg C4 A:C514 4.84 Mg N4 A:C514 4.77 Mg C8 A:G515 4.64 Mg C6 A:G515 4.41 Mg C5 A:G515 4.36 Mg N7 A:G515 3.60 Mg OP2 A:G515 4.98 Mg O6 A:G515 3.75 Mg N3 A:U516 4.50 Mg C5 A:U516 4.39 Mg C4 A:U516 3.58 Mg O4 A:U516 2.52 Mg N1 A:G517 4.67 Mg O6 A:G517 4.81 Mg O3' A:A532 4.17 Mg OP1 A:A533 2.57 Mg C8 A:A533 4.34 Mg P A:A533 3.87 Mg N7 A:A533 4.94 Mg C5' A:A533 4.76 Mg C2' A:A533 4.89 Mg O5' A:A533 4.59 Mg O A:Hoh1728 2.07 Mg O A:Hoh1729 2.07 Mg O A:Hoh1730 2.07 Mg O A:Hoh1731 2.07 interactive model: Magnesium binding site 33 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A607, A: A608, A: A609, A: U610, A: A630, A: C631, A: Hoh1732, A: Hoh1733, A: Hoh1734, A: Hoh1735, A: Hoh1736, conact list: Atom Atom Distance (A) Mg OP1 A:A607 4.32 Mg C3' A:A607 4.87 Mg O3' A:A607 4.64 Mg OP1 A:A608 3.99 Mg C8 A:A608 4.38 Mg P A:A608 3.32 Mg N7 A:A608 4.36 Mg OP2 A:A608 2.29 Mg C5' A:A608 4.84 Mg O5' A:A608 3.50 Mg N6 A:A609 4.88 Mg N7 A:A609 4.28 Mg OP2 A:A609 4.48 Mg C4 A:U610 4.96 Mg O4 A:U610 4.27 Mg C2 A:A630 4.72 Mg N1 A:A630 4.26 Mg O2 A:C631 4.35 Mg O A:Hoh1732 2.08 Mg O A:Hoh1733 2.08 Mg O A:Hoh1734 2.08 Mg O A:Hoh1735 2.08 Mg O A:Hoh1736 2.08 interactive model: Magnesium binding site 34 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1109, A: A1110, A: A1111, A: U1189, C: His175, A: Hoh1737, A: Hoh1738, A: Hoh1739, A: Hoh1740, A: Hoh1741, conact list: Atom Atom Distance (A) Mg OP1 A:C1109 3.70 Mg C3' A:C1109 4.91 Mg P A:C1109 4.33 Mg O3' A:C1109 4.72 Mg OP2 A:C1109 4.21 Mg O5' A:C1109 4.70 Mg OP1 A:A1110 4.14 Mg P A:A1110 3.45 Mg OP2 A:A1110 2.33 Mg O5' A:A1110 3.69 Mg N6 A:A1111 4.97 Mg N7 A:A1111 4.49 Mg OP2 A:A1111 4.73 Mg N3 A:U1189 4.81 Mg C2 A:U1189 4.55 Mg O2 A:U1189 3.56 Mg CD2 C:His175 4.70 Mg O A:Hoh1737 2.08 Mg O A:Hoh1738 2.08 Mg O A:Hoh1739 2.08 Mg O A:Hoh1740 2.08 Mg O A:Hoh1741 2.08 interactive model: Magnesium binding site 35 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1094, A: U1095, A: C1096, A: G1108, A: Hoh1742, A: Hoh1743, A: Hoh1744, A: Hoh1745, conact list: Atom Atom Distance (A) Mg C2' A:G1094 4.80 Mg O2' A:G1094 3.39 Mg OP1 A:U1095 4.66 Mg P A:U1095 4.13 Mg OP2 A:U1095 2.78 Mg C5' A:U1095 4.97 Mg O5' A:U1095 4.96 Mg OP1 A:C1096 4.85 Mg P A:C1096 4.80 Mg OP2 A:C1096 3.92 Mg C6 A:G1108 3.71 Mg N1 A:G1108 4.12 Mg C5 A:G1108 4.98 Mg O6 A:G1108 2.63 Mg O A:Hoh1742 2.07 Mg O A:Hoh1743 2.07 Mg O A:Hoh1744 2.07 Mg O A:Hoh1745 2.07 interactive model: Magnesium binding site 36 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1509, A: C1524, A: G1525, A: G1526, U: Arg34, A: Hoh1746, A: Hoh1747, A: Hoh1748, A: Hoh1749, A: Hoh1750, U: Hoh219, conact list: Atom Atom Distance (A) Mg N4 A:C1509 4.25 Mg C5 A:C1524 4.72 Mg N4 A:C1524 4.54 Mg N7 A:G1525 4.85 Mg O6 A:G1525 4.47 Mg O6 A:G1526 4.46 Mg NH2 U:Arg34 4.41 Mg NH1 U:Arg34 4.75 Mg O A:Hoh1746 2.18 Mg O A:Hoh1747 2.18 Mg O A:Hoh1748 2.18 Mg O A:Hoh1749 2.18 Mg O A:Hoh1750 2.18 Mg O U:Hoh219 2.18 interactive model: Magnesium binding site 37 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 37 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1498, A: A1499, A: A1500, A: G1504, A: G1505, A: Hoh1751, A: Hoh1752, A: Hoh1753, conact list: Atom Atom Distance (A) Mg C3' A:U1498 4.14 Mg O3' A:U1498 2.82 Mg C2' A:U1498 4.47 Mg O2' A:U1498 3.61 Mg N9 A:A1499 4.64 Mg OP1 A:A1499 4.41 Mg C3' A:A1499 3.40 Mg C8 A:A1499 4.33 Mg C1' A:A1499 4.90 Mg P A:A1499 2.96 Mg N7 A:A1499 4.74 Mg O3' A:A1499 4.03 Mg O4' A:A1499 4.86 Mg OP2 A:A1499 2.44 Mg C5' A:A1499 3.86 Mg C2' A:A1499 4.24 Mg C4' A:A1499 4.17 Mg O5' A:A1499 3.13 Mg OP1 A:A1500 4.91 Mg C8 A:A1500 4.42 Mg P A:A1500 3.66 Mg N7 A:A1500 4.11 Mg OP2 A:A1500 2.37 Mg O5' A:A1500 4.14 Mg O3' A:G1504 4.27 Mg O2' A:G1504 4.55 Mg OP1 A:G1505 4.17 Mg P A:G1505 3.83 Mg OP2 A:G1505 2.91 Mg O A:Hoh1751 2.07 Mg O A:Hoh1752 2.07 Mg O A:Hoh1753 2.07 interactive model: Magnesium binding site 38 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 38 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G64, A: C99, A: G100, A: A101, A: Hoh1754, A: Hoh1755, A: Hoh1756, A: Hoh1757, A: Hoh1758, conact list: Atom Atom Distance (A) Mg C6 A:G64 4.75 Mg C5 A:G64 4.88 Mg N7 A:G64 4.33 Mg O6 A:G64 4.00 Mg C3' A:C99 4.52 Mg O2 A:C99 4.86 Mg O3' A:C99 4.65 Mg C2' A:C99 4.18 Mg O2' A:C99 4.80 Mg OP1 A:G100 4.45 Mg C8 A:G100 4.79 Mg P A:G100 3.67 Mg N7 A:G100 4.77 Mg OP2 A:G100 2.24 Mg O5' A:G100 4.26 Mg N7 A:A101 4.44 Mg OP2 A:A101 4.53 Mg O A:Hoh1754 2.08 Mg O A:Hoh1755 2.07 Mg O A:Hoh1756 2.08 Mg O A:Hoh1757 2.08 Mg O A:Hoh1758 2.08 interactive model: Magnesium binding site 39 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 39 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A179, A: U180, A: A181, A: C194, A: A195, A: Hoh1759, A: Hoh1760, A: Hoh1761, A: Hoh1762, conact list: Atom Atom Distance (A) Mg N7 A:A179 4.62 Mg OP2 A:A179 4.52 Mg N3 A:U180 4.70 Mg C5 A:U180 3.90 Mg C4 A:U180 3.48 Mg O4 A:U180 2.51 Mg C6 A:A181 4.45 Mg C5 A:A181 4.74 Mg N6 A:A181 3.39 Mg N7 A:A181 4.31 Mg OP1 A:C194 4.06 Mg C3' A:C194 4.15 Mg P A:C194 4.28 Mg O3' A:C194 4.10 Mg OP2 A:C194 4.33 Mg C5' A:C194 4.61 Mg C4' A:C194 4.97 Mg O5' A:C194 3.87 Mg OP1 A:A195 3.67 Mg P A:A195 3.41 Mg OP2 A:A195 2.39 Mg O5' A:A195 4.69 Mg O A:Hoh1759 2.07 Mg O A:Hoh1760 2.07 Mg O A:Hoh1761 2.07 Mg O A:Hoh1762 2.07 interactive model: Magnesium binding site 40 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 40 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C503, A: C504, A: C522, A: A523, A: C536, A: G537, A: Hoh1763, A: Hoh1764, A: Hoh1765, A: Hoh1766, A: Hoh1767, A: Hoh1768, conact list: Atom Atom Distance (A) Mg OP1 A:C503 3.93 Mg C5' A:C503 4.91 Mg OP2 A:C504 4.72 Mg O3' A:C522 4.18 Mg O2' A:C522 4.15 Mg OP1 A:A523 4.30 Mg P A:A523 4.93 Mg OP1 A:C536 4.56 Mg OP2 A:G537 4.75 Mg O A:Hoh1763 2.18 Mg O A:Hoh1764 2.18 Mg O A:Hoh1765 2.18 Mg O A:Hoh1766 2.18 Mg O A:Hoh1767 2.18 Mg O A:Hoh1768 2.18 interactive model: Magnesium binding site 41 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 41 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G115, A: A116, A: G117, A: U118, A: A288, A: G289, A: Hoh1769, A: Hoh1770, A: Hoh1771, conact list: Atom Atom Distance (A) Mg O3' A:G115 4.39 Mg O2' A:G115 4.91 Mg OP1 A:A116 2.70 Mg C3' A:A116 3.91 Mg P A:A116 3.18 Mg O3' A:A116 4.11 Mg OP2 A:A116 2.81 Mg C5' A:A116 4.24 Mg C4' A:A116 4.65 Mg O5' A:A116 4.19 Mg OP1 A:G117 4.12 Mg C8 A:G117 4.99 Mg P A:G117 3.47 Mg N7 A:G117 4.69 Mg OP2 A:G117 2.14 Mg O5' A:G117 4.50 Mg O4 A:U118 4.89 Mg OP1 A:A288 4.94 Mg C3' A:A288 4.61 Mg O3' A:A288 4.61 Mg OP2 A:A288 4.62 Mg O5' A:A288 4.82 Mg OP1 A:G289 4.45 Mg P A:G289 3.58 Mg OP2 A:G289 2.24 Mg O5' A:G289 3.92 Mg O A:Hoh1769 2.18 Mg O A:Hoh1770 2.17 Mg O A:Hoh1771 2.18 interactive model: Magnesium binding site 42 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 42 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A59, A: C330, A: G331, A: G351, A: C352, A: G354, A: Hoh1772, A: Hoh1773, A: Hoh1774, A: Hoh1775, A: Hoh1776, conact list: Atom Atom Distance (A) Mg N1 A:A59 4.76 Mg N6 A:A59 4.51 Mg O2' A:C330 4.83 Mg O4' A:G331 4.14 Mg C3' A:G351 4.46 Mg O3' A:G351 3.34 Mg C4' A:G351 4.93 Mg OP1 A:C352 4.85 Mg P A:C352 3.42 Mg O4' A:C352 4.08 Mg OP2 A:C352 2.61 Mg C5' A:C352 4.66 Mg C4' A:C352 4.62 Mg O5' A:C352 3.73 Mg OP1 A:G354 4.60 Mg C8 A:G354 4.98 Mg N7 A:G354 4.61 Mg O A:Hoh1772 2.08 Mg O A:Hoh1773 2.08 Mg O A:Hoh1774 2.08 Mg O A:Hoh1775 2.08 Mg O A:Hoh1776 2.08 interactive model: Magnesium binding site 43 out of 43 in 3ofa Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 43 of Magnesium in the PDB 3ofa. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1048, A: U1049, A: C1203, A: A1204, N: Ala1, N: Lys2, N: Gln3, N: Lys6, A: Hoh1654, A: Hoh1655, A: Hoh1656, A: Hoh1657, A: Hoh1658, N: Hoh106, conact list: Atom Atom Distance (A) Mg OP1 A:G1048 4.09 Mg P A:G1048 4.94 Mg OP2 A:G1048 4.89 Mg OP1 A:U1049 3.91 Mg OP1 A:C1203 4.79 Mg OP1 A:A1204 4.36 Mg P A:A1204 4.86 Mg OP2 A:A1204 4.39 Mg N N:Ala1 3.96 Mg C N:Ala1 4.71 Mg CA N:Ala1 4.72 Mg N N:Lys2 3.79 Mg C N:Lys2 4.85 Mg CA N:Lys2 4.39 Mg N N:Gln3 4.39 Mg OE1 N:Gln3 4.96 Mg NZ N:Lys6 4.85 Mg O A:Hoh1654 2.18 Mg O A:Hoh1655 2.18 Mg O A:Hoh1656 2.18 Mg O A:Hoh1657 2.18 Mg O A:Hoh1658 2.18 Mg O N:Hoh106 2.18 interactive model: