Magnesium in the structure of Crystal Structure Of The E. Coli Ribosome Bound to Chloramphenicol. This File Contains The 50S Subunit of the Second 70S Ribosome. (pdb 3ofd)

The binding sites of Magnesium atom in the structure of Crystal Structure Of The E. Coli Ribosome Bound to Chloramphenicol. This File Contains The 50S Subunit of the Second 70S Ribosome. (pdb code 3ofd). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 3ofd structure was solved by J.A.DUNKLE, L.XIONG, A.S.MANKIN, J.H.D.CATE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 82.2-3.2 Space group P212121 a (A) 211.456 b (A) 434.084 c (A) 621.233 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.1 Rfree (%) 25.2 Magnesium Binding Sites: Magnesium binding site 1 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G17, A: U18, A: U521, A: A522, A: Hoh3038, A: Hoh3039, A: Hoh3040, A: Hoh3041, A: Hoh3042, A: Hoh3043, conact list: Atom Atom Distance (A) Mg N7 A:G17 4.72 Mg O6 A:G17 4.52 Mg O4 A:U18 4.41 Mg O4 A:U521 4.51 Mg N6 A:A522 4.58 Mg O A:Hoh3038 2.18 Mg O A:Hoh3039 2.17 Mg O A:Hoh3040 2.18 Mg O A:Hoh3041 2.18 Mg O A:Hoh3042 2.18 Mg O A:Hoh3043 2.18 interactive model: Magnesium binding site 2 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A28, A: U29, A: G30, A: C31, A: A447, A: G473, A: G474, A: Hoh3044, A: Hoh3045, A: Hoh3046, A: Hoh3047, A: Hoh3048, A: Hoh3049, conact list: Atom Atom Distance (A) Mg OP1 A:A28 4.26 Mg P A:A28 4.64 Mg OP2 A:A28 4.05 Mg C5 A:U29 3.96 Mg C4 A:U29 4.45 Mg OP2 A:U29 4.74 Mg O4 A:U29 4.11 Mg O6 A:G30 4.73 Mg N4 A:C31 4.61 Mg OP2 A:A447 4.54 Mg O2' A:A447 4.56 Mg O6 A:G473 4.39 Mg O6 A:G474 4.51 Mg O A:Hoh3044 2.18 Mg O A:Hoh3045 2.18 Mg O A:Hoh3046 2.18 Mg O A:Hoh3047 2.18 Mg O A:Hoh3048 2.18 Mg O A:Hoh3049 2.18 interactive model: Magnesium binding site 3 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C41, A: A42, A: Hoh3050, A: Hoh3051, A: Hoh3052, A: Hoh3053, A: Hoh3054, A: Hoh3055, conact list: Atom Atom Distance (A) Mg OP2 A:C41 4.63 Mg OP2 A:A42 4.95 Mg O A:Hoh3050 2.18 Mg O A:Hoh3051 2.18 Mg O A:Hoh3052 2.18 Mg O A:Hoh3053 2.18 Mg O A:Hoh3054 2.18 Mg O A:Hoh3055 2.18 interactive model: Magnesium binding site 4 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A119, A: U120, A: G121, A: G122, A: G123, A: Mg2909, A: Hoh3056, A: Hoh3057, A: Hoh3058, A: Hoh3059, A: Hoh3060, A: Hoh3062, conact list: Atom Atom Distance (A) Mg O3' A:A119 4.02 Mg P A:U120 3.79 Mg OP2 A:U120 2.62 Mg C5' A:U120 4.33 Mg O5' A:U120 4.10 Mg OP1 A:G121 4.53 Mg C6 A:G122 4.88 Mg C5 A:G122 4.99 Mg N7 A:G122 4.59 Mg O6 A:G122 4.33 Mg N7 A:G123 4.69 Mg O6 A:G123 4.41 Mg MG A:Mg2909 4.69 Mg O A:Hoh3056 2.08 Mg O A:Hoh3057 2.08 Mg O A:Hoh3058 2.08 Mg O A:Hoh3059 2.08 Mg O A:Hoh3060 2.08 Mg O A:Hoh3062 3.61 interactive model: Magnesium binding site 5 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A119, A: U120, A: G123, A: G124, A: Mg2908, A: Hoh3057, A: Hoh3058, A: Hoh3061, A: Hoh3062, A: Hoh3063, A: Hoh3064, A: Hoh3065, conact list: Atom Atom Distance (A) Mg O3' A:A119 4.13 Mg OP1 A:U120 2.92 Mg P A:U120 3.21 Mg OP2 A:U120 2.68 Mg C5' A:U120 4.76 Mg O5' A:U120 4.53 Mg N7 A:G123 4.47 Mg C6 A:G124 4.79 Mg C5 A:G124 4.86 Mg N7 A:G124 4.14 Mg O6 A:G124 3.99 Mg MG A:Mg2908 4.69 Mg O A:Hoh3057 4.99 Mg O A:Hoh3058 4.35 Mg O A:Hoh3061 2.08 Mg O A:Hoh3062 2.08 Mg O A:Hoh3063 2.08 Mg O A:Hoh3064 2.08 Mg O A:Hoh3065 2.08 interactive model: Magnesium binding site 6 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U296, A: G297, A: G338, U: Ala1, A: Hoh3066, A: Hoh3067, A: Hoh3068, A: Hoh3069, U: Hoh3644, conact list: Atom Atom Distance (A) Mg OP1 A:U296 4.83 Mg O3' A:U296 4.93 Mg OP2 A:U296 4.82 Mg OP1 A:G297 4.74 Mg C8 A:G297 4.73 Mg P A:G297 3.84 Mg N7 A:G297 4.86 Mg OP2 A:G297 2.54 Mg O5' A:G297 4.01 Mg OP1 A:G338 4.15 Mg O U:Ala1 4.90 Mg N U:Ala1 4.69 Mg CB U:Ala1 4.87 Mg CA U:Ala1 4.21 Mg O A:Hoh3066 2.08 Mg O A:Hoh3067 2.08 Mg O A:Hoh3068 2.08 Mg O A:Hoh3069 2.08 Mg O U:Hoh3644 2.08 interactive model: Magnesium binding site 7 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G230, A: U419, A: Hoh3070, A: Hoh3071, A: Hoh3072, A: Hoh3073, A: Hoh3074, conact list: Atom Atom Distance (A) Mg C8 A:G230 4.67 Mg N7 A:G230 4.07 Mg OP1 A:U419 3.33 Mg P A:U419 4.45 Mg C5' A:U419 4.23 Mg O5' A:U419 4.39 Mg O A:Hoh3070 2.08 Mg O A:Hoh3071 2.08 Mg O A:Hoh3072 2.08 Mg O A:Hoh3073 2.08 Mg O A:Hoh3074 2.08 interactive model: Magnesium binding site 8 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U448, A: A449, A: G450, A: A453, A: Hoh3075, A: Hoh3076, A: Hoh3077, A: Hoh3078, conact list: Atom Atom Distance (A) Mg C5' A:U448 4.79 Mg C4' A:U448 4.99 Mg C8 A:A449 4.32 Mg C5 A:A449 4.95 Mg P A:A449 4.27 Mg N7 A:A449 4.04 Mg OP2 A:A449 2.99 Mg O5' A:A449 4.40 Mg C8 A:G450 3.93 Mg C6 A:G450 3.97 Mg C5 A:G450 3.74 Mg N7 A:G450 2.88 Mg C4 A:G450 4.99 Mg O6 A:G450 3.49 Mg OP1 A:A453 2.79 Mg P A:A453 4.07 Mg OP2 A:A453 4.46 Mg O A:Hoh3075 2.07 Mg O A:Hoh3076 2.07 Mg O A:Hoh3077 2.07 Mg O A:Hoh3078 2.07 interactive model: Magnesium binding site 9 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U525, A: A526, A: C527, A: A528, A: Hoh3079, A: Hoh3080, A: Hoh3081, A: Hoh3082, conact list: Atom Atom Distance (A) Mg C3' A:U525 4.83 Mg O3' A:U525 3.68 Mg OP1 A:A526 2.70 Mg P A:A526 3.35 Mg OP2 A:A526 3.60 Mg O5' A:A526 4.88 Mg OP1 A:C527 4.35 Mg O3' A:C527 4.32 Mg C5' A:C527 4.30 Mg OP1 A:A528 4.27 Mg P A:A528 4.99 Mg O A:Hoh3079 2.07 Mg O A:Hoh3080 2.06 Mg O A:Hoh3081 2.07 Mg O A:Hoh3082 2.07 interactive model: Magnesium binding site 10 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G535, A: G536, A: Hoh3083, A: Hoh3084, A: Hoh3085, A: Hoh3086, A: Hoh3087, conact list: Atom Atom Distance (A) Mg O3' A:G535 4.90 Mg OP1 A:G536 3.86 Mg P A:G536 3.74 Mg OP2 A:G536 2.72 Mg O5' A:G536 4.70 Mg O A:Hoh3083 2.09 Mg O A:Hoh3084 2.09 Mg O A:Hoh3085 2.09 Mg O A:Hoh3086 2.08 Mg O A:Hoh3087 2.08 interactive model: Magnesium binding site 11 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G559, A: C560, A: A1008, A: G2038, A: Hoh3088, A: Hoh3089, A: Hoh3090, A: Hoh3091, A: Hoh3092, A: Hoh3093, conact list: Atom Atom Distance (A) Mg OP1 A:G559 4.77 Mg OP1 A:C560 4.24 Mg P A:C560 4.86 Mg OP2 A:C560 4.74 Mg OP1 A:A1008 4.33 Mg OP1 A:G2038 4.18 Mg O A:Hoh3088 2.18 Mg O A:Hoh3089 2.18 Mg O A:Hoh3090 2.18 Mg O A:Hoh3091 2.18 Mg O A:Hoh3092 2.18 Mg O A:Hoh3093 2.18 interactive model: Magnesium binding site 12 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U566, A: U567, A: G808, A: G809, A: U810, L: His35, A: Hoh3094, A: Hoh3095, A: Hoh3096, A: Hoh3097, A: Hoh3098, conact list: Atom Atom Distance (A) Mg C3' A:U566 4.98 Mg O3' A:U566 3.57 Mg OP1 A:U567 2.22 Mg P A:U567 3.39 Mg OP2 A:U567 4.53 Mg C5' A:U567 4.43 Mg O5' A:U567 4.38 Mg OP2 A:G808 4.46 Mg C8 A:G809 4.92 Mg N7 A:G809 4.32 Mg OP2 A:G809 4.70 Mg O4 A:U810 4.27 Mg CD2 L:His35 4.72 Mg O A:Hoh3094 2.08 Mg O A:Hoh3095 2.08 Mg O A:Hoh3096 2.08 Mg O A:Hoh3097 2.08 Mg O A:Hoh3098 2.08 interactive model: Magnesium binding site 13 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U568, A: A943, A: C944, A: A945, L: Lys36, A: Hoh3099, A: Hoh3100, A: Hoh3101, A: Hoh3102, A: Hoh3103, A: Hoh3594, L: Hoh145, conact list: Atom Atom Distance (A) Mg OP2 A:U568 4.59 Mg O3' A:A943 5.00 Mg OP1 A:C944 3.85 Mg P A:C944 4.49 Mg OP2 A:C944 4.41 Mg C8 A:A945 4.87 Mg N7 A:A945 4.79 Mg CE L:Lys36 4.76 Mg CD L:Lys36 4.89 Mg O A:Hoh3099 2.18 Mg O A:Hoh3100 2.18 Mg O A:Hoh3101 2.19 Mg O A:Hoh3102 2.19 Mg O A:Hoh3103 2.18 Mg O A:Hoh3594 4.12 Mg O L:Hoh145 2.18 interactive model: Magnesium binding site 14 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U573, A: A574, A: U576, A: G577, A: Hoh3104, A: Hoh3105, A: Hoh3106, A: Hoh3107, A: Hoh3108, conact list: Atom Atom Distance (A) Mg OP1 A:U573 4.58 Mg P A:A574 4.52 Mg OP2 A:A574 3.05 Mg C5' A:A574 4.97 Mg C5 A:U576 4.66 Mg C4 A:U576 4.66 Mg OP2 A:U576 4.65 Mg O4 A:U576 4.47 Mg O6 A:G577 4.37 Mg O A:Hoh3104 2.08 Mg O A:Hoh3105 2.08 Mg O A:Hoh3106 2.08 Mg O A:Hoh3107 2.08 Mg O A:Hoh3108 2.08 interactive model: Magnesium binding site 15 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U580, A: C581, A: U1258, A: G1259, A: Hoh3115, A: Hoh3116, A: Hoh3117, A: Hoh3118, A: Hoh3119, A: Hoh3120, conact list: Atom Atom Distance (A) Mg O4 A:U580 4.83 Mg N4 A:C581 4.88 Mg C5 A:U1258 4.78 Mg C4 A:U1258 4.96 Mg O4 A:U1258 4.42 Mg O6 A:G1259 4.62 Mg O A:Hoh3115 2.19 Mg O A:Hoh3116 2.19 Mg O A:Hoh3117 2.19 Mg O A:Hoh3118 2.18 Mg O A:Hoh3119 2.18 Mg O A:Hoh3120 2.18 interactive model: Magnesium binding site 16 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A582, A: G583, A: C584, A: G585, A: C1251, A: G1252, A: A1253, A: Hoh3121, A: Hoh3122, A: Hoh3123, A: Hoh3124, A: Hoh3125, A: Hoh3126, conact list: Atom Atom Distance (A) Mg N7 A:A582 4.78 Mg OP2 A:A582 4.09 Mg N7 A:G583 4.42 Mg OP2 A:G583 4.10 Mg O6 A:G583 4.93 Mg N4 A:C584 4.41 Mg O6 A:G585 4.84 Mg O2' A:C1251 4.09 Mg C5' A:G1252 4.61 Mg OP1 A:A1253 4.35 Mg OP2 A:A1253 4.85 Mg O A:Hoh3121 2.19 Mg O A:Hoh3122 2.18 Mg O A:Hoh3123 2.18 Mg O A:Hoh3124 2.18 Mg O A:Hoh3125 2.18 Mg O A:Hoh3126 2.18 interactive model: Magnesium binding site 17 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A608, A: A616, A: G618, A: G619, E: Lys98, A: Hoh3127, A: Hoh3128, A: Hoh3129, A: Hoh3130, A: Hoh3131, A: Hoh3132, conact list: Atom Atom Distance (A) Mg OP2 A:A608 4.76 Mg OP2 A:A616 4.02 Mg C6 A:G618 4.50 Mg C5 A:G618 4.75 Mg N7 A:G618 4.25 Mg O6 A:G618 3.63 Mg C6 A:G619 4.10 Mg N1 A:G619 4.21 Mg O6 A:G619 3.72 Mg CE E:Lys98 4.39 Mg CD E:Lys98 4.50 Mg O A:Hoh3127 2.18 Mg O A:Hoh3128 2.18 Mg O A:Hoh3129 2.18 Mg O A:Hoh3130 2.18 Mg O A:Hoh3131 2.18 Mg O A:Hoh3132 2.18 interactive model: Magnesium binding site 18 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G620, A: A621, A: G622, L: Asn99, L: Ile100, A: Hoh3133, A: Hoh3134, L: Hoh146, L: Hoh147, conact list: Atom Atom Distance (A) Mg O3' A:G620 3.83 Mg O2' A:G620 4.97 Mg OP1 A:A621 4.77 Mg P A:A621 3.79 Mg OP2 A:A621 2.62 Mg O5' A:A621 4.82 Mg OP2 A:G622 4.22 Mg O5' A:G622 4.97 Mg CB L:Asn99 4.52 Mg C L:Asn99 4.46 Mg CA L:Asn99 4.24 Mg N L:Ile100 4.44 Mg O A:Hoh3133 2.07 Mg O A:Hoh3134 2.07 Mg O L:Hoh146 2.07 Mg O L:Hoh147 2.07 interactive model: Magnesium binding site 19 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C650, A: G651, A: Hoh3135, A: Hoh3136, A: Hoh3137, A: Hoh3138, A: Hoh3139, A: Hoh3140, conact list: Atom Atom Distance (A) Mg C5 A:C650 4.82 Mg C4 A:C650 4.73 Mg N4 A:C650 4.03 Mg N7 A:G651 4.28 Mg O6 A:G651 4.42 Mg O A:Hoh3135 2.18 Mg O A:Hoh3136 2.18 Mg O A:Hoh3137 2.18 Mg O A:Hoh3138 2.18 Mg O A:Hoh3139 2.18 Mg O A:Hoh3140 2.18 interactive model: Magnesium binding site 20 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C732, A: G733, A: G760, A: A761, A: Hoh3141, A: Hoh3142, A: Hoh3143, A: Hoh3144, conact list: Atom Atom Distance (A) Mg C6 A:C732 4.96 Mg C5 A:C732 4.70 Mg OP2 A:C732 4.47 Mg N9 A:G733 4.61 Mg C8 A:G733 3.42 Mg C6 A:G733 4.12 Mg C5 A:G733 3.64 Mg N7 A:G733 2.62 Mg C4 A:G733 4.73 Mg OP2 A:G733 4.18 Mg O6 A:G733 3.87 Mg OP2 A:G760 4.54 Mg O5' A:G760 4.94 Mg N9 A:A761 4.29 Mg C8 A:A761 3.00 Mg C6 A:A761 4.56 Mg C5 A:A761 3.75 Mg N6 A:A761 4.49 Mg P A:A761 4.78 Mg N7 A:A761 2.51 Mg C4 A:A761 4.66 Mg OP2 A:A761 3.57 Mg O5' A:A761 4.62 Mg O A:Hoh3141 2.07 Mg O A:Hoh3142 2.07 Mg O A:Hoh3143 2.07 Mg O A:Hoh3144 2.07 interactive model: Magnesium binding site 21 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A739, A: U755, A: A756, A: G757, A: C758, A: Hoh3145, A: Hoh3146, A: Hoh3147, A: Hoh3148, A: Hoh3149, A: Hoh3150, conact list: Atom Atom Distance (A) Mg C2 A:A739 4.85 Mg N1 A:A739 4.71 Mg C5 A:U755 4.76 Mg C4 A:U755 4.91 Mg O4 A:U755 4.88 Mg N6 A:A756 4.78 Mg N7 A:A756 4.58 Mg N7 A:G757 4.61 Mg N4 A:C758 4.94 Mg O A:Hoh3145 2.18 Mg O A:Hoh3146 2.18 Mg O A:Hoh3147 2.18 Mg O A:Hoh3148 2.18 Mg O A:Hoh3149 2.18 Mg O A:Hoh3150 2.18 interactive model: Magnesium binding site 22 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U744, A: G745, A: U746, A: C2610, A: C2611, D: Ser137, A: Hoh3151, A: Hoh3152, A: Hoh3153, A: Hoh3154, A: Hoh3155, conact list: Atom Atom Distance (A) Mg OP2 A:U744 3.89 Mg N7 A:G745 4.87 Mg O6 A:G745 4.70 Mg N3 A:U746 4.42 Mg C5 A:U746 4.79 Mg C4 A:U746 3.71 Mg O4 A:U746 2.52 Mg OP2 A:C2610 4.95 Mg OP1 A:C2611 4.00 Mg OG D:Ser137 4.04 Mg O A:Hoh3151 2.08 Mg O A:Hoh3152 2.08 Mg O A:Hoh3153 2.08 Mg O A:Hoh3154 2.08 Mg O A:Hoh3155 2.07 interactive model: Magnesium binding site 23 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A750, A: A751, A: A789, A: G1613, A: A1614, A: C1617, A: Hoh3156, A: Hoh3157, A: Hoh3158, A: Hoh3159, conact list: Atom Atom Distance (A) Mg O3' A:A750 3.99 Mg OP1 A:A751 2.35 Mg C8 A:A751 4.48 Mg P A:A751 3.63 Mg N7 A:A751 4.19 Mg OP2 A:A751 4.46 Mg O5' A:A751 4.78 Mg C2 A:A789 4.93 Mg N1 A:A789 4.19 Mg N6 A:A789 4.93 Mg N3 A:G1613 4.96 Mg C3' A:G1613 4.63 Mg O3' A:G1613 4.11 Mg C2' A:G1613 3.95 Mg O2' A:G1613 2.93 Mg OP1 A:A1614 2.55 Mg P A:A1614 3.72 Mg OP2 A:A1614 4.41 Mg O5' A:A1614 4.98 Mg N3 A:C1617 4.77 Mg O A:Hoh3156 2.07 Mg O A:Hoh3157 2.07 Mg O A:Hoh3158 2.07 Mg O A:Hoh3159 2.07 interactive model: Magnesium binding site 24 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A782, A: A783, A: G784, A: G2588, A: A2589, C: Ala223, C: Asn225, A: Hoh3160, A: Hoh3161, A: Hoh3162, conact list: Atom Atom Distance (A) Mg O3' A:A782 3.92 Mg O2' A:A782 4.37 Mg C3' A:A783 3.74 Mg P A:A783 3.73 Mg O3' A:A783 3.77 Mg OP2 A:A783 3.05 Mg C5' A:A783 4.21 Mg C2' A:A783 4.94 Mg C4' A:A783 4.52 Mg O5' A:A783 3.45 Mg OP1 A:G784 3.95 Mg P A:G784 3.51 Mg OP2 A:G784 2.61 Mg O5' A:G784 4.92 Mg O3' A:G2588 3.83 Mg OP1 A:A2589 2.74 Mg P A:A2589 3.78 Mg C5' A:A2589 4.19 Mg O5' A:A2589 4.30 Mg O C:Ala223 4.06 Mg OD1 C:Asn225 4.70 Mg O A:Hoh3160 2.07 Mg O A:Hoh3161 2.06 Mg O A:Hoh3162 2.07 interactive model: Magnesium binding site 25 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G797, A: G798, E: Lys58, A: Hoh3165, A: Hoh3166, A: Hoh3167, A: Hoh3168, A: Hoh3169, E: Hoh203, conact list: Atom Atom Distance (A) Mg O6 A:G797 4.45 Mg C6 A:G798 4.43 Mg C5 A:G798 4.84 Mg N7 A:G798 4.43 Mg O6 A:G798 3.43 Mg NZ E:Lys58 4.16 Mg O A:Hoh3165 2.18 Mg O A:Hoh3166 2.19 Mg O A:Hoh3167 2.18 Mg O A:Hoh3168 2.18 Mg O A:Hoh3169 2.18 Mg O E:Hoh203 2.19 interactive model: Magnesium binding site 26 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A190, A: A191, A: C192, A: A203, A: G799, A: A800, A: Hoh3170, A: Hoh3171, A: Hoh3172, A: Hoh3173, A: Hoh3174, conact list: Atom Atom Distance (A) Mg N6 A:A190 4.36 Mg C2 A:A191 4.35 Mg C6 A:A191 4.61 Mg N1 A:A191 3.66 Mg N6 A:A191 4.59 Mg N3 A:C192 4.83 Mg O3' A:A203 4.95 Mg O2' A:A203 4.58 Mg C3' A:G799 4.45 Mg O3' A:G799 3.79 Mg C2' A:G799 4.06 Mg O2' A:G799 3.81 Mg OP1 A:A800 2.76 Mg P A:A800 3.76 Mg OP2 A:A800 4.53 Mg O A:Hoh3170 2.10 Mg O A:Hoh3171 2.09 Mg O A:Hoh3172 2.08 Mg O A:Hoh3173 2.08 Mg O A:Hoh3174 2.08 interactive model: Magnesium binding site 27 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A675, A: A800, A: G801, A: A802, E: Arg49, A: Hoh3175, A: Hoh3176, A: Hoh3177, E: Hoh204, E: Hoh205, conact list: Atom Atom Distance (A) Mg OP2 A:A675 4.19 Mg N3 A:A800 4.45 Mg C2 A:A800 4.78 Mg C3' A:G801 4.57 Mg O3' A:G801 4.21 Mg O4' A:G801 4.96 Mg C5' A:G801 4.25 Mg C4' A:G801 3.94 Mg OP1 A:A802 3.38 Mg P A:A802 3.43 Mg OP2 A:A802 2.76 Mg O5' A:A802 4.82 Mg NH1 E:Arg49 4.77 Mg O A:Hoh3175 2.08 Mg O A:Hoh3176 2.09 Mg O A:Hoh3177 2.08 Mg O E:Hoh204 2.08 Mg O E:Hoh205 2.08 interactive model: Magnesium binding site 28 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C565, A: U810, A: U811, A: G1252, A: A1253, A: Hoh3178, A: Hoh3179, A: Hoh3180, A: Hoh3181, conact list: Atom Atom Distance (A) Mg O3' A:C565 4.76 Mg C4' A:C565 4.72 Mg OP1 A:U810 3.66 Mg P A:U810 4.70 Mg OP2 A:U810 4.73 Mg OP1 A:U811 3.93 Mg C5' A:U811 4.80 Mg O2' A:G1252 4.82 Mg C8 A:A1253 4.31 Mg C6 A:A1253 3.67 Mg N1 A:A1253 4.97 Mg C5 A:A1253 3.70 Mg N6 A:A1253 2.87 Mg N7 A:A1253 3.12 Mg O A:Hoh3178 2.07 Mg O A:Hoh3179 2.07 Mg O A:Hoh3180 2.07 Mg O A:Hoh3181 2.07 interactive model: Magnesium binding site 29 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A947, A: C965, A: Hoh3182, A: Hoh3183, A: Hoh3184, A: Hoh3185, A: Hoh3186, A: Hoh3187, conact list: Atom Atom Distance (A) Mg OP2 A:A947 4.80 Mg OP2 A:C965 4.58 Mg C5' A:C965 4.66 Mg O5' A:C965 4.88 Mg O A:Hoh3182 2.17 Mg O A:Hoh3183 2.18 Mg O A:Hoh3184 2.18 Mg O A:Hoh3185 2.18 Mg O A:Hoh3186 2.18 Mg O A:Hoh3187 2.18 interactive model: Magnesium binding site 30 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U826, A: U827, A: G2428, A: G2429, A: A2430, A: Hoh3188, A: Hoh3189, A: Hoh3190, conact list: Atom Atom Distance (A) Mg C3' A:U826 4.75 Mg O3' A:U826 3.41 Mg OP1 A:U827 2.35 Mg C6 A:U827 4.19 Mg C5 A:U827 4.23 Mg P A:U827 3.35 Mg OP2 A:U827 4.36 Mg C5' A:U827 4.68 Mg O5' A:U827 4.53 Mg O3' A:G2428 4.66 Mg OP1 A:G2429 4.19 Mg C3' A:G2429 3.98 Mg P A:G2429 3.66 Mg O3' A:G2429 3.88 Mg OP2 A:G2429 2.33 Mg C5' A:G2429 4.67 Mg C4' A:G2429 4.89 Mg O5' A:G2429 4.62 Mg OP1 A:A2430 2.96 Mg P A:A2430 3.04 Mg O4' A:A2430 4.82 Mg OP2 A:A2430 2.41 Mg O5' A:A2430 4.43 Mg O A:Hoh3188 2.17 Mg O A:Hoh3189 2.18 Mg O A:Hoh3190 2.18 interactive model: Magnesium binding site 31 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G831, A: U832, A: C944, A: A945, A: Hoh3191, A: Hoh3192, A: Hoh3193, A: Hoh3194, A: Hoh3195, conact list: Atom Atom Distance (A) Mg C6 A:G831 4.98 Mg C5 A:G831 4.92 Mg N7 A:G831 4.14 Mg OP2 A:G831 4.32 Mg O6 A:G831 4.35 Mg C4 A:U832 4.68 Mg O4 A:U832 3.75 Mg C3' A:C944 4.20 Mg C2 A:C944 4.99 Mg O2 A:C944 4.74 Mg O3' A:C944 4.24 Mg C2' A:C944 4.29 Mg OP1 A:A945 2.50 Mg P A:A945 3.60 Mg OP2 A:A945 3.99 Mg O5' A:A945 4.92 Mg O A:Hoh3191 2.08 Mg O A:Hoh3192 2.08 Mg O A:Hoh3193 2.08 Mg O A:Hoh3194 2.07 Mg O A:Hoh3195 2.09 interactive model: Magnesium binding site 32 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A821, A: G822, A: C823, A: C944, A: A945, A: C946, A: Hoh3196, A: Hoh3197, A: Hoh3198, A: Hoh3199, conact list: Atom Atom Distance (A) Mg O3' A:A821 4.19 Mg O2' A:A821 4.65 Mg P A:G822 4.64 Mg OP2 A:G822 3.81 Mg C5' A:G822 4.42 Mg OP2 A:C823 4.86 Mg C3' A:C944 4.78 Mg O3' A:C944 3.57 Mg O2' A:C944 4.26 Mg P A:A945 3.95 Mg OP2 A:A945 3.09 Mg C5' A:A945 4.30 Mg O5' A:A945 4.63 Mg OP1 A:C946 3.99 Mg P A:C946 3.82 Mg OP2 A:C946 2.75 Mg O5' A:C946 4.68 Mg O A:Hoh3196 2.07 Mg O A:Hoh3197 2.07 Mg O A:Hoh3198 2.07 Mg O A:Hoh3199 2.07 interactive model: Magnesium binding site 33 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A947, A: C948, A: C961, A: G962, A: U963, A: Hoh3200, A: Hoh3201, A: Hoh3202, A: Hoh3206, conact list: Atom Atom Distance (A) Mg OP1 A:A947 4.88 Mg C3' A:A947 4.50 Mg O3' A:A947 4.01 Mg OP1 A:C948 2.83 Mg P A:C948 3.17 Mg OP2 A:C948 2.79 Mg O5' A:C948 4.58 Mg O3' A:C961 4.89 Mg OP1 A:G962 3.31 Mg C3' A:G962 4.66 Mg P A:G962 3.86 Mg OP2 A:G962 3.40 Mg P A:U963 4.18 Mg OP2 A:U963 2.74 Mg O5' A:U963 4.57 Mg O A:Hoh3200 2.18 Mg O A:Hoh3201 2.18 Mg O A:Hoh3202 2.18 Mg O A:Hoh3206 4.10 interactive model: Magnesium binding site 34 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A947, A: G962, A: U963, A: C964, A: A2497, A: Hoh3203, A: Hoh3204, A: Hoh3205, A: Hoh3206, A: Hoh3207, conact list: Atom Atom Distance (A) Mg OP1 A:A947 4.01 Mg O3' A:G962 4.97 Mg OP1 A:U963 2.69 Mg C3' A:U963 4.68 Mg P A:U963 3.46 Mg OP2 A:U963 3.68 Mg C5' A:U963 4.31 Mg O5' A:U963 3.73 Mg OP2 A:C964 4.58 Mg OP1 A:A2497 4.55 Mg C5' A:A2497 4.68 Mg O A:Hoh3203 2.08 Mg O A:Hoh3204 2.08 Mg O A:Hoh3205 2.08 Mg O A:Hoh3206 2.08 Mg O A:Hoh3207 2.09 interactive model: Magnesium binding site 35 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C998, A: U999, A: C1152, A: C1153, A: G1154, A: Hoh3208, A: Hoh3209, A: Hoh3210, A: Hoh3211, conact list: Atom Atom Distance (A) Mg OP1 A:C998 3.66 Mg C3' A:C998 4.30 Mg P A:C998 4.37 Mg O3' A:C998 3.83 Mg OP2 A:C998 4.62 Mg C5' A:C998 4.64 Mg O5' A:C998 4.37 Mg OP1 A:U999 3.32 Mg P A:U999 3.43 Mg OP2 A:U999 3.03 Mg O5' A:U999 4.98 Mg C3' A:C1152 4.39 Mg O3' A:C1152 4.32 Mg C5' A:C1152 4.79 Mg O5' A:C1152 4.46 Mg OP1 A:C1153 4.72 Mg P A:C1153 4.00 Mg OP2 A:C1153 2.79 Mg O6 A:G1154 4.89 Mg O A:Hoh3208 2.07 Mg O A:Hoh3209 2.07 Mg O A:Hoh3210 2.07 Mg O A:Hoh3211 2.07 interactive model: Magnesium binding site 36 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C998, A: A1155, A: A1156, A: G1157, Q: Arg54, A: Hoh3212, A: Hoh3213, A: Hoh3214, A: Hoh3215, A: Hoh3216, conact list: Atom Atom Distance (A) Mg N4 A:C998 4.55 Mg C3' A:A1155 4.42 Mg O3' A:A1155 4.76 Mg OP2 A:A1155 4.62 Mg C5' A:A1155 4.91 Mg O5' A:A1155 4.24 Mg P A:A1156 3.99 Mg OP2 A:A1156 2.69 Mg C5' A:A1156 4.57 Mg O5' A:A1156 4.07 Mg O6 A:G1157 4.52 Mg CD Q:Arg54 4.24 Mg CG Q:Arg54 4.27 Mg NE Q:Arg54 4.57 Mg O A:Hoh3212 2.08 Mg O A:Hoh3213 2.08 Mg O A:Hoh3214 2.08 Mg O A:Hoh3215 2.08 Mg O A:Hoh3216 2.08 interactive model: Magnesium binding site 37 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 37 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C816, A: C817, A: G818, A: G1186, A: G1187, A: Hoh3217, A: Hoh3218, A: Hoh3219, A: Hoh3220, A: Hoh3221, conact list: Atom Atom Distance (A) Mg P A:C816 4.55 Mg OP2 A:C816 3.27 Mg OP2 A:C817 4.85 Mg O6 A:G818 4.81 Mg O3' A:G1186 4.81 Mg OP1 A:G1187 3.49 Mg C8 A:G1187 4.50 Mg P A:G1187 3.47 Mg N7 A:G1187 4.40 Mg OP2 A:G1187 2.62 Mg O5' A:G1187 4.22 Mg O A:Hoh3217 2.08 Mg O A:Hoh3218 2.08 Mg O A:Hoh3219 2.08 Mg O A:Hoh3220 2.08 Mg O A:Hoh3221 2.08 interactive model: Magnesium binding site 38 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 38 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1266, A: U1267, A: A2009, A: G2010, A: U2011, A: G2012, A: Hoh3222, A: Hoh3223, A: Hoh3224, A: Hoh3225, A: Hoh3226, A: Hoh3227, conact list: Atom Atom Distance (A) Mg O2' A:G1266 4.54 Mg OP1 A:U1267 4.01 Mg P A:U1267 4.59 Mg OP2 A:U1267 4.15 Mg C6 A:A2009 4.83 Mg C5 A:A2009 4.70 Mg N6 A:A2009 4.42 Mg N7 A:A2009 4.23 Mg N7 A:G2010 4.34 Mg O6 A:G2010 4.77 Mg O4 A:U2011 4.60 Mg N1 A:G2012 4.83 Mg O6 A:G2012 4.70 Mg O A:Hoh3222 2.18 Mg O A:Hoh3223 2.19 Mg O A:Hoh3224 2.18 Mg O A:Hoh3225 2.18 Mg O A:Hoh3226 2.17 Mg O A:Hoh3227 2.18 interactive model: Magnesium binding site 39 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 39 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1267, A: A1268, A: A2005, A: C2006, A: G2048, A: G2049, A: Hoh3228, A: Hoh3229, A: Hoh3230, A: Hoh3231, A: Hoh3572, conact list: Atom Atom Distance (A) Mg C3' A:U1267 4.90 Mg O3' A:U1267 3.53 Mg OP1 A:A1268 2.83 Mg P A:A1268 3.76 Mg C5' A:A1268 4.27 Mg O5' A:A1268 4.54 Mg O3' A:A2005 4.77 Mg OP1 A:C2006 3.09 Mg P A:C2006 4.46 Mg OP1 A:G2048 3.94 Mg P A:G2048 4.87 Mg OP2 A:G2049 4.40 Mg O A:Hoh3228 2.07 Mg O A:Hoh3229 2.08 Mg O A:Hoh3230 2.07 Mg O A:Hoh3231 2.07 Mg O A:Hoh3572 4.19 interactive model: Magnesium binding site 40 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 40 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1268, A: A1269, A: G2004, A: A2005, A: C2006, A: Hoh3232, A: Hoh3233, A: Hoh3234, A: Hoh3235, conact list: Atom Atom Distance (A) Mg OP1 A:A1268 4.68 Mg P A:A1268 4.66 Mg OP2 A:A1268 3.90 Mg O5' A:A1268 4.84 Mg N7 A:A1269 4.72 Mg OP2 A:A1269 3.65 Mg O3' A:G2004 4.88 Mg OP1 A:A2005 2.43 Mg P A:A2005 3.78 Mg OP2 A:A2005 4.47 Mg C5' A:A2005 4.43 Mg O5' A:A2005 4.42 Mg OP2 A:C2006 3.74 Mg O A:Hoh3232 2.07 Mg O A:Hoh3233 2.07 Mg O A:Hoh3234 2.07 Mg O A:Hoh3235 2.07 interactive model: Magnesium binding site 41 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 41 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1270, A: G1271, A: A1272, A: C1646, A: U1647, A: U1648, A: G1649, A: Hoh3236, A: Hoh3237, conact list: Atom Atom Distance (A) Mg O3' A:C1270 4.23 Mg P A:G1271 4.00 Mg O3' A:G1271 4.97 Mg OP2 A:G1271 2.79 Mg O5' A:G1271 4.44 Mg OP1 A:A1272 2.72 Mg P A:A1272 4.11 Mg O5' A:A1272 4.45 Mg O3' A:C1646 4.95 Mg OP1 A:U1647 2.46 Mg P A:U1647 3.72 Mg O3' A:U1647 4.87 Mg OP2 A:U1647 4.30 Mg C5' A:U1647 3.84 Mg C4' A:U1647 4.81 Mg O5' A:U1647 4.28 Mg OP1 A:U1648 2.53 Mg P A:U1648 3.72 Mg OP2 A:U1648 4.04 Mg C5' A:U1648 4.64 Mg O5' A:U1648 4.73 Mg OP2 A:G1649 4.89 Mg O A:Hoh3236 2.08 Mg O A:Hoh3237 2.08 interactive model: Magnesium binding site 42 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 42 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1312, A: U1313, A: G1334, T: Val67, T: Lys68, A: Hoh3238, A: Hoh3239, A: Hoh3240, T: Hoh255, T: Hoh257, conact list: Atom Atom Distance (A) Mg C3' A:U1312 4.96 Mg O3' A:U1312 3.87 Mg OP1 A:U1313 3.03 Mg P A:U1313 4.09 Mg OP1 A:G1334 4.79 Mg OP2 A:G1334 4.72 Mg O T:Val67 4.63 Mg CD T:Lys68 4.41 Mg CG T:Lys68 4.43 Mg O A:Hoh3238 2.08 Mg O A:Hoh3239 2.08 Mg O A:Hoh3240 2.08 Mg O T:Hoh255 2.08 Mg O T:Hoh257 2.08 interactive model: Magnesium binding site 43 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 43 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1313, A: C1314, A: G1331, A: G1332, A: G1333, A: G1334, A: C1335, A: Hoh3241, A: Hoh3242, A: Hoh3243, A: Hoh3244, A: Hoh3245, conact list: Atom Atom Distance (A) Mg OP1 A:U1313 4.62 Mg C5' A:U1313 4.52 Mg P A:C1314 4.83 Mg OP2 A:C1314 3.79 Mg O2' A:G1331 4.72 Mg P A:G1332 4.61 Mg OP2 A:G1332 3.94 Mg C4' A:G1332 5.00 Mg O5' A:G1332 3.90 Mg OP1 A:G1333 4.57 Mg P A:G1333 3.95 Mg OP2 A:G1333 2.65 Mg O5' A:G1333 4.39 Mg OP2 A:G1334 4.94 Mg N4 A:C1335 4.53 Mg O A:Hoh3241 2.08 Mg O A:Hoh3242 2.08 Mg O A:Hoh3243 2.08 Mg O A:Hoh3244 2.08 Mg O A:Hoh3245 2.08 interactive model: Magnesium binding site 44 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 44 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1351, A: C1376, A: G1377, A: Hoh3246, A: Hoh3247, A: Hoh3248, A: Hoh3249, A: Hoh3250, A: Hoh3251, conact list: Atom Atom Distance (A) Mg OP2 A:C1351 4.40 Mg C3' A:C1376 4.83 Mg C6 A:C1376 4.91 Mg P A:C1376 4.30 Mg OP2 A:C1376 3.20 Mg C5' A:C1376 3.96 Mg C4' A:C1376 4.90 Mg O5' A:C1376 4.28 Mg N7 A:G1377 4.74 Mg OP2 A:G1377 4.21 Mg O A:Hoh3246 2.18 Mg O A:Hoh3247 2.18 Mg O A:Hoh3248 2.19 Mg O A:Hoh3249 2.18 Mg O A:Hoh3250 2.18 Mg O A:Hoh3251 2.19 interactive model: Magnesium binding site 45 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 45 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1357, A: G1358, A: G1371, A: Hoh3252, A: Hoh3253, A: Hoh3254, A: Hoh3255, conact list: Atom Atom Distance (A) Mg C6 A:C1357 4.80 Mg C5 A:C1357 4.48 Mg OP2 A:C1357 4.15 Mg N9 A:G1358 4.86 Mg C8 A:G1358 3.77 Mg C6 A:G1358 3.46 Mg N1 A:G1358 4.84 Mg C5 A:G1358 3.36 Mg N7 A:G1358 2.62 Mg C4 A:G1358 4.66 Mg OP2 A:G1358 4.24 Mg O6 A:G1358 2.93 Mg N9 A:G1371 4.66 Mg C8 A:G1371 3.59 Mg C6 A:G1371 3.81 Mg C5 A:G1371 3.48 Mg N7 A:G1371 2.68 Mg C4 A:G1371 4.61 Mg OP2 A:G1371 3.92 Mg O6 A:G1371 3.52 Mg O A:Hoh3252 2.07 Mg O A:Hoh3253 2.07 Mg O A:Hoh3254 2.07 Mg O A:Hoh3255 2.07 interactive model: Magnesium binding site 46 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 46 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1393, A: U1394, A: A1395, A: A1603, A: C1604, A: Hoh3256, A: Hoh3257, A: Hoh3258, A: Hoh3259, A: Hoh3261, conact list: Atom Atom Distance (A) Mg O3' A:A1393 4.41 Mg OP1 A:U1394 2.47 Mg P A:U1394 3.88 Mg OP2 A:U1394 4.79 Mg C5' A:U1394 4.88 Mg O5' A:U1394 4.88 Mg OP1 A:A1395 4.65 Mg P A:A1395 4.66 Mg OP2 A:A1395 3.86 Mg O3' A:A1603 4.41 Mg OP1 A:C1604 2.56 Mg P A:C1604 3.79 Mg C5' A:C1604 3.96 Mg O5' A:C1604 4.13 Mg O A:Hoh3256 2.07 Mg O A:Hoh3257 2.08 Mg O A:Hoh3258 2.07 Mg O A:Hoh3259 2.07 Mg O A:Hoh3261 4.83 interactive model: Magnesium binding site 47 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 47 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1306, A: U1394, A: A1395, A: U1602, A: A1603, A: C1604, A: Hoh3256, A: Hoh3260, A: Hoh3261, A: Hoh3262, conact list: Atom Atom Distance (A) Mg OP1 A:C1306 4.54 Mg O3' A:U1394 4.25 Mg OP1 A:A1395 2.66 Mg P A:A1395 3.99 Mg C5' A:A1395 4.89 Mg O5' A:A1395 4.89 Mg O3' A:U1602 4.45 Mg OP1 A:A1603 2.71 Mg C3' A:A1603 4.56 Mg P A:A1603 3.08 Mg O3' A:A1603 4.27 Mg OP2 A:A1603 2.68 Mg C5' A:A1603 4.62 Mg O5' A:A1603 4.00 Mg OP1 A:C1604 3.46 Mg P A:C1604 3.27 Mg OP2 A:C1604 2.24 Mg O5' A:C1604 4.38 Mg O A:Hoh3256 4.77 Mg O A:Hoh3260 2.07 Mg O A:Hoh3261 2.07 Mg O A:Hoh3262 2.07 interactive model: Magnesium binding site 48 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 48 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1453, A: C1454, A: G1455, A: G1456, A: U1457, A: Hoh3263, A: Hoh3264, A: Hoh3265, A: Hoh3266, A: Hoh3267, conact list: Atom Atom Distance (A) Mg OP1 A:A1453 4.59 Mg O2' A:C1454 4.65 Mg P A:G1455 4.72 Mg OP2 A:G1455 3.25 Mg N7 A:G1456 4.87 Mg OP2 A:G1456 3.97 Mg O4 A:U1457 4.66 Mg O A:Hoh3263 2.08 Mg O A:Hoh3264 2.08 Mg O A:Hoh3265 2.08 Mg O A:Hoh3266 2.08 Mg O A:Hoh3267 2.08 interactive model: Magnesium binding site 49 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 49 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1271, A: A1272, A: U1325, A: A1616, A: C1617, A: C1646, A: U1647, A: Hoh3268, A: Hoh3269, A: Hoh3270, A: Hoh3271, A: Hoh3272, conact list: Atom Atom Distance (A) Mg C8 A:G1271 4.66 Mg N7 A:G1271 4.65 Mg OP2 A:A1272 5.00 Mg OP1 A:U1325 4.99 Mg O3' A:A1616 4.52 Mg O2' A:A1616 4.42 Mg OP1 A:C1617 4.93 Mg C5' A:C1617 4.94 Mg C3' A:C1646 4.79 Mg O3' A:C1646 3.74 Mg C2' A:C1646 4.71 Mg O2' A:C1646 3.93 Mg OP1 A:U1647 4.78 Mg P A:U1647 3.83 Mg OP2 A:U1647 2.82 Mg O5' A:U1647 4.97 Mg O A:Hoh3268 2.08 Mg O A:Hoh3269 2.08 Mg O A:Hoh3270 2.08 Mg O A:Hoh3271 2.08 Mg O A:Hoh3272 2.08 interactive model: Magnesium binding site 50 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 50 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1663, A: A1664, A: A1665, A: G1666, A: G1667, A: G1992, A: Hoh3273, A: Hoh3274, A: Hoh3275, A: Hoh3276, A: Hoh3277, conact list: Atom Atom Distance (A) Mg C3' A:G1663 4.54 Mg O3' A:G1663 4.65 Mg C2' A:G1663 4.39 Mg OP1 A:A1664 4.69 Mg C8 A:A1664 4.45 Mg C5 A:A1664 4.67 Mg N6 A:A1664 4.89 Mg P A:A1664 3.85 Mg N7 A:A1664 3.90 Mg OP2 A:A1664 2.39 Mg O5' A:A1664 4.60 Mg C8 A:A1665 4.94 Mg C6 A:A1665 4.77 Mg C5 A:A1665 4.68 Mg N6 A:A1665 3.98 Mg N7 A:A1665 3.89 Mg C6 A:G1666 4.95 Mg N7 A:G1666 4.41 Mg O6 A:G1666 4.21 Mg N1 A:G1667 4.67 Mg O6 A:G1667 4.73 Mg OP1 A:G1992 4.54 Mg C6 A:G1992 4.79 Mg C5 A:G1992 4.72 Mg N7 A:G1992 4.41 Mg OP2 A:G1992 4.51 Mg O6 A:G1992 4.56 Mg O A:Hoh3273 2.08 Mg O A:Hoh3274 2.09 Mg O A:Hoh3275 2.08 Mg O A:Hoh3276 2.08 Mg O A:Hoh3277 2.08 interactive model: Magnesium binding site 51 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 51 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1669, A: G1954, A: C1986, A: A1987, A: G2550, A: C2551, A: Hoh3278, A: Hoh3279, A: Hoh3280, A: Hoh3281, A: Hoh3282, A: Hoh3283, conact list: Atom Atom Distance (A) Mg OP1 A:A1669 4.53 Mg C6 A:G1954 4.89 Mg N1 A:G1954 4.39 Mg O6 A:G1954 4.82 Mg OP1 A:C1986 4.53 Mg OP2 A:A1987 4.23 Mg O3' A:G2550 4.59 Mg OP1 A:C2551 4.17 Mg P A:C2551 4.94 Mg O A:Hoh3278 2.19 Mg O A:Hoh3279 2.17 Mg O A:Hoh3280 2.18 Mg O A:Hoh3281 2.17 Mg O A:Hoh3282 2.18 Mg O A:Hoh3283 2.18 interactive model: Magnesium binding site 52 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 52 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1670, A: U1671, A: A1672, A: G2550, A: Hoh3284, A: Hoh3285, A: Hoh3286, A: Hoh3287, conact list: Atom Atom Distance (A) Mg OP1 A:C1670 3.68 Mg P A:C1670 4.93 Mg OP1 A:U1671 4.48 Mg P A:U1671 3.87 Mg OP2 A:U1671 2.72 Mg O5' A:U1671 4.13 Mg OP2 A:A1672 4.38 Mg OP2 A:G2550 4.91 Mg O A:Hoh3284 2.07 Mg O A:Hoh3285 2.07 Mg O A:Hoh3286 2.07 Mg O A:Hoh3287 2.07 interactive model: Magnesium binding site 53 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 53 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1677, A: A1678, A: A1679, A: Hoh3288, A: Hoh3289, A: Hoh3290, A: Hoh3291, A: Hoh3292, conact list: Atom Atom Distance (A) Mg C3' A:A1677 4.87 Mg O3' A:A1677 4.78 Mg C5' A:A1677 4.39 Mg OP1 A:A1678 4.47 Mg C8 A:A1678 4.65 Mg P A:A1678 3.64 Mg N7 A:A1678 4.78 Mg OP2 A:A1678 2.36 Mg O5' A:A1678 3.89 Mg N6 A:A1679 4.48 Mg N7 A:A1679 4.16 Mg OP2 A:A1679 4.81 Mg O A:Hoh3288 2.08 Mg O A:Hoh3289 2.08 Mg O A:Hoh3290 2.08 Mg O A:Hoh3291 2.08 Mg O A:Hoh3292 2.08 interactive model: Magnesium binding site 54 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 54 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1772, A: A1773, A: C1774, A: U1775, A: G1776, A: A1786, A: A1787, A: C1788, A: A1789, A: Hoh3293, A: Hoh3294, A: Hoh3295, A: Hoh3296, A: Hoh3297, conact list: Atom Atom Distance (A) Mg N3 A:A1772 4.21 Mg C2 A:A1772 4.95 Mg C1' A:A1772 4.56 Mg C2' A:A1772 4.58 Mg O2' A:A1772 3.76 Mg O3' A:A1773 4.74 Mg OP1 A:C1774 2.43 Mg P A:C1774 3.72 Mg OP2 A:C1774 4.19 Mg O5' A:C1774 4.68 Mg OP2 A:U1775 4.91 Mg O6 A:G1776 4.38 Mg OP1 A:A1786 4.55 Mg P A:A1786 4.53 Mg OP2 A:A1786 3.74 Mg C5' A:A1786 4.15 Mg O5' A:A1786 4.78 Mg N6 A:A1787 4.93 Mg N4 A:C1788 4.75 Mg N6 A:A1789 4.73 Mg O A:Hoh3293 2.08 Mg O A:Hoh3294 2.09 Mg O A:Hoh3295 2.08 Mg O A:Hoh3296 2.08 Mg O A:Hoh3297 2.08 interactive model: Magnesium binding site 55 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 55 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1775, A: G1776, A: A1981, A: Hoh3298, A: Hoh3299, A: Hoh3300, A: Hoh3301, A: Hoh3302, conact list: Atom Atom Distance (A) Mg OP1 A:U1775 4.55 Mg C3' A:U1775 4.35 Mg P A:U1775 4.93 Mg O3' A:U1775 3.62 Mg OP2 A:U1775 4.87 Mg O5' A:U1775 4.64 Mg OP1 A:G1776 4.97 Mg C8 A:G1776 4.72 Mg P A:G1776 3.58 Mg N7 A:G1776 4.62 Mg OP2 A:G1776 2.60 Mg C5' A:G1776 4.44 Mg O5' A:G1776 3.95 Mg OP1 A:A1981 4.85 Mg OP2 A:A1981 4.71 Mg O A:Hoh3298 2.08 Mg O A:Hoh3299 2.08 Mg O A:Hoh3300 2.08 Mg O A:Hoh3301 2.09 Mg O A:Hoh3302 2.08 interactive model: Magnesium binding site 56 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 56 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1772, A: U1827, A: G1828, A: G1972, A: G1973, C: Arg237, A: Mg3019, A: Hoh3303, A: Hoh3304, A: Hoh3305, A: Hoh3306, A: Hoh3567, C: Hoh338, conact list: Atom Atom Distance (A) Mg OP1 A:A1772 4.15 Mg O3' A:U1827 4.97 Mg OP1 A:G1828 2.48 Mg P A:G1828 3.79 Mg OP2 A:G1828 4.52 Mg C5' A:G1828 4.62 Mg O5' A:G1828 4.28 Mg OP2 A:G1972 4.90 Mg C5' A:G1972 4.50 Mg OP2 A:G1973 4.70 Mg NH1 C:Arg237 4.85 Mg MG A:Mg3019 4.93 Mg O A:Hoh3303 2.08 Mg O A:Hoh3304 2.08 Mg O A:Hoh3305 2.08 Mg O A:Hoh3306 2.08 Mg O A:Hoh3567 3.88 Mg O C:Hoh338 2.08 interactive model: Magnesium binding site 57 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 57 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1915, A: A1916, A: Hoh3307, A: Hoh3308, A: Hoh3309, A: Hoh3310, A: Hoh3311, A: Hoh3312, conact list: Atom Atom Distance (A) Mg OP1 A:U1915 4.94 Mg O3' A:U1915 4.88 Mg OP2 A:U1915 4.90 Mg C5' A:U1915 4.55 Mg O5' A:U1915 4.52 Mg P A:A1916 4.67 Mg OP2 A:A1916 3.69 Mg O A:Hoh3307 2.18 Mg O A:Hoh3308 2.18 Mg O A:Hoh3309 2.19 Mg O A:Hoh3310 2.18 Mg O A:Hoh3311 2.18 Mg O A:Hoh3312 2.18 interactive model: Magnesium binding site 58 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 58 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1936, A: A1937, A: C1958, A: G1959, A: A1960, A: Hoh3313, A: Hoh3314, A: Hoh3315, A: Hoh3316, A: Hoh3317, A: Hoh3318, A: Hoh3556, A: Hoh3557, conact list: Atom Atom Distance (A) Mg OP1 A:A1936 4.30 Mg O3' A:A1936 4.51 Mg OP1 A:A1937 4.66 Mg C5' A:A1937 4.53 Mg C5 A:C1958 4.70 Mg OP2 A:C1958 4.25 Mg N7 A:G1959 4.89 Mg N6 A:A1960 4.97 Mg O A:Hoh3313 2.17 Mg O A:Hoh3314 2.18 Mg O A:Hoh3315 2.18 Mg O A:Hoh3316 2.18 Mg O A:Hoh3317 2.18 Mg O A:Hoh3318 2.18 Mg O A:Hoh3556 4.77 Mg O A:Hoh3557 4.29 interactive model: Magnesium binding site 59 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 59 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1967, A: G1968, A: G1972, A: G1973, A: C2591, A: G2592, A: Hoh3319, A: Hoh3320, A: Hoh3321, A: Hoh3322, conact list: Atom Atom Distance (A) Mg O3' A:C1967 4.12 Mg O2' A:C1967 3.78 Mg OP1 A:G1968 3.62 Mg P A:G1968 4.33 Mg C5' A:G1968 3.59 Mg C4' A:G1968 4.63 Mg O5' A:G1968 4.46 Mg O3' A:G1972 4.86 Mg OP1 A:G1973 3.70 Mg P A:G1973 4.78 Mg C5' A:G1973 4.83 Mg O3' A:C2591 4.05 Mg OP1 A:G2592 3.18 Mg P A:G2592 4.22 Mg O A:Hoh3319 2.08 Mg O A:Hoh3320 2.07 Mg O A:Hoh3321 2.07 Mg O A:Hoh3322 2.07 interactive model: Magnesium binding site 60 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 60 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1834, A: G1835, A: C1836, A: A1900, A: A1969, A: A1970, A: Hoh3323, A: Hoh3324, A: Hoh3325, A: Hoh3326, A: Hoh3327, conact list: Atom Atom Distance (A) Mg O2' A:U1834 4.43 Mg N7 A:G1835 4.51 Mg OP2 A:G1835 4.64 Mg O6 A:G1835 4.72 Mg N4 A:C1836 4.55 Mg OP2 A:A1900 4.00 Mg C5' A:A1900 4.92 Mg O5' A:A1900 4.81 Mg C3' A:A1969 4.65 Mg O3' A:A1969 4.47 Mg C5' A:A1969 4.59 Mg OP1 A:A1970 3.31 Mg P A:A1970 3.35 Mg OP2 A:A1970 2.58 Mg O5' A:A1970 4.52 Mg O A:Hoh3323 2.08 Mg O A:Hoh3324 2.08 Mg O A:Hoh3325 2.08 Mg O A:Hoh3326 2.08 Mg O A:Hoh3327 2.08 interactive model: Magnesium binding site 61 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 61 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1130, A: C2025, A: U2026, A: A2033, A: U2034, A: Hoh3328, A: Hoh3329, A: Hoh3330, A: Hoh3331, A: Hoh3332, A: Hoh3333, conact list: Atom Atom Distance (A) Mg O4 A:U1130 4.77 Mg OP1 A:C2025 4.75 Mg C6 A:C2025 4.83 Mg C5 A:C2025 4.65 Mg P A:C2025 4.30 Mg OP2 A:C2025 3.29 Mg O5' A:C2025 4.38 Mg C5 A:U2026 4.89 Mg O4 A:U2026 4.82 Mg OP1 A:A2033 4.87 Mg C3' A:A2033 4.99 Mg O3' A:A2033 4.93 Mg C2' A:A2033 4.93 Mg O2' A:A2033 4.27 Mg OP2 A:U2034 4.80 Mg O A:Hoh3328 2.08 Mg O A:Hoh3329 2.08 Mg O A:Hoh3330 2.08 Mg O A:Hoh3331 2.08 Mg O A:Hoh3332 2.08 Mg O A:Hoh3333 4.35 interactive model: Magnesium binding site 62 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 62 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U2026, A: G2027, A: Hoh3328, A: Hoh3333, A: Hoh3334, A: Hoh3335, A: Hoh3336, A: Hoh3337, A: Hoh3338, conact list: Atom Atom Distance (A) Mg OP2 A:U2026 4.85 Mg OP2 A:G2027 3.62 Mg O A:Hoh3328 4.95 Mg O A:Hoh3333 2.18 Mg O A:Hoh3334 2.18 Mg O A:Hoh3335 2.19 Mg O A:Hoh3336 2.18 Mg O A:Hoh3337 2.19 Mg O A:Hoh3338 2.19 interactive model: Magnesium binding site 63 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 63 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2050, A: A2051, A: G2578, A: Hoh3339, A: Hoh3340, A: Hoh3341, A: Hoh3342, A: Hoh3343, A: Hoh3344, conact list: Atom Atom Distance (A) Mg OP1 A:C2050 4.86 Mg OP2 A:C2050 4.64 Mg O5' A:C2050 4.97 Mg C8 A:A2051 4.25 Mg N7 A:A2051 4.08 Mg OP2 A:A2051 3.67 Mg OP1 A:G2578 3.69 Mg P A:G2578 4.45 Mg OP2 A:G2578 4.35 Mg O5' A:G2578 5.00 Mg O A:Hoh3339 2.18 Mg O A:Hoh3340 2.18 Mg O A:Hoh3341 2.18 Mg O A:Hoh3342 2.19 Mg O A:Hoh3343 2.18 Mg O A:Hoh3344 2.18 interactive model: Magnesium binding site 64 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 64 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2055, A: G2056, A: G2057, A: A2058, A: A2503, A: U2504, A: G2505, A: Hoh3345, A: Hoh3346, A: Hoh3347, A: Hoh3348, conact list: Atom Atom Distance (A) Mg O3' A:C2055 4.44 Mg C3' A:G2056 4.44 Mg P A:G2056 3.91 Mg O3' A:G2056 4.53 Mg OP2 A:G2056 2.67 Mg C5' A:G2056 4.29 Mg C4' A:G2056 4.98 Mg O5' A:G2056 4.07 Mg OP1 A:G2057 4.33 Mg P A:G2057 3.71 Mg N7 A:G2057 4.86 Mg OP2 A:G2057 2.35 Mg O5' A:G2057 4.70 Mg N6 A:A2058 4.72 Mg N7 A:A2058 4.95 Mg O3' A:A2503 4.54 Mg OP2 A:U2504 4.92 Mg O5' A:U2504 4.38 Mg OP1 A:G2505 4.91 Mg O A:Hoh3345 2.07 Mg O A:Hoh3346 2.07 Mg O A:Hoh3347 2.08 Mg O A:Hoh3348 2.07 interactive model: Magnesium binding site 65 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 65 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2060, A: G2061, A: G2445, A: G2446, A: C2501, A: G2502, A: Hoh3349, A: Hoh3350, A: Hoh3351, A: Hoh3352, A: Hoh3356, conact list: Atom Atom Distance (A) Mg O3' A:A2060 4.45 Mg C2' A:A2060 4.49 Mg O2' A:A2060 3.10 Mg C3' A:G2061 4.55 Mg P A:G2061 4.44 Mg OP2 A:G2061 4.54 Mg C5' A:G2061 3.97 Mg C4' A:G2061 4.84 Mg O5' A:G2061 3.37 Mg C8 A:G2445 4.89 Mg N7 A:G2445 4.60 Mg N7 A:G2446 4.37 Mg OP2 A:G2446 4.96 Mg O6 A:G2446 4.65 Mg C3' A:C2501 5.00 Mg O3' A:C2501 3.89 Mg O2' A:C2501 4.54 Mg P A:G2502 3.63 Mg OP2 A:G2502 2.73 Mg C5' A:G2502 4.93 Mg O5' A:G2502 3.56 Mg O A:Hoh3349 2.08 Mg O A:Hoh3350 2.07 Mg O A:Hoh3351 2.06 Mg O A:Hoh3352 2.07 Mg O A:Hoh3356 3.70 interactive model: Magnesium binding site 66 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 66 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2061, A: A2062, A: C2443, A: G2444, A: G2445, A: Hoh3349, A: Hoh3351, A: Hoh3353, A: Hoh3354, A: Hoh3355, A: Hoh3356, A: Hoh3357, conact list: Atom Atom Distance (A) Mg O3' A:G2061 4.35 Mg OP2 A:G2061 4.86 Mg OP1 A:A2062 2.60 Mg P A:A2062 3.20 Mg OP2 A:A2062 3.00 Mg C5' A:A2062 4.86 Mg O5' A:A2062 4.38 Mg C6 A:C2443 4.63 Mg C5 A:C2443 4.22 Mg C4 A:C2443 4.96 Mg OP2 A:C2443 4.44 Mg C8 A:G2444 4.74 Mg N7 A:G2444 4.10 Mg OP2 A:G2444 3.94 Mg N7 A:G2445 4.71 Mg O A:Hoh3349 4.16 Mg O A:Hoh3351 4.43 Mg O A:Hoh3353 2.08 Mg O A:Hoh3354 2.08 Mg O A:Hoh3355 2.08 Mg O A:Hoh3356 2.08 Mg O A:Hoh3357 2.08 interactive model: Magnesium binding site 67 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 67 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U2074, A: G2238, A: A2241, A: G2242, A: U2243, A: Hoh3358, A: Hoh3359, A: Hoh3360, A: Hoh3361, A: Hoh3362, A: Hoh3363, conact list: Atom Atom Distance (A) Mg C5 A:U2074 4.95 Mg O4 A:U2074 4.53 Mg C8 A:G2238 4.67 Mg C8 A:A2241 4.84 Mg C5 A:A2241 4.98 Mg N7 A:A2241 4.41 Mg N7 A:G2242 4.39 Mg O6 A:G2242 4.52 Mg O4 A:U2243 4.42 Mg O A:Hoh3358 2.18 Mg O A:Hoh3359 2.19 Mg O A:Hoh3360 2.18 Mg O A:Hoh3361 2.19 Mg O A:Hoh3362 2.18 Mg O A:Hoh3363 2.18 interactive model: Magnesium binding site 68 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 68 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U2074, A: G2238, A: G2239, A: U2240, C: Pro226, C: His229, C: Pro230, A: Hoh3364, A: Hoh3365, A: Hoh3366, A: Hoh3367, C: Hoh409, conact list: Atom Atom Distance (A) Mg OP1 A:U2074 2.71 Mg P A:U2074 4.07 Mg OP2 A:U2074 4.68 Mg O5' A:U2074 4.78 Mg O3' A:G2238 4.38 Mg O2' A:G2238 4.72 Mg P A:G2239 4.60 Mg OP2 A:G2239 3.64 Mg O5' A:G2239 4.83 Mg OP2 A:U2240 4.37 Mg O C:Pro226 4.10 Mg C C:Pro226 4.82 Mg O C:His229 4.64 Mg C C:His229 4.80 Mg O C:Pro230 4.93 Mg N C:Pro230 4.52 Mg CB C:Pro230 4.77 Mg C C:Pro230 4.93 Mg CG C:Pro230 4.90 Mg CA C:Pro230 4.03 Mg O A:Hoh3364 2.08 Mg O A:Hoh3365 2.08 Mg O A:Hoh3366 2.08 Mg O A:Hoh3367 2.08 Mg O C:Hoh409 2.08 interactive model: Magnesium binding site 69 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 69 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2066, A: A2247, A: C2248, A: U2249, A: G2253, A: Hoh3368, A: Hoh3369, A: Hoh3370, A: Hoh3371, conact list: Atom Atom Distance (A) Mg OP1 A:C2066 3.69 Mg P A:C2066 4.85 Mg C5' A:C2066 4.66 Mg O5' A:C2066 4.84 Mg OP1 A:A2247 4.18 Mg C3' A:A2247 4.18 Mg P A:A2247 4.31 Mg O3' A:A2247 4.28 Mg OP2 A:A2247 4.34 Mg C5' A:A2247 4.32 Mg C4' A:A2247 4.84 Mg O5' A:A2247 3.83 Mg OP1 A:C2248 4.70 Mg P A:C2248 3.81 Mg OP2 A:C2248 2.40 Mg O5' A:C2248 4.73 Mg N3 A:U2249 4.59 Mg C5 A:U2249 4.62 Mg C4 A:U2249 3.71 Mg O4 A:U2249 2.52 Mg OP1 A:G2253 4.39 Mg O A:Hoh3368 2.07 Mg O A:Hoh3369 2.07 Mg O A:Hoh3370 2.07 Mg O A:Hoh3371 2.06 interactive model: Magnesium binding site 70 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 70 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2267, A: A2268, A: G2269, A: G2271, A: Hoh3372, A: Hoh3373, A: Hoh3374, A: Hoh3375, A: Hoh3377, conact list: Atom Atom Distance (A) Mg N9 A:A2267 4.25 Mg C3' A:A2267 4.63 Mg C8 A:A2267 2.91 Mg C5 A:A2267 4.30 Mg C1' A:A2267 4.95 Mg N7 A:A2267 2.93 Mg C4 A:A2267 4.98 Mg C2' A:A2267 4.17 Mg O2' A:A2267 4.96 Mg OP1 A:A2268 3.33 Mg P A:A2268 4.78 Mg O3' A:A2268 4.56 Mg OP1 A:G2269 2.74 Mg P A:G2269 4.15 Mg O5' A:G2269 4.91 Mg C6 A:G2271 4.83 Mg O6 A:G2271 3.71 Mg O A:Hoh3372 2.07 Mg O A:Hoh3373 2.06 Mg O A:Hoh3374 2.07 Mg O A:Hoh3375 2.06 Mg O A:Hoh3377 4.17 interactive model: Magnesium binding site 71 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 71 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2266, A: A2267, A: G2269, A: A2270, A: G2271, A: U2272, A: Hoh3373, A: Hoh3376, A: Hoh3377, A: Hoh3378, A: Hoh3379, A: Hoh3380, conact list: Atom Atom Distance (A) Mg O2' A:A2266 3.94 Mg OP2 A:A2267 3.82 Mg O5' A:G2269 4.97 Mg OP1 A:A2270 4.22 Mg P A:A2270 3.80 Mg OP2 A:A2270 2.65 Mg O5' A:A2270 4.35 Mg N7 A:G2271 4.17 Mg OP2 A:G2271 4.23 Mg O6 A:G2271 4.38 Mg O4 A:U2272 4.50 Mg O A:Hoh3373 3.79 Mg O A:Hoh3376 2.08 Mg O A:Hoh3377 2.08 Mg O A:Hoh3378 2.08 Mg O A:Hoh3379 2.08 Mg O A:Hoh3380 2.08 interactive model: Magnesium binding site 72 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 72 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U2302, A: G2303, A: G2304, A: C2310, A: Hoh3381, A: Hoh3382, A: Hoh3383, A: Hoh3384, A: Hoh3385, conact list: Atom Atom Distance (A) Mg C5 A:U2302 4.40 Mg C4 A:U2302 4.36 Mg O4 A:U2302 4.19 Mg C8 A:G2303 4.65 Mg C6 A:G2303 4.43 Mg C5 A:G2303 4.37 Mg N7 A:G2303 3.59 Mg O6 A:G2303 3.76 Mg O6 A:G2304 4.75 Mg OP2 A:C2310 4.62 Mg C5' A:C2310 4.68 Mg O A:Hoh3381 2.08 Mg O A:Hoh3382 2.08 Mg O A:Hoh3383 2.08 Mg O A:Hoh3384 2.08 Mg O A:Hoh3385 2.08 interactive model: Magnesium binding site 73 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 73 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2326, A: C2385, A: A2386, A: U2387, A: G2389, A: Hoh3386, A: Hoh3387, A: Hoh3388, A: Hoh3389, A: Hoh3390, A: Hoh3391, conact list: Atom Atom Distance (A) Mg N4 A:C2326 4.67 Mg O2' A:C2385 4.44 Mg C8 A:A2386 4.84 Mg OP2 A:A2386 3.91 Mg O5' A:A2386 4.82 Mg C5 A:U2387 4.68 Mg OP2 A:U2387 4.44 Mg O4 A:U2387 4.59 Mg O6 A:G2389 4.76 Mg O A:Hoh3386 2.18 Mg O A:Hoh3387 2.18 Mg O A:Hoh3388 2.18 Mg O A:Hoh3389 2.18 Mg O A:Hoh3390 2.18 Mg O A:Hoh3391 2.18 interactive model: Magnesium binding site 74 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 74 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A575, A: U576, A: G2446, A: G2447, A: C2501, A: G2502, A: Hoh3392, A: Hoh3393, A: Hoh3394, A: Hoh3395, A: Hoh3396, conact list: Atom Atom Distance (A) Mg O2' A:A575 4.45 Mg O4' A:U576 4.55 Mg C5' A:U576 4.78 Mg C4' A:U576 4.91 Mg OP1 A:G2446 4.59 Mg P A:G2447 4.56 Mg OP2 A:G2447 3.54 Mg C5' A:G2447 4.43 Mg O5' A:G2447 4.24 Mg OP1 A:C2501 4.72 Mg P A:C2501 4.68 Mg OP2 A:C2501 3.76 Mg OP1 A:G2502 4.56 Mg C8 A:G2502 4.96 Mg N7 A:G2502 4.85 Mg O A:Hoh3392 2.08 Mg O A:Hoh3393 2.08 Mg O A:Hoh3394 2.08 Mg O A:Hoh3395 2.08 Mg O A:Hoh3396 2.08 interactive model: Magnesium binding site 75 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 75 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2453, A: G2454, A: G2455, A: C2496, A: Hoh3397, A: Hoh3398, A: Hoh3399, A: Hoh3400, A: Hoh3401, A: Hoh3402, conact list: Atom Atom Distance (A) Mg N7 A:A2453 4.74 Mg C5 A:G2454 4.94 Mg N7 A:G2454 4.12 Mg OP2 A:G2454 4.82 Mg O6 A:G2454 4.47 Mg C6 A:G2455 4.90 Mg N7 A:G2455 4.97 Mg O6 A:G2455 3.85 Mg N4 A:C2496 4.43 Mg O A:Hoh3397 2.18 Mg O A:Hoh3398 2.18 Mg O A:Hoh3399 2.18 Mg O A:Hoh3400 2.18 Mg O A:Hoh3401 2.19 Mg O A:Hoh3402 2.18 interactive model: Magnesium binding site 76 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 76 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2518, A: U2519, A: C2540, A: A2541, A: Hoh3403, A: Hoh3404, A: Hoh3405, A: Hoh3406, A: Hoh3407, conact list: Atom Atom Distance (A) Mg OP1 A:A2518 3.76 Mg P A:A2518 3.56 Mg OP2 A:A2518 2.78 Mg O5' A:A2518 3.84 Mg OP2 A:U2519 4.42 Mg P A:C2540 4.77 Mg OP2 A:C2540 4.09 Mg O5' A:C2540 4.60 Mg C8 A:A2541 4.82 Mg P A:A2541 4.94 Mg N7 A:A2541 4.42 Mg OP2 A:A2541 3.68 Mg O A:Hoh3403 2.08 Mg O A:Hoh3404 2.08 Mg O A:Hoh3405 2.08 Mg O A:Hoh3406 2.08 Mg O A:Hoh3407 2.08 interactive model: Magnesium binding site 77 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 77 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2549, A: G2550, A: C2551, A: G2557, A: Hoh3408, A: Hoh3409, A: Hoh3410, A: Hoh3411, A: Hoh3412, A: Hoh3413, conact list: Atom Atom Distance (A) Mg C6 A:G2549 4.91 Mg C5 A:G2549 5.00 Mg N7 A:G2549 4.50 Mg O6 A:G2549 4.32 Mg O6 A:G2550 4.45 Mg N4 A:C2551 4.58 Mg O6 A:G2557 4.35 Mg O A:Hoh3408 2.18 Mg O A:Hoh3409 2.18 Mg O A:Hoh3410 2.19 Mg O A:Hoh3411 2.18 Mg O A:Hoh3412 2.18 Mg O A:Hoh3413 2.18 interactive model: Magnesium binding site 78 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 78 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2576, A: G2578, A: C2579, A: U2580, A: C2610, A: C2611, A: C2612, A: Hoh3414, A: Hoh3415, A: Hoh3416, A: Hoh3417, conact list: Atom Atom Distance (A) Mg O2' A:G2576 4.36 Mg O3' A:G2578 4.82 Mg OP1 A:C2579 2.71 Mg P A:C2579 3.61 Mg OP2 A:C2579 3.64 Mg O5' A:C2579 4.59 Mg OP2 A:U2580 4.56 Mg O3' A:C2610 4.02 Mg O2' A:C2610 4.20 Mg OP1 A:C2611 4.90 Mg P A:C2611 3.70 Mg OP2 A:C2611 2.39 Mg O5' A:C2611 4.34 Mg OP2 A:C2612 4.91 Mg O A:Hoh3414 2.07 Mg O A:Hoh3415 2.07 Mg O A:Hoh3416 2.07 Mg O A:Hoh3417 2.07 interactive model: Magnesium binding site 79 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 79 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2439, A: A2587, A: G2588, A: A2589, C: Glu235, A: Hoh3418, A: Hoh3419, A: Hoh3420, C: Hoh477, C: Hoh479, conact list: Atom Atom Distance (A) Mg C2' A:A2439 4.90 Mg O2' A:A2439 3.58 Mg OP1 A:A2587 3.13 Mg P A:A2587 4.50 Mg C5' A:A2587 4.99 Mg O5' A:A2587 4.84 Mg P A:G2588 4.87 Mg OP2 A:G2588 3.53 Mg N7 A:A2589 4.87 Mg OE2 C:Glu235 3.85 Mg CD C:Glu235 4.81 Mg CG C:Glu235 4.92 Mg O A:Hoh3418 2.08 Mg O A:Hoh3419 2.07 Mg O A:Hoh3420 2.08 Mg O C:Hoh477 2.08 Mg O C:Hoh479 2.08 interactive model: Magnesium binding site 80 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 80 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2710, A: A2711, A: U2713, A: G2714, N: Ser15, A: Hoh3421, A: Hoh3422, A: Hoh3423, A: Hoh3424, conact list: Atom Atom Distance (A) Mg OP1 A:C2710 4.13 Mg C3' A:C2710 4.85 Mg P A:C2710 4.39 Mg O3' A:C2710 4.60 Mg OP2 A:C2710 4.29 Mg O5' A:C2710 4.23 Mg OP1 A:A2711 4.15 Mg P A:A2711 3.79 Mg OP2 A:A2711 2.63 Mg O5' A:A2711 4.96 Mg C3' A:U2713 4.56 Mg O3' A:U2713 3.84 Mg C5' A:U2713 4.92 Mg C4' A:U2713 4.32 Mg O5' A:U2713 4.22 Mg OP1 A:G2714 4.18 Mg P A:G2714 3.53 Mg OP2 A:G2714 2.48 Mg O5' A:G2714 4.83 Mg OG N:Ser15 4.65 Mg O A:Hoh3421 2.07 Mg O A:Hoh3422 2.07 Mg O A:Hoh3423 2.07 Mg O A:Hoh3424 2.07 interactive model: Magnesium binding site 81 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 81 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A217, A: A218, A: U427, A: A428, A: Hoh3425, A: Hoh3426, A: Hoh3427, A: Hoh3428, conact list: Atom Atom Distance (A) Mg OP1 A:A217 4.11 Mg C3' A:A217 4.35 Mg P A:A217 3.87 Mg O3' A:A217 4.85 Mg OP2 A:A217 3.40 Mg C5' A:A217 4.69 Mg O5' A:A217 3.58 Mg OP1 A:A218 4.94 Mg C8 A:A218 4.08 Mg C5 A:A218 4.83 Mg P A:A218 4.09 Mg N7 A:A218 3.58 Mg OP2 A:A218 2.62 Mg O5' A:A218 4.68 Mg OP2 A:U427 4.56 Mg OP1 A:A428 4.80 Mg P A:A428 4.92 Mg OP2 A:A428 4.00 Mg O A:Hoh3425 2.07 Mg O A:Hoh3426 2.07 Mg O A:Hoh3427 2.07 Mg O A:Hoh3428 2.07 interactive model: Magnesium binding site 82 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 82 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G298, A: A299, A: A300, A: G338, A: U339, U: Lys3, U: Lys96, A: Hoh3429, A: Hoh3430, A: Hoh3431, A: Hoh3432, U: Hoh491, conact list: Atom Atom Distance (A) Mg C3' A:G298 4.66 Mg O3' A:G298 4.36 Mg OP1 A:A299 3.89 Mg C8 A:A299 4.87 Mg P A:A299 3.63 Mg N7 A:A299 4.72 Mg OP2 A:A299 2.62 Mg O5' A:A299 4.93 Mg N6 A:A300 4.14 Mg N7 A:G338 4.93 Mg O6 A:G338 4.41 Mg C4 A:U339 4.75 Mg O4 A:U339 3.90 Mg NZ U:Lys3 4.99 Mg CE U:Lys96 4.78 Mg O A:Hoh3429 2.08 Mg O A:Hoh3430 2.08 Mg O A:Hoh3431 2.08 Mg O A:Hoh3432 2.08 Mg O U:Hoh491 2.08 interactive model: Magnesium binding site 83 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 83 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G411, A: A412, A: C413, A: C414, A: A2406, A: A2407, A: U2408, A: G2410, A: Hoh3433, A: Hoh3434, A: Hoh3435, A: Hoh3436, conact list: Atom Atom Distance (A) Mg OP1 A:G411 3.41 Mg P A:G411 4.87 Mg OP1 A:A412 4.83 Mg N4 A:C413 3.86 Mg N4 A:C414 4.76 Mg O3' A:A2406 4.81 Mg OP1 A:A2407 2.42 Mg P A:A2407 3.58 Mg N7 A:A2407 4.69 Mg OP2 A:A2407 3.97 Mg O5' A:A2407 4.44 Mg C5 A:U2408 4.56 Mg C4 A:U2408 4.78 Mg O4 A:U2408 4.17 Mg O6 A:G2410 4.63 Mg O A:Hoh3433 2.07 Mg O A:Hoh3434 2.07 Mg O A:Hoh3435 2.07 Mg O A:Hoh3436 2.07 interactive model: Magnesium binding site 84 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 84 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U571, A: A572, A: U573, A: A983, A: G2029, A: Hoh3437, A: Hoh3438, A: Hoh3439, A: Hoh3440, A: Hoh3441, conact list: Atom Atom Distance (A) Mg O3' A:U571 4.25 Mg OP1 A:A572 2.92 Mg C8 A:A572 4.81 Mg P A:A572 4.17 Mg N7 A:A572 4.31 Mg C5 A:U573 3.95 Mg C4 A:U573 4.19 Mg O4 A:U573 3.78 Mg OP1 A:A983 3.74 Mg P A:A983 4.64 Mg O5' A:A983 4.47 Mg O2' A:G2029 4.77 Mg O A:Hoh3437 2.08 Mg O A:Hoh3438 2.08 Mg O A:Hoh3439 2.08 Mg O A:Hoh3440 2.09 Mg O A:Hoh3441 2.08 interactive model: Magnesium binding site 85 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 85 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C817, A: G818, A: G1186, A: G1187, A: Hoh3442, A: Hoh3443, A: Hoh3444, A: Hoh3445, conact list: Atom Atom Distance (A) Mg OP1 A:C817 4.94 Mg OP1 A:G818 4.26 Mg P A:G818 4.00 Mg OP2 A:G818 2.86 Mg O5' A:G818 4.81 Mg OP1 A:G1186 4.75 Mg N7 A:G1186 4.26 Mg O6 A:G1186 4.75 Mg C2 A:G1187 4.55 Mg C6 A:G1187 3.25 Mg N1 A:G1187 3.41 Mg C5 A:G1187 4.39 Mg O6 A:G1187 2.71 Mg O A:Hoh3442 2.07 Mg O A:Hoh3443 2.07 Mg O A:Hoh3444 2.07 Mg O A:Hoh3445 2.07 interactive model: Magnesium binding site 86 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 86 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U842, A: A933, A: Hoh3446, A: Hoh3447, A: Hoh3448, A: Hoh3449, A: Hoh3450, A: Hoh3451, conact list: Atom Atom Distance (A) Mg O4 A:U842 4.50 Mg OP2 A:A933 4.91 Mg O A:Hoh3446 2.18 Mg O A:Hoh3447 2.18 Mg O A:Hoh3448 2.18 Mg O A:Hoh3449 2.18 Mg O A:Hoh3450 2.18 Mg O A:Hoh3451 2.18 interactive model: Magnesium binding site 87 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 87 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G976, A: G977, A: G978, A: Hoh3452, A: Hoh3453, A: Hoh3454, A: Hoh3455, A: Hoh3456, A: Hoh3457, conact list: Atom Atom Distance (A) Mg C8 A:G976 4.69 Mg C5 A:G976 4.83 Mg N7 A:G976 4.48 Mg OP2 A:G976 4.10 Mg O5' A:G976 4.95 Mg C8 A:G977 4.32 Mg C6 A:G977 4.53 Mg C5 A:G977 4.26 Mg N7 A:G977 3.41 Mg O6 A:G977 4.11 Mg N7 A:G978 4.71 Mg O6 A:G978 4.69 Mg O A:Hoh3452 2.18 Mg O A:Hoh3453 2.18 Mg O A:Hoh3454 2.18 Mg O A:Hoh3455 2.18 Mg O A:Hoh3456 2.18 Mg O A:Hoh3457 2.18 interactive model: Magnesium binding site 88 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 88 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G561, A: G978, A: A980, A: A981, A: C982, A: Hoh3458, A: Hoh3459, A: Hoh3460, A: Hoh3461, A: Hoh3462, conact list: Atom Atom Distance (A) Mg OP1 A:G561 4.92 Mg OP2 A:G978 4.59 Mg O3' A:A980 4.94 Mg OP1 A:A981 2.62 Mg P A:A981 3.63 Mg OP2 A:A981 4.30 Mg C5' A:A981 3.52 Mg C4' A:A981 4.97 Mg O5' A:A981 3.71 Mg OP2 A:C982 4.45 Mg O A:Hoh3458 2.08 Mg O A:Hoh3459 2.08 Mg O A:Hoh3460 2.08 Mg O A:Hoh3461 2.08 Mg O A:Hoh3462 2.08 interactive model: Magnesium binding site 89 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 89 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G989, A: A990, A: C991, A: G1185, A: G1186, A: Hoh3463, A: Hoh3464, A: Hoh3465, conact list: Atom Atom Distance (A) Mg C3' A:G989 3.86 Mg O3' A:G989 2.71 Mg C2' A:G989 4.39 Mg O2' A:G989 4.10 Mg OP1 A:A990 4.72 Mg C3' A:A990 4.45 Mg P A:A990 3.33 Mg O3' A:A990 4.83 Mg OP2 A:A990 2.83 Mg O5' A:A990 3.83 Mg OP1 A:C991 4.26 Mg P A:C991 4.00 Mg OP2 A:C991 2.88 Mg OP1 A:G1185 4.51 Mg C3' A:G1185 4.95 Mg P A:G1185 4.65 Mg O3' A:G1185 4.86 Mg OP2 A:G1185 4.33 Mg O5' A:G1185 4.55 Mg OP1 A:G1186 3.80 Mg P A:G1186 3.72 Mg OP2 A:G1186 2.73 Mg O5' A:G1186 4.80 Mg O A:Hoh3463 2.17 Mg O A:Hoh3464 2.18 Mg O A:Hoh3465 2.18 interactive model: Magnesium binding site 90 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 90 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1028, A: C1123, A: G1124, A: G1125, A: Hoh3466, A: Hoh3467, A: Hoh3468, A: Hoh3469, A: Hoh3470, conact list: Atom Atom Distance (A) Mg OP2 A:A1028 3.94 Mg N4 A:C1123 4.98 Mg O6 A:G1124 4.73 Mg C6 A:G1125 3.96 Mg N1 A:G1125 4.35 Mg O6 A:G1125 2.89 Mg O A:Hoh3466 2.08 Mg O A:Hoh3467 2.08 Mg O A:Hoh3468 2.08 Mg O A:Hoh3469 2.08 Mg O A:Hoh3470 2.08 interactive model: Magnesium binding site 91 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 91 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1323, A: G1324, A: U1326, A: A1327, A: Hoh3471, A: Hoh3472, A: Hoh3473, A: Hoh3474, A: Hoh3475, conact list: Atom Atom Distance (A) Mg OP2 A:C1323 4.86 Mg C8 A:G1324 5.00 Mg N7 A:G1324 4.56 Mg C3' A:U1326 4.55 Mg O3' A:U1326 4.86 Mg OP2 A:U1326 4.99 Mg O5' A:U1326 5.00 Mg OP1 A:A1327 4.75 Mg P A:A1327 4.05 Mg OP2 A:A1327 2.63 Mg O5' A:A1327 4.89 Mg O A:Hoh3471 2.08 Mg O A:Hoh3472 2.08 Mg O A:Hoh3473 2.08 Mg O A:Hoh3474 2.08 Mg O A:Hoh3475 2.08 interactive model: Magnesium binding site 92 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 92 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1438, A: A1439, A: U1440, A: A1551, A: Hoh3476, A: Hoh3477, A: Hoh3478, A: Hoh3479, conact list: Atom Atom Distance (A) Mg C3' A:U1438 4.62 Mg O3' A:U1438 4.10 Mg C5' A:U1438 4.76 Mg OP1 A:A1439 3.00 Mg P A:A1439 3.08 Mg OP2 A:A1439 2.42 Mg O5' A:A1439 4.32 Mg N3 A:U1440 4.71 Mg C6 A:U1440 4.90 Mg C5 A:U1440 3.58 Mg C4 A:U1440 3.40 Mg O4 A:U1440 2.61 Mg N6 A:A1551 4.39 Mg O A:Hoh3476 2.07 Mg O A:Hoh3477 2.07 Mg O A:Hoh3478 2.07 Mg O A:Hoh3479 2.07 interactive model: Magnesium binding site 93 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 93 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1299, A: G1300, A: U1636, A: A1637, A: Hoh3480, A: Hoh3481, A: Hoh3482, A: Hoh3483, A: Hoh3484, A: Hoh3485, conact list: Atom Atom Distance (A) Mg OP1 A:G1299 3.72 Mg P A:G1299 4.70 Mg C5' A:G1299 4.98 Mg O5' A:G1299 4.64 Mg OP1 A:G1300 4.07 Mg P A:G1300 4.84 Mg O5' A:G1300 4.27 Mg OP1 A:U1636 4.88 Mg P A:U1636 4.26 Mg OP2 A:U1636 3.21 Mg O5' A:U1636 4.25 Mg OP2 A:A1637 4.16 Mg O A:Hoh3480 2.18 Mg O A:Hoh3481 2.18 Mg O A:Hoh3482 2.18 Mg O A:Hoh3483 2.18 Mg O A:Hoh3484 2.18 Mg O A:Hoh3485 2.18 interactive model: Magnesium binding site 94 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 94 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A743, A: U744, A: U1657, A: C1658, A: G1659, D: Asn136, D: Leu138, D: His140, A: Hoh3486, A: Hoh3487, A: Hoh3488, A: Hoh3489, A: Hoh3490, conact list: Atom Atom Distance (A) Mg O3' A:A743 4.34 Mg O2' A:A743 4.66 Mg OP1 A:U744 4.56 Mg O3' A:U1657 4.78 Mg OP1 A:C1658 2.36 Mg P A:C1658 3.49 Mg OP2 A:C1658 3.93 Mg C5' A:C1658 4.27 Mg O5' A:C1658 4.05 Mg OP2 A:G1659 4.32 Mg O D:Asn136 4.48 Mg N D:Leu138 4.92 Mg NE2 D:His140 3.63 Mg CD2 D:His140 4.98 Mg CE1 D:His140 3.74 Mg O A:Hoh3486 2.08 Mg O A:Hoh3487 2.08 Mg O A:Hoh3488 2.07 Mg O A:Hoh3489 2.08 Mg O A:Hoh3490 2.08 interactive model: Magnesium binding site 95 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 95 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2418, A: U2419, 3: Leu28, 3: Arg29, A: Hoh3491, A: Hoh3492, A: Hoh3493, A: Hoh3494, 3: Hoh571, conact list: Atom Atom Distance (A) Mg C8 A:A2418 4.80 Mg C5 A:A2418 4.77 Mg N6 A:A2418 4.49 Mg N7 A:A2418 3.97 Mg OP2 A:A2418 4.83 Mg N3 A:U2419 4.60 Mg C6 A:U2419 4.64 Mg C5 A:U2419 3.33 Mg C4 A:U2419 3.25 Mg O4 A:U2419 2.57 Mg O 3:Leu28 4.88 Mg CD2 3:Leu28 4.91 Mg CB 3:Arg29 4.79 Mg CA 3:Arg29 4.53 Mg O A:Hoh3491 2.08 Mg O A:Hoh3492 2.08 Mg O A:Hoh3493 2.08 Mg O A:Hoh3494 2.08 Mg O 3:Hoh571 2.08 interactive model: Magnesium binding site 96 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 96 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U576, A: G577, A: G2057, A: A2503, A: U2504, A: Hoh3495, A: Hoh3496, A: Hoh3497, A: Hoh3498, conact list: Atom Atom Distance (A) Mg OP1 A:U576 2.96 Mg P A:U576 3.68 Mg OP2 A:U576 3.51 Mg O5' A:U576 4.56 Mg OP2 A:G577 4.39 Mg OP1 A:G2057 4.47 Mg OP1 A:A2503 2.82 Mg P A:A2503 4.17 Mg OP2 A:A2503 4.69 Mg O5' A:A2503 4.97 Mg OP2 A:U2504 4.52 Mg O A:Hoh3495 2.06 Mg O A:Hoh3496 2.07 Mg O A:Hoh3497 2.07 Mg O A:Hoh3498 2.07 interactive model: Magnesium binding site 97 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 97 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2047, A: G2049, A: Hoh3499, A: Hoh3500, A: Hoh3501, A: Hoh3502, A: Hoh3503, A: Hoh3504, conact list: Atom Atom Distance (A) Mg C5 A:C2047 4.71 Mg N4 A:C2047 4.63 Mg O6 A:G2049 4.80 Mg O A:Hoh3499 2.18 Mg O A:Hoh3500 2.17 Mg O A:Hoh3501 2.19 Mg O A:Hoh3502 2.17 Mg O A:Hoh3503 2.18 Mg O A:Hoh3504 2.19 interactive model: Magnesium binding site 98 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 98 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2704, A: A2705, A: A2706, A: U2707, A: Hoh3505, A: Hoh3506, A: Hoh3507, A: Hoh3508, A: Hoh3509, conact list: Atom Atom Distance (A) Mg OP1 A:C2704 3.70 Mg P A:C2704 3.99 Mg OP2 A:C2704 3.64 Mg O5' A:C2704 4.22 Mg N7 A:A2705 4.58 Mg OP2 A:A2705 3.68 Mg C6 A:A2706 4.76 Mg C5 A:A2706 4.81 Mg N6 A:A2706 3.84 Mg N7 A:A2706 4.12 Mg O4 A:U2707 4.81 Mg O A:Hoh3505 2.08 Mg O A:Hoh3506 2.08 Mg O A:Hoh3507 2.08 Mg O A:Hoh3508 2.08 Mg O A:Hoh3509 2.08 interactive model: Magnesium binding site 99 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 99 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2447, A: A2448, A: U2449, A: A2450, A: A2497, A: C2498, A: C2499, A: Hoh3510, A: Hoh3511, A: Hoh3512, conact list: Atom Atom Distance (A) Mg N3 A:G2447 4.56 Mg C3' A:G2447 4.07 Mg C1' A:G2447 4.23 Mg O3' A:G2447 3.14 Mg C2' A:G2447 3.86 Mg C4' A:G2447 4.85 Mg O2' A:G2447 2.81 Mg OP1 A:A2448 4.72 Mg C3' A:A2448 4.71 Mg P A:A2448 3.35 Mg OP2 A:A2448 2.55 Mg C5' A:A2448 3.42 Mg C4' A:A2448 4.25 Mg O5' A:A2448 3.82 Mg C3' A:U2449 4.26 Mg P A:U2449 4.96 Mg O3' A:U2449 4.87 Mg OP2 A:U2449 3.58 Mg C2' A:U2449 4.07 Mg O2' A:U2449 3.67 Mg OP2 A:A2450 4.33 Mg O3' A:A2497 4.85 Mg C2' A:A2497 4.75 Mg O2' A:A2497 3.92 Mg P A:C2498 4.59 Mg OP2 A:C2498 3.46 Mg OP2 A:C2499 4.21 Mg O A:Hoh3510 2.06 Mg O A:Hoh3511 2.07 Mg O A:Hoh3512 2.07 interactive model: Magnesium binding site 100 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 100 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U568, A: U569, A: G570, A: A945, A: A2030, A: G2447, A: A2448, A: C2498, A: C2499, A: Hoh3513, A: Hoh3514, A: Hoh3515, conact list: Atom Atom Distance (A) Mg O2' A:U568 3.77 Mg C5 A:U569 4.12 Mg C4 A:U569 4.61 Mg O4 A:U569 4.27 Mg C6 A:G570 4.39 Mg N7 A:G570 4.94 Mg O6 A:G570 3.27 Mg C2 A:A945 4.70 Mg N1 A:A945 4.47 Mg C6 A:A2030 4.84 Mg N1 A:A2030 4.52 Mg N6 A:A2030 4.82 Mg O3' A:G2447 4.94 Mg OP1 A:A2448 2.71 Mg P A:A2448 3.47 Mg OP2 A:A2448 3.87 Mg C5' A:A2448 5.00 Mg O5' A:A2448 3.61 Mg O3' A:C2498 4.88 Mg OP1 A:C2499 2.96 Mg P A:C2499 4.21 Mg OP2 A:C2499 4.64 Mg O A:Hoh3513 2.18 Mg O A:Hoh3514 2.17 Mg O A:Hoh3515 2.18 interactive model: Magnesium binding site 101 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 101 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1779, A: A1780, A: U1781, A: U1782, A: A1783, A: Hoh3516, A: Hoh3517, A: Hoh3518, conact list: Atom Atom Distance (A) Mg C3' A:U1779 4.68 Mg O3' A:U1779 4.61 Mg C2' A:U1779 4.73 Mg OP1 A:A1780 2.62 Mg P A:A1780 3.63 Mg OP2 A:A1780 4.78 Mg C5' A:A1780 4.85 Mg O5' A:A1780 3.51 Mg C3' A:U1781 4.66 Mg O3' A:U1781 4.96 Mg OP2 A:U1781 4.32 Mg C5' A:U1781 4.84 Mg OP1 A:U1782 2.64 Mg C3' A:U1782 4.79 Mg P A:U1782 4.08 Mg O3' A:U1782 4.91 Mg OP2 A:U1782 4.80 Mg C5' A:U1782 4.93 Mg O5' A:U1782 4.92 Mg OP1 A:A1783 4.61 Mg C8 A:A1783 4.44 Mg P A:A1783 3.97 Mg N7 A:A1783 4.41 Mg OP2 A:A1783 2.56 Mg O5' A:A1783 4.72 Mg O A:Hoh3516 2.18 Mg O A:Hoh3517 2.18 Mg O A:Hoh3518 2.18 interactive model: Magnesium binding site 102 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 102 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G729, A: A730, A: C731, A: A761, A: U762, A: G763, A: Hoh3141, A: Hoh3519, A: Hoh3520, A: Hoh3521, conact list: Atom Atom Distance (A) Mg O3' A:G729 4.85 Mg N9 A:A730 4.75 Mg C3' A:A730 3.79 Mg C8 A:A730 4.52 Mg P A:A730 4.06 Mg N7 A:A730 4.80 Mg O3' A:A730 4.55 Mg OP2 A:A730 2.59 Mg C5' A:A730 4.16 Mg C2' A:A730 4.40 Mg C4' A:A730 4.55 Mg O5' A:A730 4.60 Mg C6 A:C731 4.42 Mg C5 A:C731 3.82 Mg P A:C731 4.10 Mg C4 A:C731 4.81 Mg OP2 A:C731 2.71 Mg O5' A:C731 4.54 Mg N4 A:C731 4.91 Mg OP1 A:A761 3.29 Mg P A:A761 4.28 Mg OP2 A:A761 4.81 Mg C5' A:A761 4.72 Mg O5' A:A761 4.38 Mg OP1 A:U762 3.87 Mg C5' A:U762 4.70 Mg OP1 A:G763 3.95 Mg O A:Hoh3141 4.99 Mg O A:Hoh3519 2.07 Mg O A:Hoh3520 2.07 Mg O A:Hoh3521 2.07 interactive model: Magnesium binding site 103 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 103 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A739, A: C740, A: U741, A: U1782, A: A1783, A: A1784, A: Hoh3516, A: Hoh3518, A: Hoh3522, A: Hoh3523, A: Hoh3524, conact list: Atom Atom Distance (A) Mg C3' A:A739 4.21 Mg O3' A:A739 3.17 Mg OP1 A:C740 4.59 Mg P A:C740 3.50 Mg OP2 A:C740 2.60 Mg O5' A:C740 4.51 Mg OP2 A:U741 4.52 Mg O3' A:U1782 4.51 Mg OP1 A:A1783 2.78 Mg P A:A1783 3.94 Mg OP2 A:A1783 4.41 Mg OP1 A:A1784 4.65 Mg P A:A1784 4.65 Mg OP2 A:A1784 3.69 Mg O A:Hoh3516 4.17 Mg O A:Hoh3518 4.75 Mg O A:Hoh3522 2.17 Mg O A:Hoh3523 2.19 Mg O A:Hoh3524 2.19 interactive model: Magnesium binding site 104 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 104 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A825, A: U826, A: U827, A: U828, A: A2426, A: C2427, A: G2428, A: G2429, A: Hoh3525, A: Hoh3526, conact list: Atom Atom Distance (A) Mg O3' A:A825 4.72 Mg OP1 A:U826 2.64 Mg C3' A:U826 4.76 Mg P A:U826 3.16 Mg O3' A:U826 4.83 Mg OP2 A:U826 3.36 Mg C5' A:U826 3.72 Mg C4' A:U826 4.81 Mg O5' A:U826 3.25 Mg P A:U827 4.50 Mg OP2 A:U827 3.38 Mg C5 A:U828 4.53 Mg C4 A:U828 4.64 Mg O4 A:U828 4.27 Mg O3' A:A2426 4.49 Mg OP1 A:C2427 2.78 Mg P A:C2427 3.42 Mg OP2 A:C2427 3.16 Mg O5' A:C2427 4.63 Mg OP1 A:G2428 3.73 Mg OP1 A:G2429 2.93 Mg P A:G2429 4.37 Mg O A:Hoh3525 2.07 Mg O A:Hoh3526 2.07 interactive model: Magnesium binding site 105 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 105 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G30, A: C31, A: U1199, A: C1200, A: A1214, A: G1239, A: U1240, A: Hoh3527, A: Hoh3528, A: Hoh3529, A: Hoh3530, A: Hoh3531, conact list: Atom Atom Distance (A) Mg O3' A:G30 3.98 Mg OP1 A:C31 2.86 Mg P A:C31 3.99 Mg OP2 A:C31 4.98 Mg OP1 A:U1199 4.44 Mg OP1 A:C1200 4.31 Mg P A:C1200 4.94 Mg OP2 A:C1200 4.96 Mg O2' A:A1214 4.48 Mg OP1 A:G1239 3.86 Mg P A:G1239 4.90 Mg O3' A:G1239 4.13 Mg C5' A:G1239 4.60 Mg O5' A:G1239 4.73 Mg OP1 A:U1240 4.07 Mg P A:U1240 4.47 Mg OP2 A:U1240 4.77 Mg O A:Hoh3527 2.08 Mg O A:Hoh3528 2.08 Mg O A:Hoh3529 2.08 Mg O A:Hoh3530 2.08 Mg O A:Hoh3531 2.08 interactive model: Magnesium binding site 106 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 106 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2581, A: G2582, A: G2583, A: U2584, A: Hoh3532, A: Hoh3533, A: Hoh3534, conact list: Atom Atom Distance (A) Mg C3' A:G2581 4.10 Mg C1' A:G2581 4.95 Mg O3' A:G2581 3.16 Mg C2' A:G2581 3.85 Mg O2' A:G2581 2.64 Mg N9 A:G2582 4.87 Mg C3' A:G2582 4.19 Mg C8 A:G2582 4.96 Mg C5 A:G2582 4.80 Mg P A:G2582 3.82 Mg N7 A:G2582 4.97 Mg O3' A:G2582 4.99 Mg C4 A:G2582 4.74 Mg OP2 A:G2582 3.91 Mg C5' A:G2582 4.45 Mg C2' A:G2582 4.74 Mg C4' A:G2582 4.89 Mg O5' A:G2582 3.47 Mg C8 A:G2583 4.49 Mg P A:G2583 4.46 Mg N7 A:G2583 4.49 Mg OP2 A:G2583 3.16 Mg O5' A:G2583 4.56 Mg C5 A:U2584 4.04 Mg C4 A:U2584 4.15 Mg O4 A:U2584 3.60 Mg O A:Hoh3532 2.18 Mg O A:Hoh3533 2.18 Mg O A:Hoh3534 2.19 interactive model: Magnesium binding site 107 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 107 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1023, A: G1024, A: G1025, A: G1026, A: C1135, A: Hoh3535, A: Hoh3536, conact list: Atom Atom Distance (A) Mg OP1 A:U1023 3.04 Mg P A:U1023 3.61 Mg OP2 A:U1023 3.66 Mg C5' A:U1023 4.83 Mg O5' A:U1023 3.87 Mg P A:G1024 4.66 Mg OP2 A:G1024 3.19 Mg O3' A:G1025 4.97 Mg C2' A:G1025 4.62 Mg O2' A:G1025 4.24 Mg OP1 A:G1026 2.79 Mg P A:G1026 4.22 Mg O5' A:G1026 4.76 Mg OP2 A:C1135 4.14 Mg O A:Hoh3535 2.07 Mg O A:Hoh3536 2.07 interactive model: Magnesium binding site 108 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 108 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2574, A: C2575, A: Hoh3537, A: Hoh3538, A: Hoh3539, conact list: Atom Atom Distance (A) Mg OP1 A:G2574 4.69 Mg N3 A:C2575 4.65 Mg C3' A:C2575 4.41 Mg C2 A:C2575 4.59 Mg C6 A:C2575 2.98 Mg N1 A:C2575 3.80 Mg C5 A:C2575 3.07 Mg C1' A:C2575 4.49 Mg P A:C2575 4.19 Mg O4' A:C2575 4.58 Mg C4 A:C2575 4.00 Mg OP2 A:C2575 3.25 Mg C5' A:C2575 4.84 Mg C2' A:C2575 4.53 Mg C4' A:C2575 4.87 Mg O5' A:C2575 3.70 Mg N4 A:C2575 4.71 Mg O A:Hoh3537 2.07 Mg O A:Hoh3538 2.07 Mg O A:Hoh3539 2.07 interactive model: Magnesium binding site 109 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 109 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1342, A: C1600, A: G1601, A: U1602, T: Thr60, T: Leu61, A: Hoh3540, A: Hoh3541, A: Hoh3542, T: Hoh640, conact list: Atom Atom Distance (A) Mg OP2 A:A1342 4.25 Mg N3 A:C1600 4.87 Mg C6 A:C1600 4.41 Mg C5 A:C1600 3.70 Mg C4 A:C1600 3.99 Mg OP2 A:C1600 4.78 Mg N4 A:C1600 3.97 Mg C8 A:G1601 4.10 Mg C6 A:G1601 4.75 Mg C5 A:G1601 4.34 Mg N7 A:G1601 3.29 Mg OP2 A:G1601 4.39 Mg O6 A:G1601 4.38 Mg N3 A:U1602 4.58 Mg C5 A:U1602 3.81 Mg C4 A:U1602 3.47 Mg O4 A:U1602 2.77 Mg O T:Thr60 4.56 Mg CA T:Leu61 4.98 Mg O A:Hoh3540 2.07 Mg O A:Hoh3541 2.07 Mg O A:Hoh3542 2.07 Mg O T:Hoh640 2.07 interactive model: Magnesium binding site 110 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 110 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A685, A: U686, A: G770, A: G771, 2: Lys11, A: Hoh3543, A: Hoh3544, A: Hoh3545, A: Hoh3546, A: Hoh3547, 2: Hoh647, conact list: Atom Atom Distance (A) Mg O3' A:A685 4.51 Mg P A:U686 4.66 Mg OP2 A:U686 3.54 Mg N7 A:G770 4.49 Mg O6 A:G770 4.98 Mg N7 A:G771 4.91 Mg O6 A:G771 4.86 Mg NZ 2:Lys11 4.08 Mg O A:Hoh3543 2.18 Mg O A:Hoh3544 2.18 Mg O A:Hoh3545 2.18 Mg O A:Hoh3546 2.18 Mg O A:Hoh3547 2.18 Mg O 2:Hoh647 2.18 interactive model: Magnesium binding site 111 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 111 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1669, A: C1670, A: U1671, A: G1673, A: G2549, A: G2550, A: C2551, A: Hoh3284, A: Hoh3548, A: Hoh3549, conact list: Atom Atom Distance (A) Mg P A:A1669 4.85 Mg O3' A:A1669 4.74 Mg OP2 A:A1669 3.51 Mg O5' A:A1669 4.92 Mg OP1 A:C1670 4.16 Mg P A:C1670 3.67 Mg OP2 A:C1670 2.39 Mg O5' A:C1670 4.49 Mg N3 A:U1671 4.61 Mg C6 A:U1671 4.55 Mg C5 A:U1671 3.32 Mg C4 A:U1671 3.33 Mg O4 A:U1671 2.77 Mg OP1 A:G1673 4.48 Mg OP2 A:G1673 4.74 Mg O3' A:G2549 4.43 Mg OP1 A:G2550 2.70 Mg P A:G2550 3.24 Mg OP2 A:G2550 2.91 Mg O5' A:G2550 4.40 Mg OP2 A:C2551 4.08 Mg O A:Hoh3284 3.33 Mg O A:Hoh3548 2.07 Mg O A:Hoh3549 2.07 interactive model: Magnesium binding site 112 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 112 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A861, A: G862, A: A863, A: A910, A: Hoh3550, A: Hoh3551, A: Hoh3552, A: Hoh3553, A: Hoh3554, conact list: Atom Atom Distance (A) Mg OP1 A:A861 4.86 Mg C3' A:A861 4.50 Mg P A:A861 4.74 Mg O3' A:A861 4.85 Mg OP2 A:A861 4.14 Mg O5' A:A861 4.52 Mg C8 A:G862 4.44 Mg P A:G862 3.97 Mg N7 A:G862 4.40 Mg OP2 A:G862 2.63 Mg O5' A:G862 4.13 Mg N6 A:A863 4.45 Mg N7 A:A863 4.37 Mg OP1 A:A910 4.08 Mg P A:A910 4.79 Mg OP2 A:A910 4.53 Mg O A:Hoh3550 2.08 Mg O A:Hoh3551 2.08 Mg O A:Hoh3552 2.08 Mg O A:Hoh3553 2.08 Mg O A:Hoh3554 2.08 interactive model: Magnesium binding site 113 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 113 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1937, A: A1938, A: C1957, A: C1958, A: Hoh3314, A: Hoh3316, A: Hoh3317, A: Hoh3555, A: Hoh3556, A: Hoh3557, A: Hoh3558, A: Hoh3559, conact list: Atom Atom Distance (A) Mg OP1 A:A1937 4.91 Mg C3' A:A1937 3.82 Mg O3' A:A1937 3.61 Mg C5' A:A1937 4.57 Mg C4' A:A1937 4.38 Mg OP1 A:A1938 4.81 Mg P A:A1938 3.47 Mg OP2 A:A1938 2.41 Mg O5' A:A1938 3.94 Mg OP1 A:C1957 4.07 Mg OP1 A:C1958 4.27 Mg P A:C1958 4.96 Mg OP2 A:C1958 4.58 Mg O A:Hoh3314 4.49 Mg O A:Hoh3316 4.81 Mg O A:Hoh3317 4.91 Mg O A:Hoh3555 2.08 Mg O A:Hoh3556 2.08 Mg O A:Hoh3557 2.09 Mg O A:Hoh3558 2.08 Mg O A:Hoh3559 2.08 interactive model: Magnesium binding site 114 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 114 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C192, A: U193, A: C198, A: A199, A: G2242, A: U2243, A: Hoh3560, A: Hoh3561, A: Hoh3562, A: Hoh3563, A: Hoh3581, conact list: Atom Atom Distance (A) Mg OP1 A:C192 3.61 Mg P A:C192 4.54 Mg OP2 A:C192 4.60 Mg OP2 A:U193 4.07 Mg OP1 A:C198 4.11 Mg C3' A:C198 4.69 Mg P A:C198 4.82 Mg O3' A:C198 4.18 Mg C5' A:C198 4.37 Mg O5' A:C198 4.27 Mg OP1 A:A199 3.80 Mg P A:A199 4.49 Mg O3' A:G2242 4.36 Mg OP1 A:U2243 2.60 Mg P A:U2243 3.38 Mg OP2 A:U2243 4.57 Mg C5' A:U2243 4.07 Mg C4' A:U2243 4.75 Mg O5' A:U2243 3.02 Mg O A:Hoh3560 2.07 Mg O A:Hoh3561 2.07 Mg O A:Hoh3562 2.07 Mg O A:Hoh3563 2.07 Mg O A:Hoh3581 4.81 interactive model: Magnesium binding site 115 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 115 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1788, A: U1827, A: G1828, A: G1972, C: Arg220, A: Mg2960, A: Hoh3304, A: Hoh3564, A: Hoh3565, A: Hoh3566, A: Hoh3567, A: Hoh3568, C: Hoh338, conact list: Atom Atom Distance (A) Mg OP2 A:C1788 4.97 Mg OP1 A:U1827 4.50 Mg C3' A:U1827 4.24 Mg P A:U1827 4.89 Mg O3' A:U1827 3.89 Mg OP2 A:U1827 4.40 Mg OP1 A:G1828 3.52 Mg C8 A:G1828 4.42 Mg P A:G1828 3.34 Mg N7 A:G1828 4.62 Mg OP2 A:G1828 2.60 Mg O5' A:G1828 4.80 Mg OP2 A:G1972 4.16 Mg CZ C:Arg220 4.90 Mg NH2 C:Arg220 4.64 Mg NH1 C:Arg220 4.46 Mg MG A:Mg2960 4.93 Mg O A:Hoh3304 4.68 Mg O A:Hoh3564 2.09 Mg O A:Hoh3565 2.08 Mg O A:Hoh3566 2.09 Mg O A:Hoh3567 2.08 Mg O A:Hoh3568 2.09 Mg O C:Hoh338 4.75 interactive model: Magnesium binding site 116 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 116 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1264, A: A1265, A: A2614, A: U2615, A: Hoh3231, A: Hoh3569, A: Hoh3570, A: Hoh3571, A: Hoh3572, conact list: Atom Atom Distance (A) Mg O3' A:A1264 4.22 Mg OP1 A:A1265 3.70 Mg P A:A1265 3.41 Mg OP2 A:A1265 2.38 Mg C5' A:A1265 4.89 Mg O5' A:A1265 4.67 Mg C3' A:A2614 4.78 Mg O3' A:A2614 4.56 Mg C5' A:A2614 4.98 Mg OP1 A:U2615 3.14 Mg P A:U2615 3.42 Mg OP2 A:U2615 2.83 Mg C5' A:U2615 4.65 Mg O5' A:U2615 4.58 Mg O A:Hoh3231 3.99 Mg O A:Hoh3569 2.08 Mg O A:Hoh3570 2.07 Mg O A:Hoh3571 2.07 Mg O A:Hoh3572 2.07 interactive model: Magnesium binding site 117 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 117 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1378, A: U1379, A: G1380, A: Hoh3573, A: Hoh3574, A: Hoh3575, conact list: Atom Atom Distance (A) Mg C3' A:A1378 3.68 Mg C1' A:A1378 4.75 Mg O3' A:A1378 4.03 Mg C2' A:A1378 3.42 Mg O2' A:A1378 3.90 Mg OP1 A:U1379 4.99 Mg C3' A:U1379 4.40 Mg P A:U1379 3.58 Mg O3' A:U1379 4.63 Mg OP2 A:U1379 2.79 Mg C5' A:U1379 4.35 Mg O5' A:U1379 3.28 Mg N9 A:G1380 4.40 Mg OP1 A:G1380 4.96 Mg C8 A:G1380 3.20 Mg C6 A:G1380 4.56 Mg C5 A:G1380 3.83 Mg P A:G1380 3.84 Mg N7 A:G1380 2.72 Mg C4 A:G1380 4.72 Mg OP2 A:G1380 2.47 Mg O5' A:G1380 4.07 Mg O6 A:G1380 4.54 Mg O A:Hoh3573 2.07 Mg O A:Hoh3574 2.07 Mg O A:Hoh3575 2.07 interactive model: Magnesium binding site 118 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 118 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C786, A: C787, A: U790, A: C791, A: Hoh3576, A: Hoh3577, A: Hoh3578, A: Hoh3579, conact list: Atom Atom Distance (A) Mg OP1 A:C786 3.59 Mg P A:C786 4.66 Mg O3' A:C786 4.90 Mg C5' A:C786 4.61 Mg O5' A:C786 4.60 Mg OP1 A:C787 4.60 Mg P A:C787 4.85 Mg OP2 A:C787 4.59 Mg OP1 A:U790 3.53 Mg C3' A:U790 4.60 Mg P A:U790 3.60 Mg OP2 A:U790 3.31 Mg C5' A:U790 4.90 Mg C2' A:U790 4.97 Mg O5' A:U790 3.60 Mg OP2 A:C791 3.70 Mg O A:Hoh3576 2.06 Mg O A:Hoh3577 2.07 Mg O A:Hoh3578 2.07 Mg O A:Hoh3579 2.07 interactive model: Magnesium binding site 119 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 119 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G194, A: A195, A: A196, A: A197, A: C198, A: Hoh3563, A: Hoh3580, A: Hoh3581, A: Hoh3582, conact list: Atom Atom Distance (A) Mg N9 A:G194 4.99 Mg C3' A:G194 4.95 Mg C8 A:G194 4.23 Mg C5 A:G194 4.94 Mg P A:G194 4.69 Mg N7 A:G194 4.19 Mg OP2 A:G194 3.66 Mg O5' A:G194 4.30 Mg N9 A:A195 4.87 Mg C8 A:A195 3.73 Mg C6 A:A195 3.80 Mg C5 A:A195 3.52 Mg N6 A:A195 3.25 Mg N7 A:A195 2.67 Mg C4 A:A195 4.78 Mg OP2 A:A195 3.98 Mg O3' A:A196 4.65 Mg OP1 A:A197 2.42 Mg P A:A197 3.88 Mg OP2 A:A197 4.69 Mg C5' A:A197 4.99 Mg O5' A:A197 4.70 Mg OP1 A:C198 4.40 Mg C5 A:C198 4.88 Mg P A:C198 3.97 Mg OP2 A:C198 2.67 Mg O5' A:C198 4.79 Mg O A:Hoh3563 4.83 Mg O A:Hoh3580 2.07 Mg O A:Hoh3581 2.07 Mg O A:Hoh3582 2.07 interactive model: Magnesium binding site 120 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 120 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1313, A: C1314, A: C1315, A: G1331, A: G1332, A: Hoh3583, A: Hoh3584, A: Hoh3585, conact list: Atom Atom Distance (A) Mg O3' A:U1313 4.59 Mg OP1 A:C1314 2.35 Mg C3' A:C1314 3.83 Mg P A:C1314 3.35 Mg O3' A:C1314 3.86 Mg OP2 A:C1314 4.23 Mg C5' A:C1314 3.37 Mg C4' A:C1314 4.02 Mg O5' A:C1314 3.34 Mg OP1 A:C1315 4.80 Mg P A:C1315 3.73 Mg OP2 A:C1315 2.56 Mg O5' A:C1315 4.69 Mg O3' A:G1331 4.81 Mg OP1 A:G1332 2.61 Mg P A:G1332 4.03 Mg C5' A:G1332 4.64 Mg O5' A:G1332 4.55 Mg O A:Hoh3583 2.19 Mg O A:Hoh3584 2.19 Mg O A:Hoh3585 2.18 interactive model: Magnesium binding site 121 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 121 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1675, A: A1676, A: A1677, A: Hoh3586, A: Hoh3587, A: Hoh3588, A: Hoh3589, A: Hoh3590, conact list: Atom Atom Distance (A) Mg C3' A:C1675 4.96 Mg O3' A:C1675 4.95 Mg OP2 A:C1675 4.23 Mg OP1 A:A1676 4.85 Mg C8 A:A1676 4.15 Mg P A:A1676 3.89 Mg N7 A:A1676 4.03 Mg OP2 A:A1676 2.64 Mg O5' A:A1676 3.93 Mg C8 A:A1677 4.57 Mg C5 A:A1677 4.88 Mg N6 A:A1677 4.76 Mg N7 A:A1677 3.80 Mg OP2 A:A1677 4.39 Mg O A:Hoh3586 2.09 Mg O A:Hoh3587 2.08 Mg O A:Hoh3588 2.07 Mg O A:Hoh3589 2.08 Mg O A:Hoh3590 2.08 interactive model: Magnesium binding site 122 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 122 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G27, A: C509, A: C510, A: U511, A: G512, A: Hoh3591, A: Hoh3592, A: Hoh3593, conact list: Atom Atom Distance (A) Mg O6 A:G27 4.62 Mg O3' A:C509 4.17 Mg OP1 A:C510 2.77 Mg P A:C510 3.99 Mg OP2 A:C510 4.91 Mg OP1 A:U511 4.94 Mg P A:U511 4.28 Mg OP2 A:U511 2.85 Mg C8 A:G512 3.77 Mg C5 A:G512 4.58 Mg N7 A:G512 3.30 Mg O A:Hoh3591 2.07 Mg O A:Hoh3592 2.07 Mg O A:Hoh3593 2.07 interactive model: Magnesium binding site 123 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 123 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U568, A: U569, A: G570, A: A820, A: A821, A: A972, A: A973, A: Hoh3102, A: Hoh3594, A: Hoh3595, A: Hoh3596, A: Hoh3597, A: Hoh3598, A: Hoh3599, conact list: Atom Atom Distance (A) Mg C6 A:U568 4.53 Mg C5 A:U568 4.06 Mg C4 A:U568 4.87 Mg OP2 A:U569 4.54 Mg OP1 A:G570 3.39 Mg P A:G570 4.61 Mg OP2 A:G570 4.92 Mg C6 A:A820 4.96 Mg N1 A:A820 4.47 Mg N6 A:A820 4.42 Mg C2 A:A821 4.91 Mg N1 A:A821 4.73 Mg O2' A:A972 4.59 Mg OP1 A:A973 4.89 Mg P A:A973 4.94 Mg OP2 A:A973 4.18 Mg O A:Hoh3102 4.40 Mg O A:Hoh3594 2.18 Mg O A:Hoh3595 2.17 Mg O A:Hoh3596 2.20 Mg O A:Hoh3597 2.17 Mg O A:Hoh3598 2.18 Mg O A:Hoh3599 2.17 interactive model: Magnesium binding site 124 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 124 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1188, A: A1189, A: G1190, L: Gly26, A: Hoh3600, A: Hoh3601, A: Hoh3602, A: Hoh3603, conact list: Atom Atom Distance (A) Mg OP1 A:U1188 3.96 Mg P A:U1188 4.38 Mg OP2 A:U1188 3.96 Mg O5' A:U1188 4.87 Mg P A:A1189 4.90 Mg OP2 A:A1189 3.46 Mg N7 A:G1190 4.45 Mg O6 A:G1190 4.31 Mg O L:Gly26 4.97 Mg CA L:Gly26 4.82 Mg O A:Hoh3600 2.07 Mg O A:Hoh3601 2.07 Mg O A:Hoh3602 2.07 Mg O A:Hoh3603 2.07 interactive model: Magnesium binding site 125 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 125 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C1006, A: C1007, A: A1008, A: A1009, A: A1010, A: Hoh3604, A: Hoh3605, A: Hoh3606, conact list: Atom Atom Distance (A) Mg OP1 A:C1006 3.55 Mg P A:C1006 4.52 Mg OP2 A:C1006 4.55 Mg P A:C1007 4.79 Mg OP2 A:C1007 3.61 Mg C3' A:A1008 4.45 Mg O3' A:A1008 3.21 Mg C2' A:A1008 4.72 Mg O2' A:A1008 3.95 Mg OP1 A:A1009 4.86 Mg C3' A:A1009 3.91 Mg P A:A1009 3.40 Mg O3' A:A1009 4.51 Mg OP2 A:A1009 2.74 Mg C5' A:A1009 4.63 Mg C2' A:A1009 4.49 Mg C4' A:A1009 4.87 Mg O5' A:A1009 3.52 Mg OP1 A:A1010 4.97 Mg C8 A:A1010 4.75 Mg P A:A1010 3.99 Mg N7 A:A1010 4.53 Mg OP2 A:A1010 2.56 Mg O5' A:A1010 4.77 Mg O A:Hoh3604 2.18 Mg O A:Hoh3605 2.18 Mg O A:Hoh3606 2.18 interactive model: Magnesium binding site 126 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 126 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1823, A: G1824, C: Arg51, C: His52, C: Thr218, A: Hoh3607, A: Hoh3608, A: Hoh3609, A: Hoh3610, conact list: Atom Atom Distance (A) Mg OP1 A:G1823 4.14 Mg C3' A:G1823 4.65 Mg P A:G1823 4.57 Mg O3' A:G1823 4.39 Mg OP2 A:G1823 4.82 Mg C5' A:G1823 4.24 Mg O5' A:G1823 4.18 Mg OP1 A:G1824 3.22 Mg P A:G1824 3.47 Mg OP2 A:G1824 2.86 Mg O5' A:G1824 4.80 Mg O C:Arg51 4.75 Mg NE2 C:His52 4.32 Mg CB C:His52 3.66 Mg ND1 C:His52 2.57 Mg CD2 C:His52 4.34 Mg CE1 C:His52 3.37 Mg CG C:His52 3.34 Mg OG1 C:Thr218 4.96 Mg O A:Hoh3607 2.07 Mg O A:Hoh3608 2.07 Mg O A:Hoh3609 2.07 Mg O A:Hoh3610 2.07 interactive model: Magnesium binding site 127 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 127 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A1791, A: G1792, A: C1793, A: G1826, A: Hoh3611, A: Hoh3612, A: Hoh3613, A: Hoh3614, A: Hoh3615, A: Hoh3616, conact list: Atom Atom Distance (A) Mg OP2 A:A1791 4.03 Mg O6 A:G1792 4.47 Mg N4 A:C1793 3.92 Mg O6 A:G1826 4.79 Mg O A:Hoh3611 2.18 Mg O A:Hoh3612 2.18 Mg O A:Hoh3613 2.18 Mg O A:Hoh3614 2.19 Mg O A:Hoh3615 2.19 Mg O A:Hoh3616 2.18 interactive model: Magnesium binding site 128 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 128 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C2591, A: G2592, A: U2593, A: C2594, A: A2600, C: Glu235, C: Gly236, C: Asn238, A: Hoh3617, A: Hoh3618, A: Hoh3619, A: Hoh3620, C: Hoh735, C: Hoh739, conact list: Atom Atom Distance (A) Mg C5 A:C2591 4.66 Mg OP2 A:C2591 4.85 Mg C8 A:G2592 4.49 Mg C6 A:G2592 4.52 Mg C5 A:G2592 4.35 Mg N7 A:G2592 3.56 Mg OP2 A:G2592 4.76 Mg O6 A:G2592 4.03 Mg N3 A:U2593 4.94 Mg C5 A:U2593 4.06 Mg C4 A:U2593 3.69 Mg O4 A:U2593 2.73 Mg N4 A:C2594 4.29 Mg N6 A:A2600 4.01 Mg O C:Glu235 4.21 Mg O C:Gly236 4.38 Mg CA C:Gly236 4.87 Mg ND2 C:Asn238 4.52 Mg OD1 C:Asn238 3.88 Mg CG C:Asn238 4.51 Mg O A:Hoh3617 2.08 Mg O A:Hoh3618 2.08 Mg O A:Hoh3619 2.08 Mg O A:Hoh3620 4.65 Mg O C:Hoh735 2.08 Mg O C:Hoh739 2.08 interactive model: Magnesium binding site 129 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 129 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1903, A: U1971, A: C2594, A: G2595, A: G2597, C: Asn238, C: Phe239, A: Hoh3620, A: Hoh3621, A: Hoh3622, A: Hoh3623, A: Hoh3624, C: Hoh743, conact list: Atom Atom Distance (A) Mg OP1 A:G1903 4.76 Mg O2 A:U1971 4.76 Mg N4 A:C2594 4.91 Mg C6 A:G2595 4.39 Mg C5 A:G2595 4.88 Mg N7 A:G2595 4.77 Mg O6 A:G2595 3.60 Mg OP1 A:G2597 4.02 Mg P A:G2597 4.96 Mg OP2 A:G2597 4.88 Mg ND2 C:Asn238 4.64 Mg OD1 C:Asn238 4.12 Mg CG C:Asn238 4.46 Mg O C:Phe239 4.75 Mg O A:Hoh3620 2.18 Mg O A:Hoh3621 2.18 Mg O A:Hoh3622 2.18 Mg O A:Hoh3623 2.19 Mg O A:Hoh3624 2.19 Mg O C:Hoh743 2.21 interactive model: Magnesium binding site 130 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 130 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: A2741, A: G2742, A: C2755, 4: Asp20, 4: Arg24, A: Hoh3625, A: Hoh3626, A: Hoh3627, A: Hoh3628, 4: Hoh755, 4: Hoh760, conact list: Atom Atom Distance (A) Mg OP2 A:A2741 4.48 Mg N7 A:G2742 4.60 Mg O6 A:G2742 4.82 Mg O2 A:C2755 4.46 Mg OD2 4:Asp20 3.88 Mg NH1 4:Arg24 4.47 Mg O A:Hoh3625 2.18 Mg O A:Hoh3626 2.18 Mg O A:Hoh3627 2.18 Mg O A:Hoh3628 2.18 Mg O 4:Hoh755 2.18 Mg O 4:Hoh760 2.18 interactive model: Magnesium binding site 131 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 131 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U832, A: G942, A: A943, L: Arg33, L: His35, L: Lys36, A: Hoh3629, A: Hoh3630, A: Hoh3631, A: Hoh3632, L: Hoh763, conact list: Atom Atom Distance (A) Mg OP1 A:U832 5.00 Mg OP2 A:U832 4.32 Mg O3' A:G942 4.66 Mg OP1 A:A943 3.74 Mg C8 A:A943 5.00 Mg P A:A943 3.38 Mg OP2 A:A943 2.30 Mg O5' A:A943 4.05 Mg O L:Arg33 4.45 Mg O L:His35 4.52 Mg O L:Lys36 4.99 Mg O A:Hoh3629 2.08 Mg O A:Hoh3630 2.08 Mg O A:Hoh3631 2.08 Mg O A:Hoh3632 2.08 Mg O L:Hoh763 2.08 interactive model: Magnesium binding site 132 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 132 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2004, N: Asn11, A: Hoh3633, A: Hoh3634, A: Hoh3635, A: Hoh3636, A: Hoh3637, A: Hoh3638, conact list: Atom Atom Distance (A) Mg OP1 A:G2004 3.86 Mg P A:G2004 4.36 Mg OP2 A:G2004 3.84 Mg ND2 N:Asn11 4.99 Mg O A:Hoh3633 2.18 Mg O A:Hoh3634 2.18 Mg O A:Hoh3635 2.19 Mg O A:Hoh3636 2.18 Mg O A:Hoh3637 2.18 Mg O A:Hoh3638 2.18 interactive model: Magnesium binding site 133 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 133 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2819, A: A2820, A: A2837, A: G2838, A: C2874, N: Arg2, N: Lys5, N: Ser6, A: Hoh3639, A: Hoh3640, A: Hoh3641, A: Hoh3642, A: Hoh3643, N: Hoh780, conact list: Atom Atom Distance (A) Mg OP1 A:G2819 3.73 Mg OP1 A:A2820 4.75 Mg O3' A:A2837 4.79 Mg OP1 A:G2838 3.39 Mg P A:G2838 4.48 Mg OP1 A:C2874 4.27 Mg P A:C2874 4.90 Mg OP2 A:C2874 5.00 Mg NH1 N:Arg2 4.89 Mg O N:Lys5 4.01 Mg OG N:Ser6 4.67 Mg O A:Hoh3639 2.18 Mg O A:Hoh3640 2.18 Mg O A:Hoh3641 2.18 Mg O A:Hoh3642 2.18 Mg O A:Hoh3643 2.18 Mg O N:Hoh780 2.18 interactive model: Magnesium binding site 134 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 134 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: U80, B: C93, B: A94, B: U95, B: G96, V: Lys14, V: Arg18, B: Hoh591, B: Hoh592, B: Hoh593, B: Hoh595, V: Hoh594, conact list: Atom Atom Distance (A) Mg C4 B:U80 4.97 Mg O4 B:U80 3.98 Mg C5 B:C93 4.79 Mg N4 B:C93 4.89 Mg N6 B:A94 4.60 Mg N7 B:A94 4.84 Mg N3 B:U95 4.98 Mg C5 B:U95 4.65 Mg C4 B:U95 3.93 Mg O4 B:U95 2.76 Mg O6 B:G96 4.81 Mg CD V:Lys14 4.45 Mg NH1 V:Arg18 4.73 Mg O B:Hoh591 2.08 Mg O B:Hoh592 2.08 Mg O B:Hoh593 2.08 Mg O B:Hoh595 2.08 Mg O V:Hoh594 2.08 interactive model: Magnesium binding site 135 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 135 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G784, A: G2588, A: A2589, A: G2599, C: Asn225, C: Glu235, A: Hoh3160, A: Hoh3163, A: Hoh3164, A: Hoh3419, C: Hoh273, C: Hoh274, conact list: Atom Atom Distance (A) Mg OP1 A:G784 3.58 Mg P A:G784 4.54 Mg OP2 A:G784 4.60 Mg C5' A:G784 4.85 Mg OP1 A:G2588 3.89 Mg OP1 A:A2589 3.62 Mg P A:A2589 4.51 Mg OP2 A:A2589 4.42 Mg OP1 A:G2599 4.02 Mg ND2 C:Asn225 3.33 Mg OD1 C:Asn225 4.97 Mg CG C:Asn225 4.54 Mg OE2 C:Glu235 4.98 Mg O A:Hoh3160 3.94 Mg O A:Hoh3163 2.07 Mg O A:Hoh3164 2.07 Mg O A:Hoh3419 4.99 Mg O C:Hoh273 2.07 Mg O C:Hoh274 2.07 interactive model: Magnesium binding site 136 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 136 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G1256, E: Gly66, A: Hoh3109, A: Hoh3110, A: Hoh3111, A: Hoh3112, A: Hoh3113, A: Hoh3114, conact list: Atom Atom Distance (A) Mg OP1 A:G1256 4.91 Mg C E:Gly66 4.93 Mg CA E:Gly66 4.63 Mg O A:Hoh3109 2.20 Mg O A:Hoh3110 2.18 Mg O A:Hoh3111 2.19 Mg O A:Hoh3112 2.19 Mg O A:Hoh3113 2.18 Mg O A:Hoh3114 2.19 interactive model: Magnesium binding site 137 out of 137 in 3ofd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 137 of Magnesium in the PDB 3ofd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Asn67, J: Asp71, J: Hoh748, J: Hoh749, J: Hoh750, J: Hoh751, J: Hoh752, J: Hoh753, conact list: Atom Atom Distance (A) Mg ND2 J:Asn67 4.72 Mg OD1 J:Asn67 4.03 Mg CG J:Asn67 4.69 Mg OD2 J:Asp71 4.96 Mg OD1 J:Asp71 4.22 Mg CG J:Asp71 4.98 Mg O J:Hoh748 2.18 Mg O J:Hoh749 2.18 Mg O J:Hoh750 2.18 Mg O J:Hoh751 2.18 Mg O J:Hoh752 2.18 Mg O J:Hoh753 2.18 interactive model: