Magnesium in PDB 4kyu: Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis

The structure of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis, PDB code: 4kyu was solved by V.Singh, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.27 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.260, 43.750, 50.710, 66.88, 79.88, 70.82
R / Rfree (%)	15.8 / 20.1

The structure of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis also contains other interesting chemical elements:

Potassium	(K)	3 atoms
Sodium	(Na)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis (pdb code 4kyu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis, PDB code: 4kyu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg204 b:35.9 occ:1.00 OG A:SER17 2.7 8.2 0.5 O A:HOH445 2.9 45.9 1.0 O A:HOH321 3.0 19.9 1.0 O A:HOH376 3.2 36.7 1.0 CB A:SER17 3.6 11.3 1.0 ND2 A:ASN21 3.6 17.5 1.0 C A:SER17 3.8 7.8 1.0 OG1 A:THR18 3.8 9.0 1.0 N A:THR18 3.8 7.4 1.0 CB A:ARG39 4.0 27.7 1.0 O A:SER17 4.0 7.7 1.0 CA A:THR18 4.0 7.8 1.0 O A:ARG39 4.3 25.5 1.0 CA A:SER17 4.3 8.8 1.0 O A:HOH408 4.4 44.9 1.0 O A:HOH358 4.4 19.6 1.0 O2A A:GDP201 4.4 10.2 1.0 CB A:THR18 4.5 7.2 1.0 O1A A:GDP201 4.6 11.2 1.0 CG A:ASN21 4.8 15.0 1.0 C A:ARG39 4.8 25.9 1.0 O B:HOH303 4.9 42.7 1.0 CA A:ARG39 4.9 25.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg203 b:15.9 occ:0.40 O B:HOH389 1.8 14.1 1.0 O1B B:GDP201 1.9 10.6 1.0 OG B:SER17 2.0 11.3 0.5 O B:HOH385 2.1 20.6 1.0 O B:HOH387 2.3 25.5 1.0 PB B:GDP201 3.1 7.9 1.0 CB B:SER17 3.2 9.7 0.5 CB B:SER17 3.2 10.7 0.5 O B:HOH386 3.3 22.6 1.0 O3B B:GDP201 3.4 8.2 1.0 N B:SER17 3.7 9.4 1.0 OD2 B:ASP57 3.7 16.2 1.0 CA B:SER17 3.9 10.5 0.5 CA B:SER17 4.0 9.9 0.5 O2B B:GDP201 4.1 8.0 1.0 O2A B:GDP201 4.1 11.7 1.0 O3A B:GDP201 4.2 10.0 1.0 OG B:SER17 4.3 14.7 0.5 PA B:GDP201 4.6 9.8 1.0 CG B:ASP57 4.7 11.7 1.0 O B:HOH348 4.7 34.0 1.0 O B:HOH312 4.8 14.4 1.0 O1A B:GDP201 4.8 10.5 1.0 C B:LYS16 4.8 9.8 1.0 CB B:LYS16 4.8 8.7 1.0 NZ B:LYS16 4.9 7.9 1.0 O B:GLY59 4.9 14.9 1.0 C B:GLY59 4.9 13.5 1.0

V.Singh, B.Prakash. Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis To Be Published.