Magnesium in PDB 4zi2: Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21

The structure of Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21, PDB code: 4zi2 was solved by M.Lokaj, C.Koerner, S.Koesling, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.73 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	69.700, 98.600, 102.430, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 26.6

The binding sites of Magnesium atom in the Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21 (pdb code 4zi2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21, PDB code: 4zi2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:19.6 occ:1.00 O A:HOH432 2.0 18.7 1.0 O3G A:GNP301 2.0 18.3 1.0 O A:HOH436 2.0 13.5 1.0 OG1 A:THR48 2.1 21.3 1.0 OG1 A:THR31 2.1 19.4 1.0 O2B A:GNP301 2.1 16.4 1.0 PG A:GNP301 3.1 20.8 1.0 CB A:THR48 3.1 18.4 1.0 CB A:THR31 3.2 19.5 1.0 PB A:GNP301 3.3 20.4 1.0 N3B A:GNP301 3.4 20.8 1.0 N A:THR48 3.6 20.7 1.0 O1G A:GNP301 3.7 22.6 1.0 CA A:THR48 4.0 17.4 1.0 N A:THR31 4.0 18.9 1.0 O2A A:GNP301 4.0 21.8 1.0 OD2 A:ASP67 4.2 23.6 1.0 CA A:THR31 4.2 19.1 1.0 OD1 A:ASP67 4.3 25.2 1.0 CG2 A:THR48 4.3 14.0 1.0 CG2 A:THR31 4.3 18.8 1.0 O2G A:GNP301 4.3 18.0 1.0 O3A A:GNP301 4.3 19.9 1.0 O1B A:GNP301 4.3 17.1 1.0 O A:THR46 4.4 24.2 1.0 O C:HOH222 4.5 19.1 1.0 PA A:GNP301 4.5 21.3 1.0 C A:PRO47 4.6 22.2 1.0 CG A:ASP67 4.7 21.8 1.0 O1A A:GNP301 4.7 19.0 1.0 CA A:PRO47 4.8 18.7 1.0

Magnesium binding site 2 out of 2 in the Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bart-Like Domain of BARTL1/CCDC104 in Complex with ARL3FL Bound to Gppnhp in P21 21 21 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:32.6 occ:1.00 OG1 B:THR31 2.0 35.0 1.0 O3G B:GNP301 2.1 34.8 1.0 OG1 B:THR48 2.1 30.0 1.0 O1B B:GNP301 2.1 31.1 1.0 O B:HOH428 2.1 36.2 1.0 O B:HOH417 2.1 26.6 1.0 CB B:THR31 3.0 32.4 1.0 PG B:GNP301 3.2 30.9 1.0 CB B:THR48 3.2 30.3 1.0 PB B:GNP301 3.3 31.2 1.0 N3B B:GNP301 3.4 33.0 1.0 N B:THR48 3.6 30.0 1.0 O2G B:GNP301 3.8 34.6 1.0 N B:THR31 3.9 37.7 1.0 CA B:THR31 4.0 37.6 1.0 CA B:THR48 4.1 29.5 1.0 CG2 B:THR31 4.1 33.4 1.0 OD2 B:ASP67 4.1 36.4 1.0 O1A B:GNP301 4.1 32.3 1.0 O B:THR46 4.2 31.0 1.0 OD1 B:ASP67 4.2 32.6 1.0 O3A B:GNP301 4.3 31.2 1.0 O2B B:GNP301 4.3 31.6 1.0 O1G B:GNP301 4.3 27.9 1.0 CG2 B:THR48 4.4 26.5 1.0 O D:HOH205 4.4 30.0 1.0 PA B:GNP301 4.5 36.2 1.0 C B:PRO47 4.6 30.5 1.0 CG B:ASP67 4.6 36.7 1.0 O2A B:GNP301 4.6 33.9 1.0 CA B:PRO47 4.8 30.6 1.0 ND2 B:ASN52 4.9 31.1 1.0 C B:LYS30 5.0 36.5 1.0

M.Lokaj, S.K.Kosling, C.Koerner, S.M.Lange, S.E.Van Beersum, J.Van Reeuwijk, R.Roepman, N.Horn, M.Ueffing, K.Boldt, A.Wittinghofer. The Interaction of CCDC104/BARTL1 with ARL3 and Implications For Ciliary Function. Structure V. 23 2122 2015.
ISSN: ISSN 0969-2126
PubMed: 26455799
DOI: 10.1016/J.STR.2015.08.016