Magnesium in PDB 5lmn: Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 127;

Binding sites:

The binding sites of Magnesium atom in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) (pdb code 5lmn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 127 binding sites of Magnesium where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A), PDB code: 5lmn:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:0.2 occ:1.00 OP1 A:A1502 3.8 26.0 1.0 O2' A:G1530 3.8 74.4 1.0 OP2 A:G1530 4.0 67.1 1.0 O2' A:G1392 4.0 34.6 1.0 O3' A:G1392 4.0 34.6 1.0 C4' A:G1392 4.1 39.0 1.0 O3' A:G1530 4.3 0.1 1.0 OP2 A:A1503 4.4 38.4 1.0 C3' A:G1392 4.6 36.1 1.0 C5' A:G1392 4.8 43.6 1.0 C4' A:G1530 4.8 78.8 1.0 C2' A:G1392 4.8 35.1 1.0 P A:G1530 4.9 66.6 1.0 OP1 A:A1503 4.9 37.6 1.0 C2' A:G1530 4.9 77.3 1.0 C3' A:G1530 4.9 83.6 1.0 O4' A:G1392 5.0 37.4 1.0 P A:A1502 5.0 24.9 1.0 OP1 A:G1530 5.0 66.0 1.0

Magnesium binding site 2 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:24.2 occ:1.00 OP2 A:C267 2.5 57.8 1.0 OP2 A:U252 2.5 66.9 1.0 NZ Q:LYS67 2.8 30.1 1.0 O2' A:G266 2.8 46.6 1.0 O3' A:G251 3.3 68.3 1.0 P A:U252 3.5 67.5 1.0 OP2 A:C268 3.5 60.9 1.0 CE Q:LYS67 3.8 29.7 1.0 P A:C267 3.9 57.2 1.0 CD Q:LYS67 4.1 28.3 1.0 OP1 A:C268 4.2 60.0 1.0 C2' A:G266 4.2 48.5 1.0 OP2 A:U253 4.2 44.4 1.0 O2' A:G251 4.2 66.0 1.0 P A:C268 4.3 60.1 1.0 O5' A:U252 4.3 63.3 1.0 C3' A:G251 4.6 67.0 1.0 O3' A:G266 4.6 53.3 1.0 OP1 A:U252 4.7 65.0 1.0 OP1 A:C267 4.7 57.7 1.0 C3' A:G266 4.8 49.8 1.0 O5' A:C267 4.9 54.8 1.0 O3' A:C267 4.9 56.4 1.0 C2' A:G251 4.9 63.5 1.0

Magnesium binding site 3 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:3.2 occ:1.00 OP1 A:A315 2.5 31.7 1.0 P A:A315 3.5 31.6 1.0 OP2 A:A315 3.8 32.6 1.0 C5' A:A315 4.0 29.0 1.0 N7 A:G318 4.0 45.7 1.0 O5' A:A315 4.1 30.2 1.0 OP2 A:G317 4.4 46.0 1.0 C8 A:G318 4.5 46.4 1.0 OP2 A:G318 4.6 64.4 1.0 N7 A:G319 4.8 37.4 1.0 O3' A:C314 4.9 26.8 1.0 C4' A:A315 5.0 26.6 1.0

Magnesium binding site 4 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:66.2 occ:1.00 OP2 A:A172 3.4 82.1 1.0 N7 A:G148 3.4 91.9 1.0 O6 A:G148 3.9 87.5 1.0 C5 A:G148 4.2 88.2 1.0 C6 A:G148 4.4 86.2 1.0 C8 A:G148 4.4 93.8 1.0 P A:A172 4.4 82.9 1.0 OP1 A:A172 4.5 82.0 1.0 OP1 A:A171 4.9 0.1 1.0

Magnesium binding site 5 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:49.0 occ:1.00 O4 A:U1512 3.1 25.0 1.0 O4 A:U1510 3.2 31.4 1.0 O4 A:U1522 3.5 33.7 1.0 O6 A:G1511 3.6 23.8 1.0 C4 A:U1510 4.0 32.0 1.0 N6 A:A1513 4.0 30.8 1.0 C4 A:U1522 4.2 32.6 1.0 C4 A:U1512 4.3 24.7 1.0 O6 A:G1523 4.3 33.3 1.0 N4 A:C1524 4.4 25.6 1.0 C5 A:U1522 4.5 32.0 1.0 C5 A:U1510 4.6 33.0 1.0 C6 A:G1511 4.6 22.3 1.0 N3 A:U1510 4.8 32.6 1.0 N3 A:U1512 4.9 24.5 1.0 C6 A:A1513 5.0 30.2 1.0

Magnesium binding site 6 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:25.9 occ:1.00 OP1 A:C980 2.1 56.2 1.0 O6 A:G1220 3.4 58.7 1.0 P A:C980 3.5 54.6 1.0 C5' A:C980 3.9 55.8 1.0 O5' A:C980 4.0 54.1 1.0 O3' A:C979 4.1 50.9 1.0 O6 A:G1221 4.2 57.0 1.0 C6 A:G1220 4.3 57.3 1.0 C5 A:U1219 4.3 75.0 1.0 O4 A:U1219 4.4 77.5 1.0 N7 A:G1220 4.5 57.9 1.0 C4 A:U1219 4.6 76.4 1.0 OP2 A:U981 4.6 66.6 1.0 OP2 A:C980 4.6 53.6 1.0 N4 A:C984 4.6 54.2 1.0 C5 A:G1220 4.7 58.0 1.0 O2' A:U982 4.8 59.6 1.0 N7 A:G1221 4.9 54.2 1.0 N4 A:C985 4.9 58.0 1.0

Magnesium binding site 7 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:43.0 occ:1.00 OP1 A:U13 2.4 29.0 1.0 OP1 A:G527 2.8 44.4 1.0 OP1 A:A914 3.2 32.8 1.0 O3' A:U12 3.4 28.2 1.0 OP2 A:A914 3.4 32.2 1.0 OP2 A:U14 3.4 32.3 1.0 P A:U13 3.5 28.7 1.0 P A:G527 3.6 43.2 1.0 P A:A914 3.7 32.7 1.0 OP2 A:G527 3.8 43.6 1.0 O3' A:C526 4.0 38.8 1.0 O5' A:A914 4.2 31.4 1.0 O5' A:U13 4.5 27.6 1.0 C4' A:U13 4.6 26.3 1.0 P A:U14 4.6 32.8 1.0 OP2 A:U13 4.7 28.4 1.0 C3' A:U12 4.7 27.4 1.0 O2' A:U12 4.9 26.5 1.0 MG A:MG1666 5.0 16.5 1.0 O3' A:U13 5.0 30.1 1.0

Magnesium binding site 8 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:34.6 occ:1.00 OP2 A:G107 2.7 35.8 1.0 N7 A:A325 3.6 32.2 1.0 P A:G107 3.7 35.9 1.0 O3' A:G324 3.7 33.5 1.0 O2' A:G324 3.8 29.2 1.0 O6 A:G326 3.9 30.2 1.0 C8 A:A325 3.9 33.2 1.0 OP1 A:G107 4.0 37.4 1.0 OP1 A:A325 4.0 37.8 1.0 OP1 A:C106 4.0 47.6 1.0 O5' A:C106 4.1 43.4 1.0 O3' A:C106 4.2 36.0 1.0 P A:C106 4.4 46.6 1.0 C5' A:C106 4.5 40.5 1.0 C4' A:G324 4.5 28.5 1.0 C3' A:G324 4.5 29.6 1.0 P A:A325 4.5 37.0 1.0 OP2 A:C106 4.7 46.7 1.0 C3' A:C106 4.7 36.9 1.0 C2' A:G324 4.8 28.1 1.0 C6 A:G326 4.9 29.4 1.0 C5 A:A325 5.0 31.7 1.0 O2' A:A134 5.0 56.8 1.0

Magnesium binding site 9 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:0.7 occ:1.00 OP1 A:U793 2.9 78.7 1.0 P A:U793 3.8 78.7 1.0 OP2 A:U793 3.8 77.3 1.0 N7 A:G786 4.2 63.9 1.0 O6 A:G786 4.3 61.8 1.0 O6 A:G785 4.3 68.0 1.0 MG A:MG1610 4.4 55.9 1.0 N7 A:G785 4.5 65.3 1.0 O3' A:A792 4.6 73.1 1.0 C6 A:G785 4.8 67.8 1.0 N6 A:A787 4.8 63.2 1.0 C5 A:G785 4.9 65.9 1.0 C5 A:G786 5.0 62.2 1.0 C6 A:G786 5.0 61.8 1.0

Magnesium binding site 10 out of 127 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:55.9 occ:1.00 N7 A:A787 3.5 59.9 1.0 OP2 A:G786 3.8 79.7 1.0 O4 A:U788 3.9 79.7 1.0 C8 A:A787 4.2 60.5 1.0 MG A:MG1609 4.4 0.7 1.0 N7 A:G786 4.5 63.9 1.0 C5 A:A787 4.6 61.2 1.0 C4 A:U788 4.8 77.4 1.0 N6 A:A787 4.8 63.2 1.0 C8 A:G786 4.9 66.9 1.0 O3' A:A792 4.9 73.1 1.0 P A:G786 5.0 79.3 1.0

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074