Magnesium in PDB 5mlv: S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State

The binding sites of Magnesium atom in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State (pdb code 5mlv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State, PDB code: 5mlv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg501 b:0.7 occ:1.00 O2B G:ANP502 2.1 0.7 1.0 OG1 G:THR199 2.1 0.5 1.0 O2G G:ANP502 2.2 0.7 1.0 N G:THR199 2.2 0.5 1.0 CG G:LYS198 2.7 0.1 1.0 C G:LYS198 2.8 0.1 1.0 CB G:THR199 2.9 0.5 1.0 PG G:ANP502 2.9 0.7 1.0 CA G:THR199 2.9 0.5 1.0 O3G G:ANP502 3.1 0.7 1.0 PB G:ANP502 3.2 0.7 1.0 N3B G:ANP502 3.3 0.7 1.0 O G:LYS198 3.4 0.1 1.0 CA G:LYS198 3.5 0.1 1.0 OD1 G:ASP360 3.6 0.2 1.0 CB G:LYS198 3.6 0.1 1.0 N G:LYS198 3.7 0.1 1.0 O G:LEU361 3.8 0.9 1.0 CD G:LYS198 3.9 0.1 1.0 CE G:LYS198 4.0 0.1 1.0 O1B G:ANP502 4.0 0.7 1.0 NZ G:LYS198 4.2 0.1 1.0 OD2 G:ASP360 4.2 0.2 1.0 CG2 G:THR199 4.3 0.5 1.0 CG G:ASP360 4.3 0.2 1.0 O3A G:ANP502 4.4 0.7 1.0 C G:THR199 4.4 0.5 1.0 O1G G:ANP502 4.4 0.7 1.0 O2A G:ANP502 4.6 0.7 1.0 C G:GLY197 4.7 0.9 1.0 N G:TYR200 4.8 0.5 1.0 C G:LEU361 5.0 0.9 1.0

Magnesium binding site 2 out of 6 in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg501 b:0.7 occ:1.00 O2B O:ANP502 2.1 0.6 1.0 OG1 O:THR199 2.1 0.9 1.0 O2G O:ANP502 2.1 0.6 1.0 N O:THR199 2.2 0.9 1.0 CG O:LYS198 2.7 0.4 1.0 C O:LYS198 2.8 0.4 1.0 PG O:ANP502 2.9 0.6 1.0 CB O:THR199 2.9 0.9 1.0 CA O:THR199 3.0 0.9 1.0 O3G O:ANP502 3.0 0.6 1.0 PB O:ANP502 3.2 0.6 1.0 N3B O:ANP502 3.3 0.6 1.0 O O:LYS198 3.5 0.4 1.0 CA O:LYS198 3.5 0.4 1.0 CB O:LYS198 3.6 0.4 1.0 OD1 O:ASP360 3.7 0.8 1.0 N O:LYS198 3.7 0.4 1.0 O O:LEU361 3.9 0.7 1.0 CD O:LYS198 3.9 0.4 1.0 O1B O:ANP502 3.9 0.6 1.0 CE O:LYS198 4.0 0.4 1.0 NZ O:LYS198 4.1 0.4 1.0 OD2 O:ASP360 4.3 0.8 1.0 CG2 O:THR199 4.3 0.9 1.0 O3A O:ANP502 4.3 0.6 1.0 O1G O:ANP502 4.3 0.6 1.0 C O:THR199 4.4 0.9 1.0 CG O:ASP360 4.4 0.8 1.0 C O:GLY197 4.7 1.0 1.0 O2A O:ANP502 4.7 0.6 1.0 N O:TYR200 4.8 0.6 1.0

Magnesium binding site 3 out of 6 in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:0.2 occ:1.00 O2B A:ANP502 2.1 0.1 1.0 OG1 A:THR199 2.1 0.3 1.0 O2G A:ANP502 2.1 0.1 1.0 N A:THR199 2.2 0.3 1.0 CG A:LYS198 2.8 0.6 1.0 C A:LYS198 2.8 0.6 1.0 PG A:ANP502 2.9 0.1 1.0 CB A:THR199 2.9 0.3 1.0 CA A:THR199 2.9 0.3 1.0 O3G A:ANP502 3.0 0.1 1.0 PB A:ANP502 3.2 0.1 1.0 N3B A:ANP502 3.3 0.1 1.0 O A:LYS198 3.4 0.6 1.0 CA A:LYS198 3.5 0.6 1.0 OD1 A:ASP360 3.6 0.1 1.0 CB A:LYS198 3.6 0.6 1.0 N A:LYS198 3.7 0.6 1.0 O A:LEU361 3.8 0.3 1.0 CD A:LYS198 3.9 0.6 1.0 O1B A:ANP502 4.0 0.1 1.0 CE A:LYS198 4.0 0.6 1.0 NZ A:LYS198 4.2 0.6 1.0 OD2 A:ASP360 4.2 0.1 1.0 CG2 A:THR199 4.3 0.3 1.0 CG A:ASP360 4.3 0.1 1.0 C A:THR199 4.4 0.3 1.0 O3A A:ANP502 4.4 0.1 1.0 O1G A:ANP502 4.4 0.1 1.0 O2A A:ANP502 4.6 0.1 1.0 C A:GLY197 4.7 0.9 1.0 N A:TYR200 4.8 0.5 1.0

Magnesium binding site 4 out of 6 in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg501 b:0.8 occ:1.00 O2B D:ANP502 2.1 0.6 1.0 OG1 D:THR199 2.1 0.6 1.0 O2G D:ANP502 2.2 0.6 1.0 N D:THR199 2.2 0.6 1.0 CG D:LYS198 2.7 0.2 1.0 C D:LYS198 2.8 0.2 1.0 PG D:ANP502 2.9 0.6 1.0 CB D:THR199 2.9 0.6 1.0 CA D:THR199 3.0 0.6 1.0 O3G D:ANP502 3.1 0.6 1.0 PB D:ANP502 3.2 0.6 1.0 N3B D:ANP502 3.3 0.6 1.0 O D:LYS198 3.5 0.2 1.0 CA D:LYS198 3.5 0.2 1.0 CB D:LYS198 3.6 0.2 1.0 OD1 D:ASP360 3.6 0.5 1.0 N D:LYS198 3.7 0.2 1.0 O D:LEU361 3.8 0.5 1.0 CD D:LYS198 3.9 0.2 1.0 O1B D:ANP502 4.0 0.6 1.0 CE D:LYS198 4.0 0.2 1.0 NZ D:LYS198 4.1 0.2 1.0 OD2 D:ASP360 4.2 0.5 1.0 CG2 D:THR199 4.3 0.6 1.0 CG D:ASP360 4.3 0.5 1.0 O3A D:ANP502 4.4 0.6 1.0 O1G D:ANP502 4.4 0.6 1.0 C D:THR199 4.4 0.6 1.0 O2A D:ANP502 4.6 0.6 1.0 C D:GLY197 4.7 0.9 1.0 N D:TYR200 4.8 0.5 1.0

Magnesium binding site 5 out of 6 in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg501 b:0.0 occ:1.00 O2B J:ANP502 2.1 0.1 1.0 OG1 J:THR199 2.1 0.4 1.0 O2G J:ANP502 2.1 0.1 1.0 N J:THR199 2.2 0.4 1.0 CG J:LYS198 2.7 0.2 1.0 C J:LYS198 2.8 0.2 1.0 PG J:ANP502 2.9 0.1 1.0 CB J:THR199 2.9 0.4 1.0 CA J:THR199 2.9 0.4 1.0 O3G J:ANP502 3.1 0.1 1.0 PB J:ANP502 3.2 0.1 1.0 N3B J:ANP502 3.3 0.1 1.0 O J:LYS198 3.4 0.2 1.0 CA J:LYS198 3.5 0.2 1.0 OD1 J:ASP360 3.6 0.6 1.0 CB J:LYS198 3.6 0.2 1.0 N J:LYS198 3.7 0.2 1.0 O J:LEU361 3.8 0.2 1.0 CD J:LYS198 3.9 0.2 1.0 O1B J:ANP502 4.0 0.1 1.0 CE J:LYS198 4.0 0.2 1.0 NZ J:LYS198 4.2 0.2 1.0 OD2 J:ASP360 4.2 0.6 1.0 CG2 J:THR199 4.3 0.4 1.0 CG J:ASP360 4.3 0.6 1.0 O3A J:ANP502 4.3 0.1 1.0 C J:THR199 4.4 0.4 1.0 O1G J:ANP502 4.4 0.1 1.0 O2A J:ANP502 4.7 0.1 1.0 C J:GLY197 4.7 0.3 1.0 N J:TYR200 4.8 0.7 1.0

Magnesium binding site 6 out of 6 in the S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of S. Pombe Microtubule Decorated with CUT7 Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg501 b:0.5 occ:1.00 O2B P:ANP502 2.1 1.0 1.0 OG1 P:THR199 2.1 0.9 1.0 O2G P:ANP502 2.2 1.0 1.0 N P:THR199 2.2 0.9 1.0 CG P:LYS198 2.7 0.7 1.0 C P:LYS198 2.8 0.7 1.0 PG P:ANP502 2.9 1.0 1.0 CB P:THR199 2.9 0.9 1.0 CA P:THR199 2.9 0.9 1.0 O3G P:ANP502 3.1 1.0 1.0 PB P:ANP502 3.2 1.0 1.0 N3B P:ANP502 3.3 1.0 1.0 O P:LYS198 3.4 0.7 1.0 CA P:LYS198 3.5 0.7 1.0 OD1 P:ASP360 3.6 0.6 1.0 CB P:LYS198 3.6 0.7 1.0 N P:LYS198 3.7 0.7 1.0 O P:LEU361 3.8 0.1 1.0 CD P:LYS198 3.9 0.7 1.0 CE P:LYS198 4.0 0.7 1.0 O1B P:ANP502 4.0 1.0 1.0 NZ P:LYS198 4.2 0.7 1.0 OD2 P:ASP360 4.2 0.6 1.0 CG2 P:THR199 4.3 0.9 1.0 CG P:ASP360 4.3 0.6 1.0 O3A P:ANP502 4.4 1.0 1.0 C P:THR199 4.4 0.9 1.0 O1G P:ANP502 4.4 1.0 1.0 O2A P:ANP502 4.7 1.0 1.0 C P:GLY197 4.7 0.0 1.0 N P:TYR200 4.8 0.6 1.0 C P:LEU361 5.0 0.1 1.0

O.Von Loeffelholz, A.Pena, D.R.Drummond, R.Cross, C.A.Moores. Cryo-Em Structure (4.5- Angstrom ) of Yeast Kinesin-5-Microtubule Complex Reveals A Distinct Binding Footprint and Mechanism of Drug Resistance. J. Mol. Biol. V. 431 864 2019.
ISSN: ESSN 1089-8638
PubMed: 30659798
DOI: 10.1016/J.JMB.2019.01.011