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Magnesium in PDB 6ll0: Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase

Protein crystallography data

The structure of Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase, PDB code: 6ll0 was solved by Y.X.Wang, C.Suzuki-Minakuchi, H.Nojiri, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.44 / 2.20
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 92.087, 92.087, 243.504, 90, 90, 120
R / Rfree (%) 17.6 / 24.6

Other elements in 6ll0:

The structure of Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase also contains other interesting chemical elements:

Iron (Fe) 9 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase (pdb code 6ll0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase, PDB code: 6ll0:

Magnesium binding site 1 out of 1 in 6ll0

Go back to Magnesium Binding Sites List in 6ll0
Magnesium binding site 1 out of 1 in the Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg403

b:34.1
occ:1.00
O B:HOH558 1.9 24.8 1.0
O B:HOH569 1.9 20.7 1.0
O B:TYR253 2.0 28.1 1.0
O B:HOH520 2.1 20.2 1.0
O B:HOH587 2.2 32.8 1.0
OD1 B:ASP197 2.3 25.9 1.0
C B:TYR253 3.2 29.8 1.0
CG B:ASP197 3.5 24.8 1.0
O B:HOH602 3.9 30.0 1.0
CA B:GLY254 4.0 32.3 1.0
N B:GLY254 4.0 30.5 1.0
N B:TYR253 4.1 27.3 1.0
CA B:ASP197 4.2 24.6 1.0
CA B:TYR253 4.2 30.0 1.0
CB B:ASP197 4.4 24.4 1.0
OD2 B:ASP197 4.4 22.3 1.0
O B:HOH604 4.4 36.6 1.0
O B:VAL193 4.5 24.9 1.0
O B:LEU198 4.5 24.7 1.0
C B:ALA252 4.5 25.8 1.0
O1 B:EDO409 4.5 48.8 1.0
C B:ASP197 4.6 24.1 1.0
CB B:TYR253 4.8 33.9 1.0
O B:LYS194 4.8 29.4 1.0
CB B:ALA252 4.8 24.2 1.0
CA B:ALA252 4.9 25.5 1.0

Reference:

Y.X.Wang, C.Suzuki-Minakuchi, H.Nojiri. Carbazole-Soaked Reduced Oxygenase in Carbazole 1,9A-Dioxygenase To Be Published.
Page generated: Tue Oct 1 10:29:58 2024

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