Magnesium in PDB 6mlq: Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State

The binding sites of Magnesium atom in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State (pdb code 6mlq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State, PDB code: 6mlq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:0.2 occ:1.00 O3A A:GTP502 2.0 0.4 1.0 O1G A:GTP502 2.0 0.4 1.0 O1A A:GTP502 2.1 0.4 1.0 N A:GLN11 2.1 0.7 1.0 CB A:GLN11 2.4 0.7 1.0 PA A:GTP502 2.5 0.4 1.0 CA A:GLN11 2.8 0.7 1.0 PG A:GTP502 3.0 0.4 1.0 PB A:GTP502 3.1 0.4 1.0 C A:GLY10 3.3 0.6 1.0 O3B A:GTP502 3.3 0.4 1.0 O3G A:GTP502 3.4 0.4 1.0 O5' A:GTP502 3.4 0.4 1.0 O1B A:GTP502 3.4 0.4 1.0 N A:ALA12 3.6 0.3 1.0 CA A:GLY10 3.7 0.6 1.0 C A:GLN11 3.7 0.7 1.0 O2A A:GTP502 3.7 0.4 1.0 CG A:GLN11 3.9 0.7 1.0 OE1 A:GLN11 4.0 0.7 1.0 O A:GLY10 4.3 0.6 1.0 O2G A:GTP502 4.4 0.4 1.0 O2B A:GTP502 4.4 0.4 1.0 CD A:GLN11 4.4 0.7 1.0 C5' A:GTP502 4.5 0.4 1.0 OD1 A:ASP69 4.6 0.4 1.0 O A:GLN11 4.9 0.7 1.0 CA A:ALA12 4.9 0.3 1.0 N A:GLY10 5.0 0.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:1.0 occ:1.00 O1A C:ADP401 2.2 0.7 1.0 O1B C:ADP401 2.2 0.7 1.0 O3B C:ADP401 2.3 0.7 1.0 PB C:ADP401 2.5 0.7 1.0 O3A C:ADP401 2.9 0.7 1.0 PA C:ADP401 3.0 0.7 1.0 OG1 C:THR101 3.5 0.7 1.0 O2A C:ADP401 3.9 0.7 1.0 O2B C:ADP401 4.0 0.7 1.0 CB C:THR101 4.2 0.7 1.0 O5' C:ADP401 4.3 0.7 1.0 N C:GLY97 4.4 0.6 1.0 N C:THR101 4.8 0.7 1.0 C5' C:ADP401 4.8 0.7 1.0 CB C:SER215 4.8 0.4 1.0 CA C:GLY97 4.9 0.6 1.0

S.Jiang, N.Mani, E.M.Wilson-Kubalek, P.I.Ku, R.A.Milligan, R.Subramanian. Interplay Between the Kinesin and Tubulin Mechanochemical Cycles Underlies Microtubule Tip Tracking By the Non-Motile Ciliary Kinesin KIF7. Dev.Cell V. 49 711 2019.
ISSN: ISSN 1534-5807
PubMed: 31031197
DOI: 10.1016/J.DEVCEL.2019.04.001