Magnesium in PDB 6mlq: Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State (pdb code 6mlq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State, PDB code: 6mlq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6mlq

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Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:0.2
occ:1.00
O3A A:GTP502 2.0 0.4 1.0
O1G A:GTP502 2.0 0.4 1.0
O1A A:GTP502 2.1 0.4 1.0
N A:GLN11 2.1 0.7 1.0
CB A:GLN11 2.4 0.7 1.0
PA A:GTP502 2.5 0.4 1.0
CA A:GLN11 2.8 0.7 1.0
PG A:GTP502 3.0 0.4 1.0
PB A:GTP502 3.1 0.4 1.0
C A:GLY10 3.3 0.6 1.0
O3B A:GTP502 3.3 0.4 1.0
O3G A:GTP502 3.4 0.4 1.0
O5' A:GTP502 3.4 0.4 1.0
O1B A:GTP502 3.4 0.4 1.0
N A:ALA12 3.6 0.3 1.0
CA A:GLY10 3.7 0.6 1.0
C A:GLN11 3.7 0.7 1.0
O2A A:GTP502 3.7 0.4 1.0
CG A:GLN11 3.9 0.7 1.0
OE1 A:GLN11 4.0 0.7 1.0
O A:GLY10 4.3 0.6 1.0
O2G A:GTP502 4.4 0.4 1.0
O2B A:GTP502 4.4 0.4 1.0
CD A:GLN11 4.4 0.7 1.0
C5' A:GTP502 4.5 0.4 1.0
OD1 A:ASP69 4.6 0.4 1.0
O A:GLN11 4.9 0.7 1.0
CA A:ALA12 4.9 0.3 1.0
N A:GLY10 5.0 0.6 1.0

Magnesium binding site 2 out of 2 in 6mlq

Go back to Magnesium Binding Sites List in 6mlq
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Microtubule-Bound KIF7 in the Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:1.0
occ:1.00
O1A C:ADP401 2.2 0.7 1.0
O1B C:ADP401 2.2 0.7 1.0
O3B C:ADP401 2.3 0.7 1.0
PB C:ADP401 2.5 0.7 1.0
O3A C:ADP401 2.9 0.7 1.0
PA C:ADP401 3.0 0.7 1.0
OG1 C:THR101 3.5 0.7 1.0
O2A C:ADP401 3.9 0.7 1.0
O2B C:ADP401 4.0 0.7 1.0
CB C:THR101 4.2 0.7 1.0
O5' C:ADP401 4.3 0.7 1.0
N C:GLY97 4.4 0.6 1.0
N C:THR101 4.8 0.7 1.0
C5' C:ADP401 4.8 0.7 1.0
CB C:SER215 4.8 0.4 1.0
CA C:GLY97 4.9 0.6 1.0

Reference:

S.Jiang, N.Mani, E.M.Wilson-Kubalek, P.I.Ku, R.A.Milligan, R.Subramanian. Interplay Between the Kinesin and Tubulin Mechanochemical Cycles Underlies Microtubule Tip Tracking By the Non-Motile Ciliary Kinesin KIF7. Dev.Cell V. 49 711 2019.
ISSN: ISSN 1534-5807
PubMed: 31031197
DOI: 10.1016/J.DEVCEL.2019.04.001
Page generated: Mon Dec 14 23:37:23 2020

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