Magnesium in PDB 6p7n: Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex) (pdb code 6p7n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex), PDB code: 6p7n:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6p7n

Go back to Magnesium Binding Sites List in 6p7n
Magnesium binding site 1 out of 4 in the Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:0.0
occ:1.00
OP2 B:A17 2.2 0.2 1.0
O A:THR716 2.3 0.2 1.0
C A:THR716 3.5 0.2 1.0
P B:A17 3.6 0.2 1.0
O5' B:A17 4.0 0.2 1.0
N A:THR716 4.1 0.2 1.0
OP2 B:U16 4.3 0.2 1.0
CA A:THR716 4.3 0.2 1.0
OP2 B:G18 4.4 0.2 1.0
N A:PRO717 4.5 0.2 1.0
OD1 A:ASP708 4.5 0.2 1.0
C3' B:U16 4.5 0.2 1.0
C A:PRO717 4.5 0.2 1.0
CA A:PRO717 4.5 0.2 1.0
O3' B:U16 4.5 0.2 1.0
OP1 B:A17 4.6 0.2 1.0
OP1 B:U16 4.7 0.2 1.0
O5' B:U16 4.7 0.2 1.0
P B:U16 4.7 0.2 1.0
CB A:THR716 4.7 0.2 1.0
C A:GLY715 4.8 0.2 1.0
C8 B:A17 4.8 0.2 1.0
N A:ASN718 4.8 0.2 1.0
O A:PRO717 4.8 0.2 1.0
N7 B:A17 4.8 0.2 1.0

Magnesium binding site 2 out of 4 in 6p7n

Go back to Magnesium Binding Sites List in 6p7n
Magnesium binding site 2 out of 4 in the Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1301

b:0.2
occ:1.00
OP2 F:A17 2.2 0.5 1.0
O E:THR716 2.3 0.1 1.0
C E:THR716 3.5 0.1 1.0
P F:A17 3.6 0.5 1.0
O5' F:A17 4.0 0.5 1.0
N E:THR716 4.1 0.1 1.0
OP2 F:U16 4.3 0.9 1.0
CA E:THR716 4.3 0.1 1.0
OP2 F:G18 4.4 0.8 1.0
N E:PRO717 4.5 0.9 1.0
OD1 E:ASP708 4.5 0.3 1.0
C E:PRO717 4.5 0.9 1.0
C3' F:U16 4.5 0.9 1.0
CA E:PRO717 4.5 0.9 1.0
O3' F:U16 4.6 0.9 1.0
OP1 F:A17 4.6 0.5 1.0
OP1 F:U16 4.7 0.9 1.0
O5' F:U16 4.7 0.9 1.0
P F:U16 4.7 0.9 1.0
CB E:THR716 4.7 0.1 1.0
C8 F:A17 4.8 0.5 1.0
C E:GLY715 4.8 0.2 1.0
N E:ASN718 4.8 0.8 1.0
O E:PRO717 4.8 0.9 1.0
N7 F:A17 4.8 0.5 1.0

Magnesium binding site 3 out of 4 in 6p7n

Go back to Magnesium Binding Sites List in 6p7n
Magnesium binding site 3 out of 4 in the Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:0.0
occ:1.00
OP2 B:A8 3.6 0.2 1.0
O4 B:U3 3.9 0.2 1.0
OP2 B:U7 4.3 0.2 1.0
N7 B:A8 4.6 0.2 1.0
C5 B:C9 4.7 0.2 1.0
OP2 B:A2 4.7 0.2 1.0
C4 B:U3 5.0 0.2 1.0
O5' B:U7 5.0 0.2 1.0

Magnesium binding site 4 out of 4 in 6p7n

Go back to Magnesium Binding Sites List in 6p7n
Magnesium binding site 4 out of 4 in the Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of LBCAS12A-Crrna: ACRVA4 (2:2 Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg101

b:0.7
occ:1.01
OP2 F:A8 3.6 0.3 1.0
O4 F:U3 3.9 0.5 1.0
OP2 F:U7 4.3 0.3 1.0
N7 F:A8 4.6 0.3 1.0
C5 F:C9 4.7 0.6 1.0
OP2 F:A2 4.7 0.2 1.0
C4 F:U3 5.0 0.5 1.0

Reference:

G.J.Knott, B.F.Cress, J.J.Liu, B.W.Thornton, R.J.Lew, B.Al-Shayeb, D.J.Rosenberg, M.Hammel, B.A.Adler, M.J.Lobba, M.Xu, A.P.Arkin, C.Fellmann, J.A.Doudna. Structural Basis For ACRVA4 Inhibition of Specific Crispr-CAS12A. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 31397669
DOI: 10.7554/ELIFE.49110
Page generated: Mon Dec 14 23:46:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy