Magnesium in PDB 6v32: Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib

Enzymatic activity of Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib

All present enzymatic activity of Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib:
2.7.11.1; 2.7.12.2;

Protein crystallography data

The structure of Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib, PDB code: 6v32 was solved by K.Li, G.Gonzalez Del-Pino, E.Park, M.J.Eck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.44 / 3.19
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.964, 116.964, 129.733, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 23

Other elements in 6v32:

The structure of Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib also contains other interesting chemical elements:

Fluorine (F) 1 atom
Bromine (Br) 1 atom
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib (pdb code 6v32). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib, PDB code: 6v32:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6v32

Go back to Magnesium Binding Sites List in 6v32
Magnesium binding site 1 out of 2 in the Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg403

b:0.3
occ:1.00
OD2 B:ASP208 2.1 0.7 1.0
OD1 B:ASN195 2.1 0.7 1.0
O1B B:ANP402 2.2 0.5 0.9
O2A B:ANP402 2.3 0.1 0.9
CG B:ASP208 3.0 0.9 1.0
CG B:ASN195 3.3 93.2 1.0
O2 B:3EW401 3.5 0.4 0.8
CB B:ASP208 3.6 0.8 1.0
PB B:ANP402 3.6 0.2 0.9
O1G B:ANP402 3.7 0.9 0.9
PA B:ANP402 3.7 0.6 0.9
ND2 B:ASN195 3.8 0.6 1.0
OD1 B:ASP208 4.0 0.5 1.0
O B:SER194 4.0 87.7 1.0
NZ B:LYS97 4.0 0.3 1.0
O3A B:ANP402 4.1 0.3 0.9
C15 B:3EW401 4.3 0.9 0.8
CE B:LYS192 4.4 0.8 1.0
N2 B:3EW401 4.4 0.9 0.8
O2B B:ANP402 4.5 0.1 0.9
CB B:ASN195 4.5 80.4 1.0
C B:SER194 4.5 63.0 1.0
O1A B:ANP402 4.5 0.9 0.9
C16 B:3EW401 4.6 0.1 0.8
PG B:ANP402 4.6 0.4 0.9
N3B B:ANP402 4.6 0.1 0.9
OG B:SER194 4.6 92.1 1.0
CA B:ASN195 4.7 83.3 1.0
O5' B:ANP402 4.8 0.6 0.9
N B:ASN195 4.8 72.3 1.0
OD2 B:ASP190 4.9 0.3 1.0
CB B:SER194 4.9 86.8 1.0
O3G B:ANP402 4.9 0.3 0.9

Magnesium binding site 2 out of 2 in 6v32

Go back to Magnesium Binding Sites List in 6v32
Magnesium binding site 2 out of 2 in the Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:86.6
occ:1.00
O1B A:ANP801 2.2 71.5 1.0
OD1 A:ASN581 2.4 64.5 1.0
OD2 A:ASP594 2.4 82.5 1.0
O1A A:ANP801 2.7 93.5 1.0
O2G A:ANP801 3.1 90.7 1.0
O A:ASN580 3.5 71.6 1.0
CG A:ASN581 3.5 75.8 1.0
C8 A:ANP801 3.6 96.6 1.0
CG A:ASP594 3.6 82.4 1.0
PB A:ANP801 3.7 87.2 1.0
PA A:ANP801 3.7 93.2 1.0
O5' A:ANP801 3.9 89.3 1.0
CA A:ASN581 4.0 71.2 1.0
N7 A:ANP801 4.0 93.3 1.0
C A:ASN580 4.1 70.3 1.0
O3A A:ANP801 4.2 93.4 1.0
CB A:ASN581 4.3 65.0 1.0
N A:ASN581 4.4 69.9 1.0
CE1 A:PHE583 4.4 83.3 1.0
CZ A:PHE583 4.4 85.7 1.0
OD1 A:ASP594 4.5 90.5 1.0
PG A:ANP801 4.5 84.8 1.0
CB A:ASP594 4.5 79.6 1.0
C2' A:ANP801 4.5 91.8 1.0
O2B A:ANP801 4.5 71.8 1.0
N9 A:ANP801 4.6 95.1 1.0
ND2 A:ASN581 4.6 79.6 1.0
N3B A:ANP801 4.7 84.9 1.0
NZ A:LYS483 5.0 96.1 1.0

Reference:

K.Li, G.Gonzalez Del-Pino, E.Park, M.J.Eck. Crystal Structure of the Braf:MEK1 Kinases in Complex with Amppnp and Selumetinib To Be Published.
Page generated: Tue Dec 15 01:07:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy