Magnesium in PDB 6zu9: Structure of A Yeast ABCE1-Bound 48S Initiation Complex

The structure of Structure of A Yeast ABCE1-Bound 48S Initiation Complex also contains other interesting chemical elements:

Zinc	(Zn)	3 atoms
Iron	(Fe)	8 atoms

The binding sites of Magnesium atom in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex (pdb code 6zu9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex, PDB code: 6zu9:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1901 b:0.2 occ:1.00 O S:ARG30 2.1 0.1 1.0 OP1 2:C449 2.1 0.7 1.0 C S:ARG30 3.2 0.1 1.0 P 2:C449 3.4 0.7 1.0 CB S:ARG30 3.5 0.1 1.0 CA S:ARG30 3.7 0.1 1.0 O5' 2:C449 3.7 0.7 1.0 N S:ARG30 3.8 0.1 1.0 C5' 2:C449 3.9 0.7 1.0 CB S:THR81 4.0 0.5 1.0 N S:PRO31 4.3 0.0 1.0 OP2 2:C449 4.3 0.7 1.0 N S:SER32 4.5 0.8 1.0 C S:PRO31 4.5 0.0 1.0 O S:LYS7 4.5 0.2 1.0 OP2 2:U450 4.5 0.7 1.0 O3' 2:C448 4.6 0.4 1.0 CA S:PRO31 4.7 0.0 1.0 C S:PRO29 4.7 0.7 1.0 O S:PRO31 4.8 0.0 1.0 O3' 2:C449 4.8 0.7 1.0 OP1 2:U450 4.9 0.7 1.0 P 2:U450 5.0 0.7 1.0 C4' 2:C449 5.0 0.7 1.0

Magnesium binding site 2 out of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1902 b:0.4 occ:1.00 OP1 2:U1473 2.2 1.0 1.0 O C:LYS188 2.5 1.0 1.0 C3' 2:C1472 2.6 0.2 1.0 P 2:U1473 2.7 1.0 1.0 O3' 2:C1472 2.8 0.2 1.0 O2' 2:C1472 3.0 0.2 1.0 C2' 2:C1472 3.1 0.2 1.0 OP2 2:U1473 3.2 1.0 1.0 C C:LYS188 3.2 1.0 1.0 O C:ASN186 3.3 0.8 1.0 CA C:THR189 3.4 0.7 1.0 O C:ALA183 3.5 0.0 1.0 N C:THR189 3.6 0.7 1.0 O C:ILE187 4.0 0.8 1.0 C4' 2:C1472 4.0 0.2 1.0 C C:THR189 4.2 0.7 1.0 C C:ILE187 4.2 0.8 1.0 O5' 2:U1473 4.2 1.0 1.0 N C:ILE190 4.4 0.1 1.0 CB C:THR189 4.4 0.7 1.0 N C:LYS188 4.4 1.0 1.0 CA C:LYS188 4.4 1.0 1.0 C C:ASN186 4.4 0.8 1.0 CB C:ALA183 4.5 0.0 1.0 C C:ALA183 4.5 0.0 1.0 C1' 2:C1472 4.5 0.2 1.0 C5' 2:C1472 4.5 0.2 1.0 CA C:ALA183 4.8 0.0 1.0 CA C:ILE187 4.9 0.8 1.0 O4' 2:C1472 4.9 0.2 1.0 O C:THR189 5.0 0.7 1.0

Magnesium binding site 3 out of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ k:Mg702 b:21.1 occ:1.00 O2B k:ATP703 2.2 28.5 1.0 O1G k:ATP703 2.2 28.5 1.0 O3G k:ATP703 2.2 28.5 1.0 PG k:ATP703 2.6 28.5 1.0 PB k:ATP703 3.0 28.5 1.0 O3B k:ATP703 3.1 28.5 1.0 O1B k:ATP703 3.6 28.5 1.0 CB k:THR392 3.9 0.7 1.0 O2G k:ATP703 4.0 28.5 1.0 N k:GLY224 4.1 0.7 1.0 O3A k:ATP703 4.5 28.5 1.0 CB k:SER223 4.7 0.6 1.0 CA k:GLY224 4.7 0.7 1.0 CB k:GLN420 4.7 0.7 1.0

Magnesium binding site 4 out of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ k:Mg704 b:18.9 occ:1.00 O1B k:ADP701 2.4 23.4 1.0 PB k:ADP701 3.7 23.4 1.0 O2B k:ADP701 4.1 23.4 1.0 N k:SER117 4.3 0.7 1.0 CB k:LYS116 4.4 0.7 1.0 O1A k:ADP701 4.5 23.4 1.0 CA k:SER117 4.6 0.7 1.0 CB k:SER117 4.6 0.7 1.0 CB k:ASP246 4.6 0.8 1.0 O2A k:ADP701 4.7 23.4 1.0 C k:LYS116 4.7 0.7 1.0 O3B k:ADP701 4.7 23.4 1.0 O3A k:ADP701 4.7 23.4 1.0 PA k:ADP701 4.8 23.4 1.0 CB k:GLN171 4.9 0.7 1.0 CB k:VAL277 5.0 0.8 1.0

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.