Magnesium in PDB 6zu9: Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Other elements in 6zu9:
The structure of Structure of A Yeast ABCE1-Bound 48S Initiation Complex also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
(pdb code 6zu9). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Structure of A Yeast ABCE1-Bound 48S Initiation Complex, PDB code: 6zu9:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 6zu9
Go back to
Magnesium Binding Sites List in 6zu9
Magnesium binding site 1 out
of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Mg1901
b:0.2
occ:1.00
|
O
|
S:ARG30
|
2.1
|
0.1
|
1.0
|
OP1
|
2:C449
|
2.1
|
0.7
|
1.0
|
C
|
S:ARG30
|
3.2
|
0.1
|
1.0
|
P
|
2:C449
|
3.4
|
0.7
|
1.0
|
CB
|
S:ARG30
|
3.5
|
0.1
|
1.0
|
CA
|
S:ARG30
|
3.7
|
0.1
|
1.0
|
O5'
|
2:C449
|
3.7
|
0.7
|
1.0
|
N
|
S:ARG30
|
3.8
|
0.1
|
1.0
|
C5'
|
2:C449
|
3.9
|
0.7
|
1.0
|
CB
|
S:THR81
|
4.0
|
0.5
|
1.0
|
N
|
S:PRO31
|
4.3
|
0.0
|
1.0
|
OP2
|
2:C449
|
4.3
|
0.7
|
1.0
|
N
|
S:SER32
|
4.5
|
0.8
|
1.0
|
C
|
S:PRO31
|
4.5
|
0.0
|
1.0
|
O
|
S:LYS7
|
4.5
|
0.2
|
1.0
|
OP2
|
2:U450
|
4.5
|
0.7
|
1.0
|
O3'
|
2:C448
|
4.6
|
0.4
|
1.0
|
CA
|
S:PRO31
|
4.7
|
0.0
|
1.0
|
C
|
S:PRO29
|
4.7
|
0.7
|
1.0
|
O
|
S:PRO31
|
4.8
|
0.0
|
1.0
|
O3'
|
2:C449
|
4.8
|
0.7
|
1.0
|
OP1
|
2:U450
|
4.9
|
0.7
|
1.0
|
P
|
2:U450
|
5.0
|
0.7
|
1.0
|
C4'
|
2:C449
|
5.0
|
0.7
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 6zu9
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Magnesium Binding Sites List in 6zu9
Magnesium binding site 2 out
of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Mg1902
b:0.4
occ:1.00
|
OP1
|
2:U1473
|
2.2
|
1.0
|
1.0
|
O
|
C:LYS188
|
2.5
|
1.0
|
1.0
|
C3'
|
2:C1472
|
2.6
|
0.2
|
1.0
|
P
|
2:U1473
|
2.7
|
1.0
|
1.0
|
O3'
|
2:C1472
|
2.8
|
0.2
|
1.0
|
O2'
|
2:C1472
|
3.0
|
0.2
|
1.0
|
C2'
|
2:C1472
|
3.1
|
0.2
|
1.0
|
OP2
|
2:U1473
|
3.2
|
1.0
|
1.0
|
C
|
C:LYS188
|
3.2
|
1.0
|
1.0
|
O
|
C:ASN186
|
3.3
|
0.8
|
1.0
|
CA
|
C:THR189
|
3.4
|
0.7
|
1.0
|
O
|
C:ALA183
|
3.5
|
0.0
|
1.0
|
N
|
C:THR189
|
3.6
|
0.7
|
1.0
|
O
|
C:ILE187
|
4.0
|
0.8
|
1.0
|
C4'
|
2:C1472
|
4.0
|
0.2
|
1.0
|
C
|
C:THR189
|
4.2
|
0.7
|
1.0
|
C
|
C:ILE187
|
4.2
|
0.8
|
1.0
|
O5'
|
2:U1473
|
4.2
|
1.0
|
1.0
|
N
|
C:ILE190
|
4.4
|
0.1
|
1.0
|
CB
|
C:THR189
|
4.4
|
0.7
|
1.0
|
N
|
C:LYS188
|
4.4
|
1.0
|
1.0
|
CA
|
C:LYS188
|
4.4
|
1.0
|
1.0
|
C
|
C:ASN186
|
4.4
|
0.8
|
1.0
|
CB
|
C:ALA183
|
4.5
|
0.0
|
1.0
|
C
|
C:ALA183
|
4.5
|
0.0
|
1.0
|
C1'
|
2:C1472
|
4.5
|
0.2
|
1.0
|
C5'
|
2:C1472
|
4.5
|
0.2
|
1.0
|
CA
|
C:ALA183
|
4.8
|
0.0
|
1.0
|
CA
|
C:ILE187
|
4.9
|
0.8
|
1.0
|
O4'
|
2:C1472
|
4.9
|
0.2
|
1.0
|
O
|
C:THR189
|
5.0
|
0.7
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 6zu9
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Magnesium Binding Sites List in 6zu9
Magnesium binding site 3 out
of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Mg702
b:21.1
occ:1.00
|
O2B
|
k:ATP703
|
2.2
|
28.5
|
1.0
|
O1G
|
k:ATP703
|
2.2
|
28.5
|
1.0
|
O3G
|
k:ATP703
|
2.2
|
28.5
|
1.0
|
PG
|
k:ATP703
|
2.6
|
28.5
|
1.0
|
PB
|
k:ATP703
|
3.0
|
28.5
|
1.0
|
O3B
|
k:ATP703
|
3.1
|
28.5
|
1.0
|
O1B
|
k:ATP703
|
3.6
|
28.5
|
1.0
|
CB
|
k:THR392
|
3.9
|
0.7
|
1.0
|
O2G
|
k:ATP703
|
4.0
|
28.5
|
1.0
|
N
|
k:GLY224
|
4.1
|
0.7
|
1.0
|
O3A
|
k:ATP703
|
4.5
|
28.5
|
1.0
|
CB
|
k:SER223
|
4.7
|
0.6
|
1.0
|
CA
|
k:GLY224
|
4.7
|
0.7
|
1.0
|
CB
|
k:GLN420
|
4.7
|
0.7
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 6zu9
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Magnesium Binding Sites List in 6zu9
Magnesium binding site 4 out
of 4 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Mg704
b:18.9
occ:1.00
|
O1B
|
k:ADP701
|
2.4
|
23.4
|
1.0
|
PB
|
k:ADP701
|
3.7
|
23.4
|
1.0
|
O2B
|
k:ADP701
|
4.1
|
23.4
|
1.0
|
N
|
k:SER117
|
4.3
|
0.7
|
1.0
|
CB
|
k:LYS116
|
4.4
|
0.7
|
1.0
|
O1A
|
k:ADP701
|
4.5
|
23.4
|
1.0
|
CA
|
k:SER117
|
4.6
|
0.7
|
1.0
|
CB
|
k:SER117
|
4.6
|
0.7
|
1.0
|
CB
|
k:ASP246
|
4.6
|
0.8
|
1.0
|
O2A
|
k:ADP701
|
4.7
|
23.4
|
1.0
|
C
|
k:LYS116
|
4.7
|
0.7
|
1.0
|
O3B
|
k:ADP701
|
4.7
|
23.4
|
1.0
|
O3A
|
k:ADP701
|
4.7
|
23.4
|
1.0
|
PA
|
k:ADP701
|
4.8
|
23.4
|
1.0
|
CB
|
k:GLN171
|
4.9
|
0.7
|
1.0
|
CB
|
k:VAL277
|
5.0
|
0.8
|
1.0
|
|
Reference:
H.Kratzat,
T.Mackens-Kiani,
A.Ameismeier,
J.Cheng,
E.Dacheux,
A.Namane,
O.Berninghausen,
M.Fromont-Racine,
T.Becker,
R.Beckmann.
Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Tue Dec 15 03:14:09 2020
|