Atomistry » Magnesium » PDB 7adt-7aoh » 7adt
Atomistry »
  Magnesium »
    PDB 7adt-7aoh »
      7adt »

Magnesium in PDB 7adt: Orf Virus Apoptosis Inhibitor ORFV125

Protein crystallography data

The structure of Orf Virus Apoptosis Inhibitor ORFV125, PDB code: 7adt was solved by C.D.Suraweera, M.G.Hinds, M.Kvansakul, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.34 / 2.21
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.511, 45.564, 105.965, 90, 106.06, 90
R / Rfree (%) 23.3 / 25.9

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 41;

Binding sites:

The binding sites of Magnesium atom in the Orf Virus Apoptosis Inhibitor ORFV125 (pdb code 7adt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 41 binding sites of Magnesium where determined in the Orf Virus Apoptosis Inhibitor ORFV125, PDB code: 7adt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 1 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg207

b:50.9
occ:1.00
HA A:ALA81 2.5 53.4 1.0
HB3 A:PRO123 3.1 42.2 1.0
HG1 A:THR83 3.2 86.0 1.0
HB A:THR83 3.2 73.3 1.0
HB1 A:ALA81 3.3 45.6 1.0
CA A:ALA81 3.4 44.5 1.0
N A:THR83 3.5 49.9 1.0
HB2 A:ALA81 3.5 45.6 1.0
CB A:ALA81 3.6 38.0 1.0
OG1 A:THR83 3.8 71.7 1.0
CB A:THR83 3.8 61.1 1.0
CB A:PRO123 3.9 35.2 1.0
HB2 A:PRO123 3.9 42.2 1.0
HG3 A:PRO123 4.1 43.3 1.0
C A:ALA81 4.1 43.1 1.0
CA A:THR83 4.2 50.2 1.0
O A:THR83 4.4 45.1 1.0
N A:ALA81 4.4 43.1 1.0
CG A:PRO123 4.6 36.1 1.0
HB3 A:ALA81 4.6 45.6 1.0
C A:THR83 4.7 42.9 1.0
H A:ALA81 4.8 51.8 1.0
O A:GLU80 4.9 39.7 1.0
O A:HOH304 5.0 52.0 1.0
MG A:MG214 5.0 63.4 1.0

Magnesium binding site 2 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 2 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg208

b:70.8
occ:1.00
HG2 A:ARG113 2.4 96.8 1.0
HH11 A:ARG113 2.8 120.8 1.0
HB2 A:ARG113 2.9 86.6 1.0
CG A:ARG113 3.2 80.7 1.0
CB A:ARG113 3.4 72.1 1.0
HB3 A:ARG113 3.4 86.6 1.0
HD3 A:ARG113 3.4 103.3 1.0
NH1 A:ARG113 3.5 100.7 1.0
HG12 A:VAL109 3.6 108.9 1.0
CD A:ARG113 3.8 86.1 1.0
HH12 A:ARG113 3.9 120.8 1.0
HG3 A:ARG113 4.0 96.8 1.0
HA A:ASP110 4.2 97.0 1.0
CZ A:ARG113 4.4 97.3 1.0
CG1 A:VAL109 4.4 90.8 1.0
NE A:ARG113 4.5 90.7 1.0
HG11 A:VAL109 4.5 108.9 1.0
O A:VAL109 4.6 86.5 1.0
HD2 A:ARG113 4.6 103.3 1.0
HG13 A:VAL109 4.8 108.9 1.0
CA A:ARG113 4.8 63.0 1.0
HG A:SER68 4.9 117.0 1.0

Magnesium binding site 3 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 3 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg209

b:63.8
occ:1.00
HB3 A:ALA126 3.5 35.3 1.0
O A:PRO123 4.0 51.3 1.0
HB2 A:LEU122 4.1 55.8 1.0
HD12 A:LEU122 4.2 58.2 1.0
HA A:PRO124 4.3 66.9 1.0
HB3 A:LEU122 4.3 55.8 1.0
CB A:ALA126 4.4 29.4 1.0
O A:PRO124 4.5 64.5 1.0
OD1 A:ASP127 4.5 40.8 1.0
H A:ALA126 4.5 50.7 1.0
HB2 A:ALA126 4.5 35.3 1.0
OD2 A:ASP127 4.6 49.2 1.0
HD13 A:LEU122 4.6 58.2 1.0
CB A:LEU122 4.7 46.5 1.0
H A:ASP127 4.7 54.6 1.0
HB3 B:SER10 4.7 52.7 1.0
CG A:ASP127 4.8 43.3 1.0
CD1 A:LEU122 4.9 48.5 1.0
HB1 A:ALA126 4.9 35.3 1.0
C A:PRO124 5.0 59.7 1.0

Magnesium binding site 4 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 4 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg210

b:84.1
occ:1.00
HA3 A:GLY131 1.7 65.3 1.0
CA A:GLY131 2.6 54.4 1.0
HG12 B:ILE7 2.6 83.4 1.0
HA2 A:GLY131 2.9 65.3 1.0
H B:ILE7 2.9 99.8 1.0
OD1 B:ASP6 2.9 86.9 1.0
C A:GLY131 3.3 56.7 1.0
H A:GLY131 3.6 63.1 1.0
N B:ILE7 3.6 83.2 1.0
CG1 B:ILE7 3.6 69.5 1.0
N A:GLY131 3.6 52.6 1.0
CA B:ASP6 3.6 93.9 1.0
O A:ASP127 3.7 49.8 1.0
HA A:GLU128 3.7 62.4 1.0
HG23 B:ILE7 3.7 78.9 1.0
HE21 A:GLN135 3.8 104.5 1.0
CG B:ASP6 3.8 87.8 1.0
HE22 A:GLN135 3.8 104.5 1.0
HG13 B:ILE7 3.9 83.4 1.0
O A:GLY131 3.9 56.3 1.0
CB B:ASP6 4.0 88.7 1.0
N A:ALA132 4.0 55.7 1.0
NE2 A:GLN135 4.0 87.1 1.0
H A:ALA132 4.1 66.8 1.0
C B:ASP6 4.1 90.6 1.0
HD11 B:ILE7 4.2 84.2 1.0
CD1 B:ILE7 4.4 70.2 1.0
CB B:ILE7 4.4 67.1 1.0
HD13 B:ILE7 4.4 84.2 1.0
CG2 B:ILE7 4.5 65.7 1.0
CA B:ILE7 4.6 72.2 1.0
O B:ASP5 4.6 104.6 1.0
O A:GLU128 4.6 59.2 1.0
CA A:GLU128 4.6 52.0 1.0
C A:ASP127 4.7 47.6 1.0
HG21 B:ILE7 4.7 78.9 1.0
N B:ASP6 4.8 101.5 1.0
C A:LEU130 4.9 50.8 1.0
OD2 B:ASP6 4.9 88.0 1.0
C A:GLU128 5.0 54.9 1.0

Magnesium binding site 5 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 5 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg211

b:70.0
occ:1.00
HG3 A:ARG41 2.6 78.9 1.0
HB2 A:ARG41 3.1 64.3 1.0
CG A:ARG41 3.4 65.7 1.0
HG A:LEU37 3.6 48.8 1.0
HD1 B:TYR16 3.6 48.9 1.0
HD11 A:LEU37 3.7 45.7 1.0
CB A:ARG41 3.7 53.6 1.0
HG2 A:ARG41 3.9 78.9 1.0
HE A:ARG41 3.9 103.8 1.0
HB3 A:ARG41 4.1 64.3 1.0
CD1 A:LEU37 4.3 38.1 1.0
HD12 A:LEU37 4.3 45.7 1.0
HA A:GLU38 4.3 65.2 1.0
HD21 A:LEU37 4.3 47.5 1.0
CG A:LEU37 4.3 40.6 1.0
O A:LEU37 4.4 44.0 1.0
CD1 B:TYR16 4.5 40.7 1.0
HE1 B:TYR16 4.5 50.5 1.0
CD A:ARG41 4.5 77.9 1.0
NE A:ARG41 4.5 86.5 1.0
HA B:TYR16 4.7 50.2 1.0
HD3 A:ARG41 4.8 93.5 1.0
CD2 A:LEU37 4.8 39.5 1.0
OE2 B:GLU20 4.9 56.2 1.0
CE1 B:TYR16 4.9 42.1 1.0
HG2 B:ARG19 4.9 57.9 1.0
CA A:ARG41 5.0 45.2 1.0

Magnesium binding site 6 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 6 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg212

b:69.2
occ:1.00
HH12 A:ARG48 2.5 106.4 1.0
OH B:TYR16 2.8 45.0 1.0
O A:ARG41 2.9 47.5 1.0
HB2 A:GLU45 2.9 78.8 1.0
HG2 A:ARG41 3.0 78.9 1.0
HH22 A:ARG48 3.1 113.4 1.0
HE1 B:TYR16 3.2 50.5 1.0
HH B:TYR16 3.3 54.0 1.0
NH1 A:ARG48 3.4 88.7 1.0
HD2 A:ARG41 3.4 93.5 1.0
HA A:ARG41 3.5 54.3 1.0
H A:GLU45 3.5 54.7 1.0
HD3 A:ARG41 3.5 93.5 1.0
N A:GLU45 3.6 45.6 1.0
HA A:GLU45 3.6 67.5 1.0
CZ B:TYR16 3.7 41.5 1.0
CD A:ARG41 3.8 77.9 1.0
CE1 B:TYR16 3.8 42.1 1.0
CG A:ARG41 3.8 65.7 1.0
CB A:GLU45 3.8 65.7 1.0
NH2 A:ARG48 3.8 94.5 1.0
C A:ARG41 3.8 47.8 1.0
CA A:GLU45 3.9 56.2 1.0
HH11 A:ARG48 3.9 106.4 1.0
CZ A:ARG48 4.0 89.2 1.0
CA A:ARG41 4.1 45.2 1.0
C A:GLY44 4.1 43.1 1.0
HA3 A:GLY44 4.1 51.1 1.0
HH22 A:ARG100 4.2 93.3 1.0
OE1 A:GLU93 4.3 41.8 1.0
HB3 A:GLU45 4.4 78.8 1.0
HG3 A:GLU45 4.4 94.5 1.0
HG3 A:ARG41 4.5 78.9 1.0
CB A:ARG41 4.5 53.6 1.0
HH21 A:ARG48 4.5 113.4 1.0
OE2 A:GLU93 4.5 44.6 1.0
CA A:GLY44 4.6 42.6 1.0
CG A:GLU45 4.6 78.8 1.0
O A:GLY44 4.7 39.9 1.0
HH11 A:ARG41 4.8 116.4 1.0
CD A:GLU93 4.8 41.9 1.0
OE2 B:GLU20 4.8 56.2 1.0
H A:GLY44 4.9 53.2 1.0
CD B:GLU20 4.9 52.5 1.0
NH2 A:ARG100 4.9 77.7 1.0
OE1 B:GLU20 5.0 56.8 1.0
CE2 B:TYR16 5.0 38.0 1.0

Magnesium binding site 7 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 7 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg213

b:99.1
occ:1.00
ND1 A:HIS69 4.1 104.4 1.0
CG A:HIS69 4.1 102.3 1.0
CD2 A:HIS69 4.2 103.2 1.0
CE1 A:HIS69 4.2 105.2 1.0
NE2 A:HIS69 4.3 103.8 1.0
HB3 A:HIS69 4.4 116.5 1.0
HB2 A:HIS69 4.5 116.5 1.0
HE1 A:HIS69 4.6 126.2 1.0
HD2 A:HIS69 4.6 123.8 1.0
CB A:HIS69 4.6 97.1 1.0
HE2 A:HIS69 4.7 124.6 1.0

Magnesium binding site 8 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 8 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg214

b:63.4
occ:1.00
C A:ALA81 2.6 43.1 1.0
O A:ALA81 2.8 47.0 1.0
N A:THR83 3.7 49.9 1.0
CA A:ALA81 3.9 44.5 1.0
HA A:ALA81 4.0 53.4 1.0
HB1 A:ALA81 4.2 45.6 1.0
CB A:ALA81 4.5 38.0 1.0
O A:GLU80 4.6 39.7 1.0
HB3 A:ALA81 4.8 45.6 1.0
MG A:MG207 5.0 50.9 1.0
N A:ALA81 5.0 43.1 1.0

Magnesium binding site 9 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 9 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg215

b:81.9
occ:1.00
OD1 A:ASP6 2.9 118.2 1.0
MG A:MG216 3.5 93.2 1.0
HB3 A:ASP5 4.0 149.1 1.0
CG A:ASP6 4.1 113.4 1.0
HA A:ASP6 4.2 120.6 1.0
O A:ASP5 4.4 123.0 1.0
C A:ASP5 4.5 118.7 1.0
HH12 B:ARG32 4.7 119.2 1.0
OD2 A:ASP6 4.7 117.2 1.0
N A:ASP6 4.8 109.7 1.0
MG A:MG224 4.8 126.2 1.0
CB A:ASP5 4.9 124.2 1.0
CA A:ASP6 4.9 100.5 1.0
HH22 B:ARG32 5.0 122.2 1.0

Magnesium binding site 10 out of 41 in 7adt

Go back to Magnesium Binding Sites List in 7adt
Magnesium binding site 10 out of 41 in the Orf Virus Apoptosis Inhibitor ORFV125


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Orf Virus Apoptosis Inhibitor ORFV125 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg216

b:93.2
occ:1.00
O A:ASP5 3.0 123.0 1.0
MG A:MG215 3.5 81.9 1.0
HA A:ASP6 3.5 120.6 1.0
C A:ASP5 4.1 118.7 1.0
HH12 B:ARG32 4.1 119.2 1.0
HB3 A:ASP5 4.3 149.1 1.0
HH11 B:ARG32 4.4 119.2 1.0
CA A:ASP6 4.4 100.5 1.0
OD1 A:ASP6 4.5 118.2 1.0
NH1 B:ARG32 4.5 99.3 1.0
CG A:ASP5 4.7 126.5 1.0
N A:ASP6 4.7 109.7 1.0
MG A:MG224 4.7 126.2 1.0
OD2 A:ASP5 4.8 127.5 1.0
CB A:ASP5 4.8 124.2 1.0
OD1 A:ASP5 4.9 125.4 1.0

Reference:

C.D.Suraweera, M.G.Hinds, M.Kvansakul. Orf Virus Apoptosis Inhibitor ORFV125 To Be Published.
Page generated: Wed Oct 2 09:37:42 2024

Last articles

V in 1UZI
V in 1VOM
V in 1YV3
V in 1VNI
V in 1VNH
V in 1VNG
V in 1VNF
V in 1VNE
V in 1VNC
V in 1VFZ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy