Magnesium in PDB 7ctv: Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium:
2.7.10.1; 2.7.11.1;

The structure of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium, PDB code: 7ctv was solved by X.Wei, Y.L.Wang, T.Y.Gu, F.J.Xin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.39 / 2.89
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.57, 50.889, 105.416, 90, 95.35, 90
R / Rfree (%)	21.7 / 23.9

The binding sites of Magnesium atom in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium (pdb code 7ctv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium, PDB code: 7ctv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:103.5 occ:1.00 OD2 A:ASP507 2.2 103.5 1.0 O2A A:ANP702 2.4 57.4 1.0 O2B A:ANP702 2.8 61.6 1.0 OD1 A:ASN494 2.9 79.9 1.0 C5' A:ANP702 3.3 44.4 1.0 CG A:ASP507 3.4 81.2 1.0 O A:ALA493 3.4 66.5 1.0 PA A:ANP702 3.4 65.2 1.0 C8 A:ANP702 3.5 61.6 1.0 O5' A:ANP702 3.5 54.4 1.0 O1G A:ANP702 3.7 72.9 1.0 O4' A:ANP702 3.9 63.6 1.0 C4' A:ANP702 3.9 60.2 1.0 C3' A:ANP702 4.0 63.7 1.0 PB A:ANP702 4.0 74.5 1.0 OD1 A:ASP507 4.1 84.4 1.0 CG A:ASN494 4.2 67.7 1.0 O3A A:ANP702 4.2 69.9 1.0 C A:ALA493 4.2 64.0 1.0 N7 A:ANP702 4.3 63.4 1.0 CB A:ASP507 4.3 62.3 1.0 N9 A:ANP702 4.4 61.4 1.0 CA A:ASN494 4.5 39.4 1.0 N A:ASN494 4.7 54.3 1.0 C1' A:ANP702 4.7 55.2 1.0 O1A A:ANP702 4.7 77.7 1.0 OG A:SER506 4.7 69.8 1.0 CB A:ALA493 4.8 54.6 1.0 C2' A:ANP702 4.9 55.6 1.0 CG2 A:VAL361 4.9 75.1 1.0 CB A:ASN494 5.0 70.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:202.0 occ:1.00 O2A B:ANP702 2.5 99.2 1.0 O2B B:ANP702 2.5 109.3 1.0 OD1 B:ASP507 2.5 112.8 1.0 OD1 B:ASN494 2.6 101.5 1.0 O B:ALA493 3.3 97.4 1.0 C B:ALA493 3.5 94.0 1.0 CG B:ASP507 3.6 109.6 1.0 C5' B:ANP702 3.7 94.1 1.0 PA B:ANP702 3.7 101.4 1.0 CG B:ASN494 3.7 98.1 1.0 N B:ASN494 3.7 84.1 1.0 CA B:ASN494 3.8 88.0 1.0 PB B:ANP702 3.8 99.7 1.0 O1G B:ANP702 3.9 99.1 1.0 CB B:ALA493 4.0 86.9 1.0 O5' B:ANP702 4.1 92.5 1.0 C8 B:ANP702 4.2 87.9 1.0 O3A B:ANP702 4.2 99.4 1.0 CB B:ASN494 4.3 92.0 1.0 CB B:ASP507 4.3 109.0 1.0 CA B:ALA493 4.3 93.9 1.0 C3' B:ANP702 4.4 105.7 1.0 O4' B:ANP702 4.4 89.7 1.0 C4' B:ANP702 4.4 97.2 1.0 OD2 B:ASP507 4.5 109.9 1.0 OG B:SER506 4.7 97.3 1.0 O1B B:ANP702 4.7 101.5 1.0 ND2 B:ASN494 4.8 102.2 1.0 N3B B:ANP702 4.8 96.6 1.0 O1A B:ANP702 4.9 108.8 1.0 N7 B:ANP702 4.9 90.9 1.0

X.Wei, Y.L.Wang, T.Y.Gu, F.J.Xin. Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain D489A Mutant in Complex with Amp-Pnp and Magnesium To Be Published.