Magnesium in PDB 7d86: Crystal Structure of ZEBRAFISHPHF14-Pzp

Protein crystallography data

The structure of Crystal Structure of ZEBRAFISHPHF14-Pzp, PDB code: 7d86 was solved by H.T.Li, S.P.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.68 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.193, 41.907, 52.878, 90, 98.95, 90
R / Rfree (%) 17.4 / 22.5

Other elements in 7d86:

The structure of Crystal Structure of ZEBRAFISHPHF14-Pzp also contains other interesting chemical elements:

Zinc (Zn) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of ZEBRAFISHPHF14-Pzp (pdb code 7d86). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of ZEBRAFISHPHF14-Pzp, PDB code: 7d86:

Magnesium binding site 1 out of 1 in 7d86

Go back to Magnesium Binding Sites List in 7d86
Magnesium binding site 1 out of 1 in the Crystal Structure of ZEBRAFISHPHF14-Pzp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of ZEBRAFISHPHF14-Pzp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg506

b:33.0
occ:1.00
OD2 A:ASP455 2.0 35.0 1.0
O A:HOH601 2.0 29.5 1.0
O A:HOH646 2.1 40.6 1.0
O A:HOH607 2.1 29.9 1.0
O A:HOH642 2.1 34.5 1.0
CG A:ASP455 2.7 33.3 1.0
OD1 A:ASP455 2.8 33.4 1.0
O A:HOH612 4.1 35.0 1.0
O A:LEU376 4.1 35.0 1.0
O A:PHE457 4.1 31.5 1.0
CB A:ASP455 4.2 27.7 1.0
O A:HOH651 4.3 43.3 1.0
O A:TYR377 4.3 27.4 1.0
O A:HOH632 4.4 34.9 1.0
O A:HOH605 4.4 36.3 1.0
O A:HOH629 4.5 33.5 1.0
C A:TYR377 4.8 30.2 1.0
CE2 A:PHE383 4.8 55.8 1.0
CA A:TYR377 4.8 28.0 1.0
CB A:PHE457 4.9 25.1 1.0

Reference:

H.T.Li, S.P.Zheng. Crystal Structure of ZEBRAFISHPHF14-Pzp To Be Published.
Page generated: Sat Aug 21 16:23:09 2021

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