Magnesium in PDB 7don: Structure of Tubulin H392D Mutant From Odinarchaeota

The structure of Structure of Tubulin H392D Mutant From Odinarchaeota, PDB code: 7don was solved by R.C.Robinson, C.Akil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.31 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.21, 92.614, 102.143, 90, 90, 90
R / Rfree (%)	17.1 / 20.8

The binding sites of Magnesium atom in the Structure of Tubulin H392D Mutant From Odinarchaeota (pdb code 7don). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Tubulin H392D Mutant From Odinarchaeota, PDB code: 7don:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Tubulin H392D Mutant From Odinarchaeota


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Tubulin H392D Mutant From Odinarchaeota within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:25.9 occ:1.00 O B:HOH650 2.1 30.1 1.0 O B:HOH656 2.2 24.9 1.0 O B:HOH620 2.3 30.8 1.0 O2B B:GTP501 2.4 22.5 0.8 O2G B:GTP501 2.4 31.8 0.8 O1B B:GDP502 2.5 23.3 0.2 PG B:GTP501 3.3 30.4 0.8 MG B:MG504 3.3 31.1 1.0 PB B:GTP501 3.4 24.9 0.8 O3G B:GTP501 3.5 32.4 0.8 PB B:GDP502 3.6 25.1 0.2 O3B B:GTP501 3.7 26.1 0.8 O3A B:GDP502 4.0 25.6 0.2 CB B:GLN13 4.0 28.1 1.0 O3A B:GTP501 4.0 25.9 0.8 O3B B:GDP502 4.1 25.9 0.2 CG B:GLU71 4.2 35.2 1.0 OE1 B:GLU71 4.2 38.6 1.0 N B:GLN13 4.2 28.8 1.0 O2A B:GTP501 4.4 26.0 0.8 OE1 B:GLN13 4.4 29.7 1.0 OD2 B:ASP69 4.5 29.1 1.0 OD1 B:ASP69 4.5 28.5 1.0 O1G B:GTP501 4.6 24.3 0.8 CD B:GLU71 4.6 38.8 1.0 CA B:GLN13 4.7 29.4 1.0 O1B B:GTP501 4.7 25.9 0.8 PA B:GTP501 4.7 25.4 0.8 CG B:ASP69 4.9 28.4 1.0 O2B B:GDP502 5.0 25.6 0.2 O2A B:GDP502 5.0 25.3 0.2

Magnesium binding site 2 out of 2 in the Structure of Tubulin H392D Mutant From Odinarchaeota


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Tubulin H392D Mutant From Odinarchaeota within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg504 b:31.1 occ:1.00 O B:HOH656 2.5 24.9 1.0 O2G B:GTP501 2.5 31.8 0.8 MG B:MG503 3.3 25.9 1.0 OD1 B:ASN102 3.9 27.4 1.0 PG B:GTP501 4.1 30.4 0.8 O2A B:GTP501 4.1 26.0 0.8 O3A B:GDP502 4.3 25.6 0.2 O3A B:GTP501 4.5 25.9 0.8 O1G B:GTP501 4.5 24.3 0.8 OE1 B:GLN13 4.6 29.7 1.0 O2A B:GDP502 4.6 25.3 0.2 O2B B:GTP501 4.8 22.5 0.8 O1B B:GDP502 4.8 23.3 0.2 CG B:ASN102 4.9 26.3 1.0 O3B B:GTP501 5.0 26.1 0.8 PA B:GTP501 5.0 25.4 0.8 PB B:GTP501 5.0 24.9 0.8

R.C.Robinson, C.Akil. Structure of Tubulin H392D Mutant From Odinarchaeota To Be Published.