Magnesium in PDB 7jih: Hras A59E Gppnhp

The structure of Hras A59E Gppnhp, PDB code: 7jih was solved by C.W.Johnson, K.M.Haigis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.17 / 1.99
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.675, 49.832, 57.32, 90, 117.81, 90
R / Rfree (%)	19.6 / 25.4

The binding sites of Magnesium atom in the Hras A59E Gppnhp (pdb code 7jih). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Hras A59E Gppnhp, PDB code: 7jih:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Hras A59E Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hras A59E Gppnhp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:37.4 occ:1.00 O A:HOH312 1.9 32.3 1.0 O2G A:GNP201 2.0 35.3 1.0 OG A:SER17 2.1 31.4 1.0 O2B A:GNP201 2.1 26.6 1.0 O A:HOH303 2.3 36.2 1.0 O A:HOH335 2.4 37.3 1.0 CB A:SER17 3.1 27.6 1.0 PB A:GNP201 3.2 31.6 1.0 PG A:GNP201 3.3 45.3 1.0 N3B A:GNP201 3.4 32.8 1.0 OD2 A:ASP57 3.6 35.2 1.0 N A:SER17 3.7 30.3 1.0 CA A:SER17 3.9 29.5 1.0 OD1 A:ASP57 4.0 28.2 1.0 O3G A:GNP201 4.1 35.0 1.0 O2A A:GNP201 4.2 32.1 1.0 CG A:ASP57 4.2 31.2 1.0 O1B A:GNP201 4.2 31.3 1.0 O3A A:GNP201 4.3 27.5 1.0 O2 A:GOL203 4.4 48.0 1.0 O A:THR58 4.5 42.8 1.0 O1G A:GNP201 4.5 47.3 1.0 PA A:GNP201 4.5 28.8 1.0 C2 A:GOL203 4.6 53.0 1.0 O1A A:GNP201 4.6 31.2 1.0 CB A:LYS16 4.7 26.7 1.0 C A:LYS16 4.8 31.1 1.0 CE A:LYS16 4.9 31.9 1.0

Magnesium binding site 2 out of 2 in the Hras A59E Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hras A59E Gppnhp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:34.0 occ:1.00 O2G B:GNP201 1.9 37.8 1.0 O B:HOH313 2.0 30.2 1.0 O2B B:GNP201 2.1 31.2 1.0 O B:HOH310 2.1 32.4 1.0 OG B:SER17 2.3 29.1 1.0 O B:HOH325 2.3 35.5 1.0 PG B:GNP201 3.2 34.9 1.0 PB B:GNP201 3.3 29.1 1.0 CB B:SER17 3.4 31.3 1.0 N3B B:GNP201 3.4 34.5 1.0 O1 B:GOL203 3.8 42.4 1.0 O3G B:GNP201 4.0 36.3 1.0 O2A B:GNP201 4.0 38.7 1.0 OD2 B:ASP57 4.1 37.4 1.0 N B:SER17 4.1 27.0 1.0 OD2 B:ASP33 4.2 49.9 1.0 O3A B:GNP201 4.2 25.0 1.0 O1B B:GNP201 4.3 26.3 1.0 C1 B:GOL203 4.3 47.8 1.0 CA B:SER17 4.3 30.7 1.0 O1G B:GNP201 4.3 44.7 1.0 PA B:GNP201 4.5 31.4 1.0 OD1 B:ASP57 4.5 34.0 1.0 O B:THR58 4.5 39.1 1.0 O2 B:GOL203 4.6 49.5 1.0 O1A B:GNP201 4.6 28.5 1.0 CG B:ASP57 4.7 35.8 1.0 C2 B:GOL203 4.9 50.5 1.0

C.W.Johnson, H.S.Seo, E.M.Terrell, M.H.Yang, F.Kleinjan, T.Gebregiworgis, G.M.C.Gasmi-Seabrook, E.A.Geffken, J.Lakhani, K.Song, P.Bashyal, O.Popow, J.A.Paulo, A.Liu, C.Mattos, C.B.Marshall, M.Ikura, D.K.Morrison, S.Dhe-Paganon, K.M.Haigis. Regulation of Gtpase Function By Autophosphorylation. Mol.Cell V. 82 950 2022.
ISSN: ISSN 1097-2765
PubMed: 35202574
DOI: 10.1016/J.MOLCEL.2022.02.011