Magnesium in PDB 7jj0: Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp

All present enzymatic activity of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp:
6.2.1.4; 6.2.1.5;

The structure of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp, PDB code: 7jj0 was solved by J.Huang, M.E.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	86.01 / 2.25
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	99.311, 99.311, 133.512, 90, 90, 120
R / Rfree (%)	23.5 / 26.5

The binding sites of Magnesium atom in the Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp (pdb code 7jj0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp, PDB code: 7jj0:

Magnesium binding site 1 out of 1 in the Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppcp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:89.7 occ:1.00 HOG2 B:GCP401 1.8 119.9 1.0 HZ1 B:LYS222 2.0 101.6 1.0 OD2 B:ASP220 2.0 79.7 1.0 O2G B:GCP401 2.1 99.7 1.0 NZ B:LYS222 2.8 84.5 1.0 HB3 B:ASP220 2.8 88.7 1.0 HZ2 B:LYS222 2.9 101.6 1.0 CG B:ASP220 2.9 78.8 1.0 O B:ASN206 2.9 63.4 1.0 HZ3 B:LYS222 3.1 101.6 1.0 O3A B:GCP401 3.1 127.1 1.0 CB B:ASP220 3.3 73.8 1.0 O2A B:GCP401 3.3 96.2 1.0 PG B:GCP401 3.4 118.9 1.0 HB3 B:ASN206 3.5 66.8 1.0 HB2 B:ASP220 3.6 88.7 1.0 O3G B:GCP401 3.6 107.0 1.0 HH21 B:ARG54 3.8 108.2 1.0 PA B:GCP401 3.8 119.5 1.0 HOB2 B:GCP401 3.9 139.8 1.0 OD1 B:ASP220 3.9 78.6 1.0 HOA2 B:GCP401 3.9 115.7 1.0 CE B:LYS222 4.0 76.2 1.0 HE2 B:LYS222 4.0 91.6 1.0 HD2 B:LYS222 4.1 85.9 1.0 C B:ASN206 4.1 56.0 1.0 HOG3 B:GCP401 4.1 128.6 1.0 PB B:GCP401 4.2 146.2 1.0 H B:ASN206 4.3 63.3 1.0 O2B B:GCP401 4.3 116.3 1.0 C3B B:GCP401 4.4 114.2 1.0 HG3 B:LYS222 4.4 84.2 1.0 CB B:ASN206 4.4 55.5 1.0 NH2 B:ARG54 4.4 90.0 1.0 O1G B:GCP401 4.5 108.5 1.0 O1A B:GCP401 4.5 108.8 1.0 CD B:LYS222 4.5 71.4 1.0 CA B:ASP220 4.7 68.1 1.0 CA B:ASN206 4.7 52.9 1.0 HE3 B:LYS222 4.7 91.6 1.0 HH22 B:ARG54 4.7 108.2 1.0 N B:ASN206 4.8 52.5 1.0 HD22 B:ASN206 4.8 75.1 1.0 C B:ASP220 4.8 66.1 1.0 HE B:ARG54 4.9 118.0 1.0 H3B1 B:GCP401 4.9 137.3 1.0 HD3 B:PRO207 5.0 71.7 1.0 HB2 B:ASN206 5.0 66.8 1.0 CG B:LYS222 5.0 70.0 1.0

J.Huang, M.E.Fraser. Second Distinct Conformation of the Phosphohistidine Loop in Succinyl-Coa Synthetase Acta Crystallogr.,Sect.D V. 77 357 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321000334