Magnesium in PDB 7jpo: Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh

The structure of Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh also contains other interesting chemical elements:

Potassium

(K)

1 atom

The binding sites of Magnesium atom in the Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh (pdb code 7jpo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh, PDB code: 7jpo:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:41.4 occ:1.00 O1B A:ATP901 2.1 44.8 1.0 OG1 A:THR541 2.1 46.2 1.0 O3G A:ATP901 2.3 44.8 1.0 OD2 A:ASP620 3.1 46.7 1.0 PB A:ATP901 3.2 44.8 1.0 O3B A:ATP901 3.3 44.8 1.0 PG A:ATP901 3.4 44.8 1.0 CB A:THR541 3.4 46.2 1.0 O3A A:ATP901 3.8 44.8 1.0 CG A:ASP620 3.9 46.7 1.0 CG2 A:THR541 4.0 46.2 1.0 OD1 A:ASP620 4.0 46.7 1.0 O1G A:ATP901 4.2 44.8 1.0 NH2 D:ARG209 4.3 32.7 1.0 O2G A:ATP901 4.5 44.8 1.0 CA A:THR541 4.5 46.2 1.0 O2B A:ATP901 4.5 44.8 1.0 N A:THR541 4.6 46.2 1.0 OE2 A:GLU621 4.7 48.4 1.0

Magnesium binding site 2 out of 3 in the Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:18.9 occ:1.00 O3B D:ATP901 2.1 24.2 1.0 O3G D:ATP901 2.5 24.2 1.0 PG D:ATP901 2.6 24.2 1.0 CG2 D:THR74 2.8 25.0 1.0 O1G D:ATP901 2.9 24.2 1.0 OG1 D:THR74 3.0 25.0 1.0 PB D:ATP901 3.3 24.2 1.0 O3A D:ATP901 3.4 24.2 1.0 CB D:THR74 3.5 25.0 1.0 O1A D:ATP901 3.8 24.2 1.0 O2B D:ATP901 3.9 24.2 1.0 O2G D:ATP901 4.1 24.2 1.0 N D:THR74 4.1 25.0 1.0 OE2 E:GLU146 4.3 24.6 1.0 PA D:ATP901 4.3 24.2 1.0 CA D:THR74 4.4 25.0 1.0 O1B D:ATP901 4.5 24.2 1.0 CD2 D:LEU192 4.8 18.5 1.0 NH1 E:ARG143 4.8 18.3 1.0 OE1 E:GLU146 4.9 24.6 1.0 CB D:LYS73 5.0 20.3 1.0 CD E:GLU146 5.0 24.6 1.0

Magnesium binding site 3 out of 3 in the Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Orc-O1AAA: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC2 Wh within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:22.5 occ:1.00 OG1 E:THR44 2.1 23.4 1.0 O3G E:ATP501 2.1 26.2 1.0 O1B E:ATP501 2.3 26.2 1.0 OD2 E:ASP125 3.2 20.1 1.0 CB E:THR44 3.4 23.4 1.0 PG E:ATP501 3.4 26.2 1.0 PB E:ATP501 3.4 26.2 1.0 O3B E:ATP501 3.6 26.2 1.0 OD1 E:ASP125 3.6 20.1 1.0 CG E:ASP125 3.8 20.1 1.0 CG2 E:THR44 4.2 23.4 1.0 N E:THR44 4.2 23.4 1.0 O2B E:ATP501 4.3 26.2 1.0 CA E:THR44 4.4 23.4 1.0 O2G E:ATP501 4.4 26.2 1.0 O1G E:ATP501 4.4 26.2 1.0 O1A E:ATP501 4.4 26.2 1.0 O3A E:ATP501 4.6 26.2 1.0 CD E:LYS126 4.9 20.4 1.0 PA E:ATP501 5.0 26.2 1.0

M.J.Jaremko, K.F.On, D.R.Thomas, B.Stillman, L.Joshua-Tor. The Dynamic Nature of the Human Origin Recognition Complex Revealed Through Five Cryoem Structures. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32808929
DOI: 10.7554/ELIFE.58622