Magnesium in PDB 7jyy: Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam)., PDB code: 7jyy was solved by G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.97 / 2.05
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	166.948, 166.948, 98.810, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 18.5

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). also contains other interesting chemical elements:

Zinc	(Zn)	4 atoms
Chlorine	(Cl)	1 atom
Sodium	(Na)	3 atoms

The binding sites of Magnesium atom in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). (pdb code 7jyy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam)., PDB code: 7jyy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg7102 b:42.3 occ:0.75 O A:HOH7324 2.2 46.3 1.0 O E:HOH107 2.2 47.1 1.0 O E:HOH103 2.2 51.4 1.0 OD1 A:ASN6996 2.2 33.4 1.0 O E:HOH106 2.2 50.6 1.0 CG A:ASN6996 3.3 30.7 1.0 O2' E:U3 3.6 0.8 1.0 ND2 A:ASN6996 3.8 29.1 1.0 OP2 E:U2 4.1 59.1 1.0 OP1 E:U2 4.1 52.3 1.0 OG A:SER6998 4.3 34.9 1.0 CB A:SER6999 4.4 28.4 1.0 O E:HOH105 4.4 49.8 1.0 CE A:MET6840 4.4 44.7 1.0 CB A:ASN6996 4.5 30.9 1.0 OP2 E:A1 4.6 52.1 1.0 P E:U2 4.6 61.1 1.0 CA A:ASN6996 4.8 30.9 1.0 C2' E:U3 4.8 0.4 1.0 O A:ASP6830 5.0 60.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg7102 b:42.9 occ:0.70 O F:HOH101 2.2 43.0 1.0 O F:HOH105 2.2 44.0 0.5 OD1 C:ASN6996 2.2 38.7 1.0 O C:HOH7241 2.2 50.3 1.0 O F:HOH103 2.2 50.9 1.0 CG C:ASN6996 3.3 36.3 1.0 O2' F:U3 3.4 97.8 1.0 ND2 C:ASN6996 3.8 36.0 1.0 OG C:SER6998 4.1 38.2 1.0 OP2 F:U2 4.2 61.8 1.0 CB C:SER6999 4.2 32.1 1.0 OP1 F:U2 4.3 54.0 1.0 O F:HOH106 4.3 56.0 1.0 CB C:ASN6996 4.6 34.8 1.0 C2' F:U3 4.6 97.5 1.0 C1' F:U3 4.6 92.7 1.0 OP2 F:A1 4.7 51.3 1.0 CE C:MET6840 4.8 47.3 1.0 P F:U2 4.8 60.0 1.0 O C:ASP6830 4.8 69.9 1.0 CA C:ASN6996 4.8 33.0 1.0 O4' F:U3 5.0 91.2 1.0 N C:SER6999 5.0 32.6 1.0

G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). To Be Published.