Magnesium in PDB 7klu: Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp

Enzymatic activity of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp

All present enzymatic activity of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp:
1.3.5.1;

Other elements in 7klu:

The structure of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp also contains other interesting chemical elements:

Potassium (K) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp (pdb code 7klu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp, PDB code: 7klu:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7klu

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Magnesium binding site 1 out of 4 in the Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:36.8
occ:1.00
O3G A:ANP901 2.1 70.3 1.0
O1B A:ANP901 2.1 70.3 1.0
OD1 A:ASN119 2.4 47.7 1.0
O2A A:ANP901 3.2 70.3 1.0
PG A:ANP901 3.4 70.3 1.0
PB A:ANP901 3.5 70.3 1.0
CG A:ASN119 3.6 47.7 1.0
O1G A:ANP901 3.9 70.3 1.0
N3B A:ANP901 4.0 70.3 1.0
CA A:GLY199 4.0 44.7 1.0
O A:GLU115 4.2 40.3 1.0
CB A:SER118 4.2 37.5 1.0
ND2 A:ASN119 4.3 47.7 1.0
N A:ASN119 4.3 47.7 1.0
N A:GLY199 4.4 44.7 1.0
OE2 A:GLU115 4.4 40.3 1.0
PA A:ANP901 4.4 70.3 1.0
O3A A:ANP901 4.4 70.3 1.0
O2B A:ANP901 4.5 70.3 1.0
CA A:ASN119 4.6 47.7 1.0
OD2 A:ASP122 4.6 49.6 1.0
O2G A:ANP901 4.6 70.3 1.0
C A:SER118 4.6 37.5 1.0
CB A:ASN119 4.7 47.7 1.0

Magnesium binding site 2 out of 4 in 7klu

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Magnesium binding site 2 out of 4 in the Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:47.4
occ:1.00
O3G B:ANP901 2.0 53.0 1.0
OD1 B:ASN119 2.0 52.7 1.0
O1B B:ANP901 2.1 53.0 1.0
O2A B:ANP901 2.2 53.0 1.0
CG B:ASN119 3.1 52.7 1.0
PG B:ANP901 3.4 53.0 1.0
PB B:ANP901 3.5 53.0 1.0
ND2 B:ASN119 3.7 52.7 1.0
PA B:ANP901 3.7 53.0 1.0
O1G B:ANP901 3.8 53.0 1.0
O B:GLU115 3.9 42.9 1.0
OE1 B:GLU115 3.9 42.9 1.0
N3B B:ANP901 4.1 53.0 1.0
O3A B:ANP901 4.1 53.0 1.0
CA B:GLY204 4.2 43.3 1.0
CB B:ASN119 4.3 52.7 1.0
N B:ASN119 4.4 52.7 1.0
O1A B:ANP901 4.5 53.0 1.0
CA B:ASN119 4.5 52.7 1.0
O2G B:ANP901 4.6 53.0 1.0
O2B B:ANP901 4.6 53.0 1.0
CA B:GLY199 4.7 56.5 1.0
C B:GLU115 4.8 42.9 1.0
O5' B:ANP901 4.8 53.0 1.0
N B:GLY204 4.8 43.3 1.0
C B:GLY204 4.8 43.3 1.0
CB B:SER118 4.8 47.0 1.0
CA B:GLU115 5.0 42.9 1.0
C B:SER118 5.0 47.0 1.0

Magnesium binding site 3 out of 4 in 7klu

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Magnesium binding site 3 out of 4 in the Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg902

b:45.1
occ:1.00
OD1 D:ASN119 2.1 55.2 1.0
O3G D:ANP901 2.1 57.1 1.0
O1B D:ANP901 2.1 57.1 1.0
O2A D:ANP901 2.4 57.1 1.0
CG D:ASN119 3.2 55.2 1.0
PG D:ANP901 3.4 57.1 1.0
PB D:ANP901 3.5 57.1 1.0
O1G D:ANP901 3.8 57.1 1.0
PA D:ANP901 3.8 57.1 1.0
ND2 D:ASN119 3.9 55.2 1.0
OE2 D:GLU115 4.0 55.8 1.0
N3B D:ANP901 4.1 57.1 1.0
O3A D:ANP901 4.2 57.1 1.0
O D:GLU115 4.2 55.8 1.0
N D:ASN119 4.2 55.2 1.0
CB D:ASN119 4.3 55.2 1.0
CA D:ASN119 4.3 55.2 1.0
CA D:GLY199 4.4 59.0 1.0
OD2 D:ASP122 4.5 70.0 1.0
O2B D:ANP901 4.5 57.1 1.0
CB D:SER118 4.6 51.8 1.0
O2G D:ANP901 4.6 57.1 1.0
C D:SER118 4.7 51.8 1.0
O1A D:ANP901 4.7 57.1 1.0
CA D:GLY204 4.8 50.8 1.0
O5' D:ANP901 4.9 57.1 1.0
N D:GLY199 4.9 59.0 1.0

Magnesium binding site 4 out of 4 in 7klu

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Magnesium binding site 4 out of 4 in the Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tetrameric Human Mitochondrial HSP90 (TRAP1) in the Presence of Amp- Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg902

b:33.6
occ:1.00
O1B C:ANP901 2.1 42.1 1.0
O3G C:ANP901 2.1 42.1 1.0
OD1 C:ASN119 2.1 37.0 1.0
O2A C:ANP901 2.9 42.1 1.0
PG C:ANP901 3.2 42.1 1.0
CG C:ASN119 3.3 37.0 1.0
O1G C:ANP901 3.4 42.1 1.0
PB C:ANP901 3.5 42.1 1.0
OE1 C:GLU115 3.6 43.3 1.0
N3B C:ANP901 3.9 42.1 1.0
ND2 C:ASN119 4.0 37.0 1.0
O C:GLU115 4.1 43.3 1.0
PA C:ANP901 4.3 42.1 1.0
N C:ASN119 4.3 37.0 1.0
O3A C:ANP901 4.4 42.1 1.0
CA C:ASN119 4.4 37.0 1.0
O2B C:ANP901 4.4 42.1 1.0
CB C:ASN119 4.4 37.0 1.0
CA C:GLY199 4.5 44.4 1.0
CB C:SER118 4.5 37.0 1.0
O2G C:ANP901 4.6 42.1 1.0
C C:SER118 4.7 37.0 1.0
CD C:GLU115 4.8 43.3 1.0
N C:GLY199 4.9 44.4 1.0
CA C:GLY204 5.0 40.6 1.0

Reference:

Y.X.Liu, D.A.Agard, D.Elnatan, M.Sun, A.G.Larson. Cryo-Em Analysis of Human Mitochondrial HSP90 in Multiple Tetrameric States To Be Published.
Page generated: Fri Nov 5 15:14:39 2021

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