Magnesium in PDB 7klv: Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp

All present enzymatic activity of Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp:
1.3.5.1;

The structure of Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Magnesium atom in the Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp (pdb code 7klv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp, PDB code: 7klv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:52.0 occ:1.00 OD1 A:ASN119 2.0 49.6 1.0 O3G A:ANP901 2.0 52.9 1.0 O1B A:ANP901 2.0 52.9 1.0 O2A A:ANP901 2.2 52.9 1.0 CG A:ASN119 3.0 49.6 1.0 PB A:ANP901 3.4 52.9 1.0 ND2 A:ASN119 3.5 49.6 1.0 PG A:ANP901 3.5 52.9 1.0 PA A:ANP901 3.5 52.9 1.0 O3A A:ANP901 3.9 52.9 1.0 O A:GLU115 4.0 48.8 1.0 N3B A:ANP901 4.1 52.9 1.0 OE2 A:GLU115 4.1 48.8 1.0 O2G A:ANP901 4.2 52.9 1.0 O1A A:ANP901 4.3 52.9 1.0 CB A:ASN119 4.3 49.6 1.0 CA A:GLY204 4.4 49.8 1.0 N A:ASN119 4.5 49.6 1.0 O1G A:ANP901 4.5 52.9 1.0 O2B A:ANP901 4.5 52.9 1.0 CA A:ASN119 4.6 49.6 1.0 C A:GLY204 4.7 49.8 1.0 O5' A:ANP901 4.7 52.9 1.0 C A:GLU115 4.8 48.8 1.0 N A:GLY204 4.8 49.8 1.0 N A:PHE205 4.8 49.4 1.0 CA A:GLY199 4.9 55.7 1.0 CB A:GLU115 4.9 48.8 1.0 CB A:SER118 4.9 48.2 1.0 CA A:GLU115 5.0 48.8 1.0

Magnesium binding site 2 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Full-Length Human Mitochondrial HSP90 (TRAP1) Spycatcher/Spytag-Sdhb Heterodimer in the Presence of Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg902 b:54.3 occ:1.00 OD1 B:ASN119 2.0 51.1 1.0 O3G B:ANP901 2.0 58.7 1.0 O2A B:ANP901 2.1 58.7 1.0 O1B B:ANP901 2.1 58.7 1.0 CG B:ASN119 3.0 51.1 1.0 PB B:ANP901 3.5 58.7 1.0 ND2 B:ASN119 3.5 51.1 1.0 PG B:ANP901 3.5 58.7 1.0 PA B:ANP901 3.6 58.7 1.0 O B:GLU115 4.0 50.6 1.0 O3A B:ANP901 4.0 58.7 1.0 OE1 B:GLU115 4.1 50.6 1.0 N3B B:ANP901 4.2 58.7 1.0 O1G B:ANP901 4.3 58.7 1.0 CB B:ASN119 4.3 51.1 1.0 CA B:GLY204 4.4 51.9 1.0 N B:ASN119 4.4 51.1 1.0 O1A B:ANP901 4.5 58.7 1.0 O2G B:ANP901 4.5 58.7 1.0 O5' B:ANP901 4.5 58.7 1.0 CA B:ASN119 4.5 51.1 1.0 O2B B:ANP901 4.6 58.7 1.0 C B:GLY204 4.7 51.9 1.0 C B:GLU115 4.8 50.6 1.0 CB B:SER118 4.8 48.3 1.0 CA B:GLY199 4.8 61.3 1.0 NH2 B:ARG402 4.9 60.8 1.0 N B:GLY204 4.9 51.9 1.0 N B:PHE205 5.0 50.9 1.0

Y.X.Liu, D.A.Agard, D.Elnatan, M.Sun, A.G.Larson. Cryo-Em Analysis of Human Mitochondrial HSP90 in Multiple Tetrameric States To Be Published.