Magnesium in PDB 7ku5: The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna
Magnesium Binding Sites:
The binding sites of Magnesium atom in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna
(pdb code 7ku5). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna, PDB code: 7ku5:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 7ku5
Go back to
Magnesium Binding Sites List in 7ku5
Magnesium binding site 1 out
of 3 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg201
b:61.5
occ:1.00
|
MG
|
O:CLA201
|
0.0
|
61.5
|
1.0
|
NB
|
O:CLA201
|
2.0
|
61.5
|
1.0
|
ND
|
O:CLA201
|
2.0
|
61.5
|
1.0
|
NC
|
O:CLA201
|
2.1
|
61.5
|
1.0
|
NA
|
O:CLA201
|
2.1
|
61.5
|
1.0
|
C4D
|
O:CLA201
|
2.9
|
61.5
|
1.0
|
C1B
|
O:CLA201
|
3.0
|
61.5
|
1.0
|
C4A
|
O:CLA201
|
3.1
|
61.5
|
1.0
|
C4B
|
O:CLA201
|
3.1
|
61.5
|
1.0
|
C1C
|
O:CLA201
|
3.1
|
61.5
|
1.0
|
C4C
|
O:CLA201
|
3.1
|
61.5
|
1.0
|
C1A
|
O:CLA201
|
3.1
|
61.5
|
1.0
|
C1D
|
O:CLA201
|
3.2
|
61.5
|
1.0
|
NE2
|
O:HIS121
|
3.2
|
60.9
|
1.0
|
CE1
|
O:HIS121
|
3.3
|
60.9
|
1.0
|
CHB
|
O:CLA201
|
3.4
|
61.5
|
1.0
|
CHC
|
O:CLA201
|
3.4
|
61.5
|
1.0
|
CHA
|
O:CLA201
|
3.5
|
61.5
|
1.0
|
CHD
|
O:CLA201
|
3.5
|
61.5
|
1.0
|
CD2
|
O:HIS121
|
4.1
|
60.9
|
1.0
|
ND1
|
O:HIS121
|
4.2
|
60.9
|
1.0
|
C3D
|
O:CLA201
|
4.3
|
61.5
|
1.0
|
C2B
|
O:CLA201
|
4.3
|
61.5
|
1.0
|
C3B
|
O:CLA201
|
4.3
|
61.5
|
1.0
|
C2C
|
O:CLA201
|
4.3
|
61.5
|
1.0
|
C2D
|
O:CLA201
|
4.4
|
61.5
|
1.0
|
C3C
|
O:CLA201
|
4.4
|
61.5
|
1.0
|
C3A
|
O:CLA201
|
4.4
|
61.5
|
1.0
|
C2A
|
O:CLA201
|
4.5
|
61.5
|
1.0
|
CG
|
O:HIS121
|
4.6
|
60.9
|
1.0
|
CBD
|
O:CLA201
|
4.9
|
61.5
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 7ku5
Go back to
Magnesium Binding Sites List in 7ku5
Magnesium binding site 2 out
of 3 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg202
b:49.8
occ:1.00
|
MG
|
O:CLA202
|
0.0
|
49.8
|
1.0
|
NB
|
O:CLA202
|
2.0
|
49.8
|
1.0
|
ND
|
O:CLA202
|
2.0
|
49.8
|
1.0
|
NC
|
O:CLA202
|
2.1
|
49.8
|
1.0
|
NA
|
O:CLA202
|
2.1
|
49.8
|
1.0
|
C4D
|
O:CLA202
|
2.9
|
49.8
|
1.0
|
C1B
|
O:CLA202
|
3.0
|
49.8
|
1.0
|
C4A
|
O:CLA202
|
3.1
|
49.8
|
1.0
|
C4B
|
O:CLA202
|
3.1
|
49.8
|
1.0
|
C1C
|
O:CLA202
|
3.1
|
49.8
|
1.0
|
C4C
|
O:CLA202
|
3.1
|
49.8
|
1.0
|
C1A
|
O:CLA202
|
3.2
|
49.8
|
1.0
|
C1D
|
O:CLA202
|
3.2
|
49.8
|
1.0
|
CHB
|
O:CLA202
|
3.4
|
49.8
|
1.0
|
CHC
|
O:CLA202
|
3.4
|
49.8
|
1.0
|
CHA
|
O:CLA202
|
3.5
|
49.8
|
1.0
|
CHD
|
O:CLA202
|
3.5
|
49.8
|
1.0
|
O
|
O:PHE130
|
4.2
|
50.2
|
1.0
|
C3D
|
O:CLA202
|
4.3
|
49.8
|
1.0
|
C2B
|
O:CLA202
|
4.3
|
49.8
|
1.0
|
C3B
|
O:CLA202
|
4.3
|
49.8
|
1.0
|
C2C
|
O:CLA202
|
4.3
|
49.8
|
1.0
|
C2D
|
O:CLA202
|
4.4
|
49.8
|
1.0
|
C3C
|
O:CLA202
|
4.4
|
49.8
|
1.0
|
C3A
|
O:CLA202
|
4.4
|
49.8
|
1.0
|
C2A
|
O:CLA202
|
4.5
|
49.8
|
1.0
|
C
|
O:PHE130
|
4.8
|
50.2
|
1.0
|
CA
|
O:GLY134
|
4.9
|
53.1
|
1.0
|
CBD
|
O:CLA202
|
4.9
|
49.8
|
1.0
|
CB
|
O:PHE130
|
5.0
|
50.2
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 7ku5
Go back to
Magnesium Binding Sites List in 7ku5
Magnesium binding site 3 out
of 3 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg203
b:74.1
occ:1.00
|
MG
|
O:CLA203
|
0.0
|
74.1
|
1.0
|
NB
|
O:CLA203
|
2.0
|
74.1
|
1.0
|
ND
|
O:CLA203
|
2.0
|
74.1
|
1.0
|
NC
|
O:CLA203
|
2.1
|
74.1
|
1.0
|
NA
|
O:CLA203
|
2.1
|
74.1
|
1.0
|
C4D
|
O:CLA203
|
2.9
|
74.1
|
1.0
|
C1B
|
O:CLA203
|
3.0
|
74.1
|
1.0
|
C4A
|
O:CLA203
|
3.1
|
74.1
|
1.0
|
C4B
|
O:CLA203
|
3.1
|
74.1
|
1.0
|
C1C
|
O:CLA203
|
3.1
|
74.1
|
1.0
|
C4C
|
O:CLA203
|
3.1
|
74.1
|
1.0
|
C1A
|
O:CLA203
|
3.1
|
74.1
|
1.0
|
C1D
|
O:CLA203
|
3.2
|
74.1
|
1.0
|
CHB
|
O:CLA203
|
3.4
|
74.1
|
1.0
|
CHC
|
O:CLA203
|
3.4
|
74.1
|
1.0
|
CHA
|
O:CLA203
|
3.5
|
74.1
|
1.0
|
CHD
|
O:CLA203
|
3.5
|
74.1
|
1.0
|
CG
|
O:PRO107
|
3.6
|
65.9
|
1.0
|
CB
|
O:PRO107
|
4.2
|
65.9
|
1.0
|
C3D
|
O:CLA203
|
4.3
|
74.1
|
1.0
|
C2B
|
O:CLA203
|
4.3
|
74.1
|
1.0
|
C3B
|
O:CLA203
|
4.3
|
74.1
|
1.0
|
C2C
|
O:CLA203
|
4.3
|
74.1
|
1.0
|
C2D
|
O:CLA203
|
4.4
|
74.1
|
1.0
|
C3C
|
O:CLA203
|
4.4
|
74.1
|
1.0
|
C3A
|
O:CLA203
|
4.4
|
74.1
|
1.0
|
C2A
|
O:CLA203
|
4.5
|
74.1
|
1.0
|
CD
|
O:PRO107
|
4.6
|
65.9
|
1.0
|
CBD
|
O:CLA203
|
4.9
|
74.1
|
1.0
|
|
Reference:
C.Gorski,
R.Riddle,
H.Toporik,
Z.Da,
Z.Dobson,
D.Williams,
Y.Mazor.
The Structure of the Physcomitrium Patens Photosystem I Reveals A Unique LHCA2 Paralogue Replacing LHCA4. Nat.Plants V. 8 307 2022.
ISSN: ESSN 2055-0278
PubMed: 35190662
DOI: 10.1038/S41477-022-01099-W
Page generated: Wed Oct 2 22:40:15 2024
|