Atomistry » Magnesium » PDB 7koc-7kum » 7ku7
Atomistry »
  Magnesium »
    PDB 7koc-7kum »
      7ku7 »

Magnesium in PDB 7ku7: Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.

Other elements in 7ku7:

The structure of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Chlorine (Cl) 2 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. (pdb code 7ku7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc., PDB code: 7ku7:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7ku7

Go back to Magnesium Binding Sites List in 7ku7
Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:154.0
occ:1.00
OAG J:ZZX401 1.9 147.9 1.0
OE2 A:GLU157 1.9 148.2 1.0
OAF J:ZZX401 1.9 147.9 1.0
OD2 A:ASP64 2.0 141.3 1.0
OE1 A:GLU157 2.3 148.2 1.0
CD A:GLU157 2.4 148.2 1.0
CAW J:ZZX401 2.7 147.9 1.0
CAZ J:ZZX401 2.7 147.9 1.0
CG A:ASP64 2.9 141.3 1.0
CBA J:ZZX401 3.0 147.9 1.0
MG A:MG303 3.0 153.4 1.0
OD1 A:ASP64 3.5 141.3 1.0
NBE J:ZZX401 3.8 147.9 1.0
CG A:GLU157 3.9 148.2 1.0
CAY J:ZZX401 3.9 147.9 1.0
CB A:ASP64 4.1 141.3 1.0
CB A:SER150 4.2 145.0 1.0
CBB J:ZZX401 4.2 147.9 1.0
CAN J:ZZX401 4.4 147.9 1.0
OG A:SER150 4.4 145.0 1.0
OAE J:ZZX401 4.5 147.9 1.0
CAS J:ZZX401 4.7 147.9 1.0
NBF J:ZZX401 4.7 147.9 1.0
CAL J:ZZX401 4.8 147.9 1.0
OP1 J:DA36 4.8 148.6 1.0
C8 J:DA36 4.8 148.6 1.0
CB A:GLU157 4.8 148.2 1.0
O A:PHE65 4.8 148.2 1.0
NAP J:ZZX401 4.9 147.9 1.0
N7 J:DA36 4.9 148.6 1.0
ND2 A:ASN160 5.0 144.3 1.0

Magnesium binding site 2 out of 4 in 7ku7

Go back to Magnesium Binding Sites List in 7ku7
Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:153.4
occ:1.00
OAE J:ZZX401 2.0 147.9 1.0
OAG J:ZZX401 2.0 147.9 1.0
OD1 A:ASP64 2.0 141.3 1.0
CAS J:ZZX401 2.4 147.9 1.0
CAW J:ZZX401 2.5 147.9 1.0
CAY J:ZZX401 2.6 147.9 1.0
OD2 A:ASP121 2.8 147.9 1.0
CG A:ASP64 2.8 141.3 1.0
OD2 A:ASP64 3.0 141.3 1.0
MG A:MG302 3.0 154.0 1.0
CG A:ASP121 3.5 147.9 1.0
NBD J:ZZX401 3.6 147.9 1.0
CBA J:ZZX401 3.6 147.9 1.0
OE2 A:GLU157 3.8 148.2 1.0
NBF J:ZZX401 3.9 147.9 1.0
OD1 A:ASP121 3.9 147.9 1.0
CAO J:ZZX401 4.0 147.9 1.0
OG A:SER150 4.1 145.0 1.0
CB A:ASP64 4.2 141.3 1.0
N7 J:DA36 4.3 148.6 1.0
OAF J:ZZX401 4.4 147.9 1.0
CBB J:ZZX401 4.4 147.9 1.0
CB A:ASP121 4.4 147.9 1.0
CAZ J:ZZX401 4.4 147.9 1.0
CAM J:ZZX401 4.6 147.9 1.0
CB A:SER150 4.8 145.0 1.0
CA A:ASP64 4.8 141.3 1.0
N A:PHE65 4.8 148.2 1.0
CD A:GLU157 4.9 148.2 1.0
C8 J:DA36 4.9 148.6 1.0
CBC J:ZZX401 5.0 147.9 1.0

Magnesium binding site 3 out of 4 in 7ku7

Go back to Magnesium Binding Sites List in 7ku7
Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg302

b:146.3
occ:1.00
OD1 E:ASP64 2.0 136.1 1.0
OD2 E:ASP121 2.1 141.7 1.0
OAE L:ZZX401 2.3 138.8 1.0
CG E:ASP121 2.5 141.7 1.0
OD1 E:ASP121 2.7 141.7 1.0
CG E:ASP64 3.0 136.1 1.0
CAS L:ZZX401 3.0 138.8 1.0
OAG L:ZZX401 3.2 138.8 1.0
OD2 E:ASP64 3.5 136.1 1.0
CAY L:ZZX401 3.5 138.8 1.0
CAW L:ZZX401 3.6 138.8 1.0
CB E:ASP121 3.6 141.7 1.0
NBD L:ZZX401 3.9 138.8 1.0
MG E:MG303 3.9 145.4 1.0
CB E:ASP64 4.1 136.1 1.0
OE2 E:GLU157 4.1 141.3 1.0
CAO L:ZZX401 4.5 138.8 1.0
CA E:ASP64 4.5 136.1 1.0
CAM L:ZZX401 4.5 138.8 1.0
N E:PHE65 4.7 137.4 1.0
NBF L:ZZX401 4.7 138.8 1.0
CBA L:ZZX401 4.8 138.8 1.0
CA E:ASP121 5.0 141.7 1.0

Magnesium binding site 4 out of 4 in 7ku7

Go back to Magnesium Binding Sites List in 7ku7
Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg303

b:145.4
occ:1.00
OAG L:ZZX401 1.9 138.8 1.0
OE2 E:GLU157 2.0 141.3 1.0
OD2 E:ASP64 2.0 136.1 1.0
OE1 E:GLU157 2.1 141.3 1.0
OAF L:ZZX401 2.1 138.8 1.0
CD E:GLU157 2.3 141.3 1.0
CAW L:ZZX401 2.8 138.8 1.0
CAZ L:ZZX401 2.9 138.8 1.0
CG E:ASP64 3.0 136.1 1.0
CBA L:ZZX401 3.2 138.8 1.0
OD1 E:ASP64 3.6 136.1 1.0
CG E:GLU157 3.8 141.3 1.0
MG E:MG302 3.9 146.3 1.0
CAY L:ZZX401 4.0 138.8 1.0
NBE L:ZZX401 4.1 138.8 1.0
CB E:ASP64 4.2 136.1 1.0
OAE L:ZZX401 4.5 138.8 1.0
CBB L:ZZX401 4.5 138.8 1.0
CB E:SER150 4.5 138.5 1.0
CAN L:ZZX401 4.6 138.8 1.0
CB E:GLU157 4.6 141.3 1.0
ND2 E:ASN160 4.7 133.6 1.0
CAS L:ZZX401 4.7 138.8 1.0
O E:PHE65 4.8 137.4 1.0
O3' L:DC35 4.8 145.2 1.0
CAL L:ZZX401 4.8 138.8 1.0
NBF L:ZZX401 4.9 138.8 1.0
C2' L:DC35 4.9 145.2 1.0
OG E:SER150 5.0 138.5 1.0

Reference:

K.K.Pandey, S.Bera, K.Shi, H.Aihara, D.P.Grandgenett, M.J.Rau, A.V.Oleru, J.A.J.Fitzpatrick, A.N.Engelman. Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 Commun Biol 2021.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-021-01855-2
Page generated: Wed Oct 2 22:40:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy