Magnesium in PDB 7kyc: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State

Enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State:
7.6.2.1;

Other elements in 7kyc:

The structure of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State (pdb code 7kyc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State, PDB code: 7kyc:

Magnesium binding site 1 out of 1 in 7kyc

Go back to Magnesium Binding Sites List in 7kyc
Magnesium binding site 1 out of 1 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1602

b:30.0
occ:1.00
F2 A:BEF1601 2.1 20.0 1.0
OD1 A:ASP667 2.1 25.8 1.0
O A:THR669 2.1 31.9 1.0
OD1 A:ASP1130 2.2 32.9 1.0
O A:ASP1130 2.7 32.9 1.0
CG A:ASP667 3.3 25.8 1.0
CG A:ASP1130 3.3 32.9 1.0
C A:THR669 3.4 31.9 1.0
BE A:BEF1601 3.5 20.0 1.0
C A:ASP1130 3.8 32.9 1.0
OD2 A:ASP667 3.8 25.8 1.0
O A:LYS436 3.9 38.1 1.0
OD2 A:ASP1130 3.9 32.9 1.0
OD2 A:ASP1134 4.2 28.4 1.0
N A:ASP1130 4.2 32.9 1.0
N A:GLY670 4.3 27.3 1.0
CA A:THR669 4.3 31.9 1.0
CA A:GLY670 4.3 27.3 1.0
CG2 A:THR671 4.4 25.9 1.0
CA A:ASP1130 4.4 32.9 1.0
F1 A:BEF1601 4.4 20.0 1.0
CB A:THR669 4.4 31.9 1.0
CB A:ASP1130 4.4 32.9 1.0
CB A:ASP667 4.5 25.8 1.0
F3 A:BEF1601 4.5 20.0 1.0
N A:THR669 4.6 31.9 1.0
CG2 A:THR669 4.7 31.9 1.0
ND2 A:ASN1133 4.7 31.3 1.0
O A:ASP439 4.8 42.5 1.0
C A:GLY670 4.8 27.3 1.0
N A:GLY1131 4.8 31.6 1.0
N A:THR671 5.0 25.9 1.0
CA A:GLY1131 5.0 31.6 1.0

Reference:

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163
Page generated: Mon Jan 25 15:28:57 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy