Magnesium in PDB 7lg5: Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp

Enzymatic activity of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp

All present enzymatic activity of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp:
6.3.2.29; 6.3.2.30;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp (pdb code 7lg5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp, PDB code: 7lg5:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 7lg5

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Magnesium binding site 1 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:30.0
occ:1.00
 OE1 A:GLU558 1.8 82.0 1.0
OG1 A:THR500 2.0 59.8 1.0
O1B A:ATP901 2.2 58.1 1.0
O1G A:ATP901 2.5 56.8 1.0
CD A:GLU558 2.7 86.6 1.0
OE2 A:GLU558 2.9 107.4 1.0
OG1 A:THR522 3.0 104.0 1.0
CG2 A:THR522 3.3 105.4 1.0
CB A:THR500 3.4 52.0 1.0
PB A:ATP901 3.5 45.9 1.0
CB A:THR522 3.7 90.2 1.0
PG A:ATP901 3.8 54.0 1.0
N A:THR500 3.8 41.6 1.0
O3B A:ATP901 3.9 61.0 1.0
CA A:THR500 4.0 47.4 1.0
CG A:GLU558 4.2 59.5 1.0
N A:THR522 4.4 65.2 1.0
CG2 A:THR500 4.4 52.6 1.0
O2B A:ATP901 4.4 50.2 1.0
CB A:LYS499 4.5 38.9 1.0
O3A A:ATP901 4.6 50.8 1.0
CA A:THR522 4.6 83.4 1.0
O2G A:ATP901 4.7 63.5 1.0
O1A A:ATP901 4.7 58.4 1.0
CE A:LYS499 4.7 32.4 1.0
C A:LYS499 4.8 41.9 1.0
O3G A:ATP901 4.8 67.1 1.0

Magnesium binding site 2 out of 12 in 7lg5

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Magnesium binding site 2 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg904

b:30.0
occ:1.00
 O3G A:ATP901 2.5 67.1 1.0
NE2 A:HIS586 2.9 163.2 1.0
CD2 A:HIS586 3.5 156.7 1.0
OD2 A:ASP585 3.8 114.7 1.0
PG A:ATP901 4.0 54.0 1.0
CE1 A:HIS586 4.1 161.0 1.0
O A:THR496 4.2 42.2 1.0
NZ A:LYS499 4.5 29.5 1.0
O3B A:ATP901 4.6 61.0 1.0
O2G A:ATP901 4.7 63.5 1.0
CG A:ASP585 4.7 122.8 1.0
CG A:HIS586 4.7 148.0 1.0
CD2 A:HIS748 4.9 212.0 1.0
O1G A:ATP901 4.9 56.8 1.0
NE2 A:HIS748 4.9 222.8 1.0
ND1 A:HIS586 5.0 140.0 1.0

Magnesium binding site 3 out of 12 in 7lg5

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Magnesium binding site 3 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg905

b:30.0
occ:1.00
 O1G A:ATP902 2.3 183.8 1.0
OD2 A:ASP431 2.6 84.7 1.0
OE1 A:GLU450 2.7 132.9 1.0
O5' A:ATP902 3.6 141.0 1.0
O3' A:ATP902 3.7 104.0 1.0
PG A:ATP902 3.7 179.2 1.0
CD A:GLU450 3.8 133.0 1.0
CG A:ASP431 3.8 84.4 1.0
O3A A:ATP902 3.9 153.4 1.0
OE2 A:GLU450 4.3 144.4 1.0
O2G A:ATP902 4.3 192.8 1.0
PA A:ATP902 4.4 142.2 1.0
OD1 A:ASP431 4.4 95.2 1.0
C3' A:ATP902 4.4 111.6 1.0
O3B A:ATP902 4.5 172.9 1.0
O1B A:ATP902 4.6 164.7 1.0
OD1 A:ASN452 4.6 71.6 1.0
PB A:ATP902 4.7 164.6 1.0
O3G A:ATP902 4.7 188.3 1.0
O1A A:ATP902 4.7 141.4 1.0
C5' A:ATP902 4.7 131.0 1.0
CB A:GLU450 4.8 67.8 1.0
CB A:ASP431 4.8 48.2 1.0
CG A:GLU450 4.8 95.2 1.0
NH2 A:ARG323 4.9 147.1 1.0

Magnesium binding site 4 out of 12 in 7lg5

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Magnesium binding site 4 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:30.0
occ:1.00
 OE1 B:GLU558 1.8 82.0 1.0
OG1 B:THR500 2.0 59.8 1.0
O1B B:ATP901 2.2 58.1 1.0
O1G B:ATP901 2.5 56.8 1.0
CD B:GLU558 2.7 86.6 1.0
OE2 B:GLU558 2.9 107.4 1.0
OG1 B:THR522 3.0 104.0 1.0
CG2 B:THR522 3.3 105.4 1.0
CB B:THR500 3.4 52.0 1.0
PB B:ATP901 3.5 45.9 1.0
CB B:THR522 3.7 90.2 1.0
PG B:ATP901 3.8 54.0 1.0
N B:THR500 3.8 41.6 1.0
O3B B:ATP901 3.9 61.0 1.0
CA B:THR500 4.0 47.4 1.0
CG B:GLU558 4.2 59.5 1.0
N B:THR522 4.4 65.2 1.0
CG2 B:THR500 4.4 52.6 1.0
O2B B:ATP901 4.4 50.2 1.0
CB B:LYS499 4.5 38.9 1.0
O3A B:ATP901 4.6 50.8 1.0
CA B:THR522 4.6 83.4 1.0
O2G B:ATP901 4.7 63.5 1.0
O1A B:ATP901 4.7 58.4 1.0
CE B:LYS499 4.7 32.4 1.0
C B:LYS499 4.8 41.9 1.0
O3G B:ATP901 4.8 67.1 1.0

Magnesium binding site 5 out of 12 in 7lg5

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Magnesium binding site 5 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg904

b:30.0
occ:1.00
 O3G B:ATP901 2.5 67.1 1.0
NE2 B:HIS586 2.9 163.2 1.0
CD2 B:HIS586 3.5 156.7 1.0
OD2 B:ASP585 3.8 114.7 1.0
PG B:ATP901 4.0 54.0 1.0
CE1 B:HIS586 4.1 161.0 1.0
O B:THR496 4.2 42.2 1.0
NZ B:LYS499 4.5 29.5 1.0
O3B B:ATP901 4.6 61.0 1.0
O2G B:ATP901 4.7 63.5 1.0
CG B:ASP585 4.7 122.8 1.0
CG B:HIS586 4.7 148.0 1.0
CD2 B:HIS748 4.9 212.0 1.0
O1G B:ATP901 4.9 56.8 1.0
NE2 B:HIS748 4.9 222.8 1.0
ND1 B:HIS586 5.0 140.0 1.0

Magnesium binding site 6 out of 12 in 7lg5

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Magnesium binding site 6 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg905

b:30.0
occ:1.00
 O1G B:ATP902 2.3 183.8 1.0
OD2 B:ASP431 2.6 84.7 1.0
OE1 B:GLU450 2.7 132.9 1.0
O5' B:ATP902 3.6 141.0 1.0
O3' B:ATP902 3.7 104.0 1.0
PG B:ATP902 3.7 179.2 1.0
CD B:GLU450 3.8 133.0 1.0
CG B:ASP431 3.8 84.4 1.0
O3A B:ATP902 3.9 153.4 1.0
OE2 B:GLU450 4.3 144.4 1.0
O2G B:ATP902 4.3 192.8 1.0
PA B:ATP902 4.4 142.2 1.0
OD1 B:ASP431 4.4 95.2 1.0
C3' B:ATP902 4.4 111.6 1.0
O3B B:ATP902 4.5 172.9 1.0
O1B B:ATP902 4.6 164.7 1.0
OD1 B:ASN452 4.6 71.6 1.0
PB B:ATP902 4.7 164.6 1.0
O3G B:ATP902 4.7 188.3 1.0
O1A B:ATP902 4.7 141.4 1.0
C5' B:ATP902 4.7 131.0 1.0
CB B:GLU450 4.8 67.8 1.0
CB B:ASP431 4.8 48.2 1.0
CG B:GLU450 4.8 95.2 1.0
NH2 B:ARG323 4.9 147.1 1.0

Magnesium binding site 7 out of 12 in 7lg5

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Magnesium binding site 7 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg903

b:30.0
occ:1.00
 OE1 C:GLU558 1.8 82.0 1.0
OG1 C:THR500 2.0 59.8 1.0
O1B C:ATP901 2.2 58.1 1.0
O1G C:ATP901 2.5 56.8 1.0
CD C:GLU558 2.7 86.6 1.0
OE2 C:GLU558 2.9 107.4 1.0
OG1 C:THR522 3.0 104.0 1.0
CG2 C:THR522 3.3 105.4 1.0
CB C:THR500 3.4 52.0 1.0
PB C:ATP901 3.5 45.9 1.0
CB C:THR522 3.7 90.2 1.0
PG C:ATP901 3.8 54.0 1.0
N C:THR500 3.8 41.6 1.0
O3B C:ATP901 3.9 61.0 1.0
CA C:THR500 4.0 47.4 1.0
CG C:GLU558 4.2 59.5 1.0
N C:THR522 4.4 65.2 1.0
CG2 C:THR500 4.4 52.6 1.0
O2B C:ATP901 4.4 50.2 1.0
CB C:LYS499 4.5 38.9 1.0
O3A C:ATP901 4.6 50.8 1.0
CA C:THR522 4.6 83.4 1.0
O2G C:ATP901 4.7 63.5 1.0
O1A C:ATP901 4.7 58.4 1.0
CE C:LYS499 4.7 32.4 1.0
C C:LYS499 4.8 41.9 1.0
O3G C:ATP901 4.8 67.1 1.0

Magnesium binding site 8 out of 12 in 7lg5

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Magnesium binding site 8 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg904

b:30.0
occ:1.00
 O3G C:ATP901 2.5 67.1 1.0
NE2 C:HIS586 2.9 163.2 1.0
CD2 C:HIS586 3.5 156.7 1.0
OD2 C:ASP585 3.8 114.7 1.0
PG C:ATP901 4.0 54.0 1.0
CE1 C:HIS586 4.1 161.0 1.0
O C:THR496 4.2 42.2 1.0
NZ C:LYS499 4.5 29.5 1.0
O3B C:ATP901 4.6 61.0 1.0
O2G C:ATP901 4.7 63.5 1.0
CG C:ASP585 4.7 122.8 1.0
CG C:HIS586 4.7 148.0 1.0
CD2 C:HIS748 4.9 212.0 1.0
O1G C:ATP901 4.9 56.8 1.0
NE2 C:HIS748 4.9 222.8 1.0
ND1 C:HIS586 5.0 140.0 1.0

Magnesium binding site 9 out of 12 in 7lg5

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Magnesium binding site 9 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg905

b:30.0
occ:1.00
 O1G C:ATP902 2.3 183.8 1.0
OD2 C:ASP431 2.6 84.7 1.0
OE1 C:GLU450 2.7 132.9 1.0
O5' C:ATP902 3.6 141.0 1.0
O3' C:ATP902 3.7 104.0 1.0
PG C:ATP902 3.7 179.2 1.0
CD C:GLU450 3.8 133.0 1.0
CG C:ASP431 3.8 84.4 1.0
O3A C:ATP902 3.9 153.4 1.0
OE2 C:GLU450 4.3 144.4 1.0
O2G C:ATP902 4.3 192.8 1.0
PA C:ATP902 4.4 142.2 1.0
OD1 C:ASP431 4.4 95.2 1.0
C3' C:ATP902 4.4 111.6 1.0
O3B C:ATP902 4.5 172.9 1.0
O1B C:ATP902 4.6 164.7 1.0
OD1 C:ASN452 4.6 71.6 1.0
PB C:ATP902 4.7 164.6 1.0
O3G C:ATP902 4.7 188.3 1.0
O1A C:ATP902 4.7 141.4 1.0
C5' C:ATP902 4.7 131.0 1.0
CB C:GLU450 4.8 67.8 1.0
CB C:ASP431 4.8 48.2 1.0
CG C:GLU450 4.9 95.2 1.0
NH2 C:ARG323 4.9 147.1 1.0

Magnesium binding site 10 out of 12 in 7lg5

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Magnesium binding site 10 out of 12 in the Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Synechocystis Sp. UTEX2470 Cyanophycin Synthetase 1 with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg903

b:30.0
occ:1.00
 OE1 D:GLU558 1.8 82.0 1.0
OG1 D:THR500 2.0 59.8 1.0
O1B D:ATP901 2.2 58.1 1.0
O1G D:ATP901 2.5 56.8 1.0
CD D:GLU558 2.7 86.6 1.0
OE2 D:GLU558 2.9 107.4 1.0
OG1 D:THR522 3.0 104.0 1.0
CG2 D:THR522 3.3 105.4 1.0
CB D:THR500 3.4 52.0 1.0
PB D:ATP901 3.5 45.9 1.0
CB D:THR522 3.7 90.2 1.0
PG D:ATP901 3.8 54.0 1.0
N D:THR500 3.8 41.6 1.0
O3B D:ATP901 3.9 61.0 1.0
CA D:THR500 4.0 47.4 1.0
CG D:GLU558 4.2 59.5 1.0
N D:THR522 4.4 65.2 1.0
CG2 D:THR500 4.4 52.6 1.0
O2B D:ATP901 4.4 50.2 1.0
CB D:LYS499 4.5 38.9 1.0
O3A D:ATP901 4.6 50.8 1.0
CA D:THR522 4.6 83.4 1.0
O2G D:ATP901 4.7 63.5 1.0
O1A D:ATP901 4.7 58.4 1.0
CE D:LYS499 4.7 32.4 1.0
C D:LYS499 4.8 41.9 1.0
O3G D:ATP901 4.8 67.1 1.0

Reference:

I.Sharon, T.M.Schmeing. Structures and Functions of Cyanophycin Synthetase, A Common Amino Acid Polymerase. To Be Published.
Page generated: Wed Oct 2 23:21:45 2024

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