Magnesium in PDB 7lgj: Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2

Enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2

All present enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2:
6.3.2.29; 6.3.2.30;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 (pdb code 7lgj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2, PDB code: 7lgj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 7lgj

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Magnesium binding site 1 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:30.0
occ:1.00
 O2G A:ACP904 2.4 0.5 1.0
NE2 A:HIS586 2.8 163.2 1.0
CD2 A:HIS586 3.4 156.7 1.0
CE1 A:HIS586 3.8 161.0 1.0
PG A:ACP904 3.9 0.5 1.0
H3B1 A:ACP904 4.1 0.5 1.0
OD2 A:ASP585 4.2 114.7 1.0
O A:THR496 4.4 42.2 1.0
NZ A:LYS499 4.6 29.5 1.0
CG A:HIS586 4.6 148.0 1.0
O3G A:ACP904 4.6 0.5 1.0
C3B A:ACP904 4.6 0.5 1.0
O1G A:ACP904 4.7 0.5 1.0
ND1 A:HIS586 4.8 140.0 1.0
CG A:ASP585 5.0 122.8 1.0

Magnesium binding site 2 out of 12 in 7lgj

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Magnesium binding site 2 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:30.0
occ:1.00
 OG1 A:THR500 2.1 59.8 1.0
O1B A:ACP904 2.1 0.5 1.0
O1G A:ACP904 2.4 0.5 1.0
OE1 A:GLU558 2.4 82.0 1.0
OG1 A:THR522 2.8 104.0 1.0
CD A:GLU558 3.3 86.6 1.0
CG2 A:THR522 3.3 105.4 1.0
CB A:THR500 3.4 52.0 1.0
OE2 A:GLU558 3.4 107.4 1.0
PB A:ACP904 3.4 0.5 1.0
PG A:ACP904 3.5 0.5 1.0
CB A:THR522 3.6 90.2 1.0
C3B A:ACP904 3.8 0.5 1.0
O3G A:ACP904 3.9 0.5 1.0
H3B2 A:ACP904 4.1 0.5 1.0
N A:THR500 4.1 41.6 1.0
CA A:THR500 4.3 47.4 1.0
O1A A:ACP904 4.3 0.5 1.0
O3A A:ACP904 4.3 0.5 1.0
CG2 A:THR500 4.4 52.6 1.0
O2B A:ACP904 4.4 0.5 1.0
N A:THR522 4.6 65.2 1.0
CA A:THR522 4.7 83.4 1.0
O2G A:ACP904 4.7 0.5 1.0
H3B1 A:ACP904 4.7 0.5 1.0
PA A:ACP904 4.8 0.5 1.0
NH2 A:ARG731 4.8 156.7 1.0
CG A:GLU558 4.9 59.5 1.0
CB A:LYS499 4.9 38.9 1.0
CE A:LYS499 5.0 32.4 1.0

Magnesium binding site 3 out of 12 in 7lgj

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Magnesium binding site 3 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:30.0
occ:1.00
 H3B1 A:ACP905 2.3 0.5 1.0
OD2 A:ASP431 2.5 84.7 1.0
OE1 A:GLU450 2.8 132.9 1.0
HO3' A:ACP905 3.2 0.5 1.0
C3B A:ACP905 3.3 0.5 1.0
H5'1 A:ACP905 3.3 0.5 1.0
H3B2 A:ACP905 3.5 0.5 1.0
CG A:ASP431 3.7 84.4 1.0
O3G A:ACP905 3.8 0.5 1.0
CD A:GLU450 3.9 133.0 1.0
O3' A:ACP905 4.0 0.5 1.0
O1A A:ACP905 4.1 0.5 1.0
PG A:ACP905 4.2 0.5 1.0
C5' A:ACP905 4.3 0.5 1.0
H3' A:ACP905 4.4 0.5 1.0
OE2 A:GLU450 4.4 144.4 1.0
PB A:ACP905 4.4 0.5 1.0
NH2 A:ARG323 4.4 147.1 1.0
OD1 A:ASP431 4.4 95.2 1.0
O3A A:ACP905 4.5 0.5 1.0
O2B A:ACP905 4.5 0.5 1.0
O2G A:ACP905 4.6 0.5 1.0
C3' A:ACP905 4.6 0.5 1.0
H5'2 A:ACP905 4.6 0.5 1.0
OD1 A:ASN452 4.7 71.6 1.0
CB A:ASP431 4.7 48.2 1.0
CB A:GLU450 4.9 67.8 1.0
PA A:ACP905 4.9 0.5 1.0
CG A:GLU450 5.0 95.2 1.0
NH2 A:ARG309 5.0 65.4 1.0
C4' A:ACP905 5.0 0.5 1.0

Magnesium binding site 4 out of 12 in 7lgj

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Magnesium binding site 4 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg901

b:30.0
occ:1.00
 O2G B:ACP904 2.4 0.5 1.0
NE2 B:HIS586 2.8 163.2 1.0
CD2 B:HIS586 3.4 156.7 1.0
CE1 B:HIS586 3.8 161.0 1.0
PG B:ACP904 3.9 0.5 1.0
H3B1 B:ACP904 4.1 0.5 1.0
OD2 B:ASP585 4.2 114.7 1.0
O B:THR496 4.4 42.2 1.0
CG B:HIS586 4.6 148.0 1.0
NZ B:LYS499 4.6 29.5 1.0
O3G B:ACP904 4.6 0.5 1.0
C3B B:ACP904 4.6 0.5 1.0
O1G B:ACP904 4.7 0.5 1.0
ND1 B:HIS586 4.8 140.0 1.0
CG B:ASP585 5.0 122.8 1.0

Magnesium binding site 5 out of 12 in 7lgj

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Magnesium binding site 5 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:30.0
occ:1.00
 OG1 B:THR500 2.1 59.8 1.0
O1B B:ACP904 2.1 0.5 1.0
O1G B:ACP904 2.4 0.5 1.0
OE1 B:GLU558 2.4 82.0 1.0
OG1 B:THR522 2.8 104.0 1.0
CD B:GLU558 3.3 86.6 1.0
CG2 B:THR522 3.3 105.4 1.0
CB B:THR500 3.4 52.0 1.0
OE2 B:GLU558 3.4 107.4 1.0
PB B:ACP904 3.4 0.5 1.0
PG B:ACP904 3.5 0.5 1.0
CB B:THR522 3.6 90.2 1.0
C3B B:ACP904 3.8 0.5 1.0
O3G B:ACP904 3.9 0.5 1.0
H3B2 B:ACP904 4.1 0.5 1.0
N B:THR500 4.1 41.6 1.0
CA B:THR500 4.3 47.4 1.0
O1A B:ACP904 4.3 0.5 1.0
O3A B:ACP904 4.3 0.5 1.0
CG2 B:THR500 4.4 52.6 1.0
O2B B:ACP904 4.4 0.5 1.0
N B:THR522 4.6 65.2 1.0
CA B:THR522 4.7 83.4 1.0
O2G B:ACP904 4.7 0.5 1.0
H3B1 B:ACP904 4.7 0.5 1.0
PA B:ACP904 4.8 0.5 1.0
NH2 B:ARG731 4.8 156.7 1.0
CG B:GLU558 4.9 59.5 1.0
CB B:LYS499 4.9 38.9 1.0
CE B:LYS499 5.0 32.4 1.0

Magnesium binding site 6 out of 12 in 7lgj

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Magnesium binding site 6 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:30.0
occ:1.00
 H3B1 B:ACP905 2.3 0.5 1.0
OD2 B:ASP431 2.5 84.7 1.0
OE1 B:GLU450 2.8 132.9 1.0
HO3' B:ACP905 3.2 0.5 1.0
C3B B:ACP905 3.3 0.5 1.0
H5'1 B:ACP905 3.3 0.5 1.0
H3B2 B:ACP905 3.5 0.5 1.0
CG B:ASP431 3.7 84.4 1.0
O3G B:ACP905 3.8 0.5 1.0
CD B:GLU450 3.9 133.0 1.0
O3' B:ACP905 4.0 0.5 1.0
O1A B:ACP905 4.1 0.5 1.0
PG B:ACP905 4.2 0.5 1.0
C5' B:ACP905 4.3 0.5 1.0
H3' B:ACP905 4.4 0.5 1.0
OE2 B:GLU450 4.4 144.4 1.0
PB B:ACP905 4.4 0.5 1.0
NH2 B:ARG323 4.4 147.1 1.0
OD1 B:ASP431 4.4 95.2 1.0
O3A B:ACP905 4.5 0.5 1.0
O2B B:ACP905 4.5 0.5 1.0
O2G B:ACP905 4.6 0.5 1.0
C3' B:ACP905 4.6 0.5 1.0
H5'2 B:ACP905 4.6 0.5 1.0
OD1 B:ASN452 4.7 71.6 1.0
CB B:ASP431 4.7 48.2 1.0
CB B:GLU450 4.9 67.8 1.0
PA B:ACP905 4.9 0.5 1.0
CG B:GLU450 5.0 95.2 1.0
NH2 B:ARG309 5.0 65.4 1.0
C4' B:ACP905 5.0 0.5 1.0

Magnesium binding site 7 out of 12 in 7lgj

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Magnesium binding site 7 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg901

b:30.0
occ:1.00
 O2G C:ACP904 2.4 0.5 1.0
NE2 C:HIS586 2.8 163.2 1.0
CD2 C:HIS586 3.4 156.7 1.0
CE1 C:HIS586 3.8 161.0 1.0
PG C:ACP904 3.9 0.5 1.0
H3B1 C:ACP904 4.1 0.5 1.0
OD2 C:ASP585 4.2 114.7 1.0
O C:THR496 4.4 42.2 1.0
NZ C:LYS499 4.6 29.5 1.0
CG C:HIS586 4.6 148.0 1.0
O3G C:ACP904 4.6 0.5 1.0
C3B C:ACP904 4.6 0.5 1.0
O1G C:ACP904 4.7 0.5 1.0
ND1 C:HIS586 4.8 140.0 1.0
CG C:ASP585 5.0 122.8 1.0

Magnesium binding site 8 out of 12 in 7lgj

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Magnesium binding site 8 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg902

b:30.0
occ:1.00
 OG1 C:THR500 2.1 59.8 1.0
O1B C:ACP904 2.1 0.5 1.0
O1G C:ACP904 2.4 0.5 1.0
OE1 C:GLU558 2.4 82.0 1.0
OG1 C:THR522 2.8 104.0 1.0
CD C:GLU558 3.3 86.6 1.0
CG2 C:THR522 3.3 105.4 1.0
CB C:THR500 3.4 52.0 1.0
OE2 C:GLU558 3.4 107.4 1.0
PB C:ACP904 3.4 0.5 1.0
PG C:ACP904 3.5 0.5 1.0
CB C:THR522 3.6 90.2 1.0
C3B C:ACP904 3.8 0.5 1.0
O3G C:ACP904 3.9 0.5 1.0
H3B2 C:ACP904 4.1 0.5 1.0
N C:THR500 4.1 41.6 1.0
CA C:THR500 4.3 47.4 1.0
O1A C:ACP904 4.3 0.5 1.0
O3A C:ACP904 4.3 0.5 1.0
CG2 C:THR500 4.4 52.6 1.0
O2B C:ACP904 4.4 0.5 1.0
N C:THR522 4.6 65.2 1.0
O2G C:ACP904 4.7 0.5 1.0
CA C:THR522 4.7 83.4 1.0
H3B1 C:ACP904 4.7 0.5 1.0
PA C:ACP904 4.8 0.5 1.0
NH2 C:ARG731 4.8 156.7 1.0
CG C:GLU558 4.9 59.5 1.0
CB C:LYS499 4.9 38.9 1.0
CE C:LYS499 5.0 32.4 1.0

Magnesium binding site 9 out of 12 in 7lgj

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Magnesium binding site 9 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg903

b:30.0
occ:1.00
 H3B1 C:ACP905 2.3 0.5 1.0
OD2 C:ASP431 2.5 84.7 1.0
OE1 C:GLU450 2.8 132.9 1.0
HO3' C:ACP905 3.2 0.5 1.0
C3B C:ACP905 3.3 0.5 1.0
H5'1 C:ACP905 3.3 0.5 1.0
H3B2 C:ACP905 3.5 0.5 1.0
CG C:ASP431 3.7 84.4 1.0
O3G C:ACP905 3.8 0.5 1.0
CD C:GLU450 3.9 133.0 1.0
O3' C:ACP905 4.0 0.5 1.0
O1A C:ACP905 4.1 0.5 1.0
PG C:ACP905 4.2 0.5 1.0
C5' C:ACP905 4.3 0.5 1.0
H3' C:ACP905 4.4 0.5 1.0
OE2 C:GLU450 4.4 144.4 1.0
PB C:ACP905 4.4 0.5 1.0
NH2 C:ARG323 4.4 147.1 1.0
OD1 C:ASP431 4.4 95.2 1.0
O3A C:ACP905 4.5 0.5 1.0
O2B C:ACP905 4.5 0.5 1.0
O2G C:ACP905 4.6 0.5 1.0
C3' C:ACP905 4.6 0.5 1.0
H5'2 C:ACP905 4.6 0.5 1.0
OD1 C:ASN452 4.7 71.6 1.0
CB C:ASP431 4.7 48.2 1.0
CB C:GLU450 4.9 67.8 1.0
PA C:ACP905 4.9 0.5 1.0
CG C:GLU450 5.0 95.2 1.0
NH2 C:ARG309 5.0 65.4 1.0
C4' C:ACP905 5.0 0.5 1.0

Magnesium binding site 10 out of 12 in 7lgj

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Magnesium binding site 10 out of 12 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Adpcp and 8X(Asp-Arg)-NH2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg901

b:30.0
occ:1.00
 O2G D:ACP904 2.4 0.5 1.0
NE2 D:HIS586 2.8 163.2 1.0
CD2 D:HIS586 3.4 156.7 1.0
CE1 D:HIS586 3.8 161.0 1.0
PG D:ACP904 3.9 0.5 1.0
H3B1 D:ACP904 4.1 0.5 1.0
OD2 D:ASP585 4.2 114.7 1.0
O D:THR496 4.4 42.2 1.0
NZ D:LYS499 4.6 29.5 1.0
CG D:HIS586 4.6 148.0 1.0
O3G D:ACP904 4.6 0.5 1.0
C3B D:ACP904 4.6 0.5 1.0
O1G D:ACP904 4.7 0.5 1.0
ND1 D:HIS586 4.8 140.0 1.0
CG D:ASP585 5.0 122.8 1.0

Reference:

I.Sharon, T.M.Schmeing. Structures and Functions of Cyanophycin Synthetase, A Common Amino Acid Polymerase To Be Published.
Page generated: Wed Oct 2 23:22:01 2024

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