Magnesium in PDB 7lgq: Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn

Enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn

All present enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn:
6.3.2.29; 6.3.2.30;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn (pdb code 7lgq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn, PDB code: 7lgq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7lgq

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Magnesium binding site 1 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:30.0
occ:1.00
 OE1 A:GLU558 1.8 82.0 1.0
OG1 A:THR500 2.0 59.8 1.0
CD A:GLU558 2.8 86.6 1.0
OE2 A:GLU558 3.0 107.4 1.0
O3B A:ATP901 3.0 61.0 1.0
O1B A:ATP901 3.0 58.1 1.0
OG1 A:THR522 3.1 104.0 1.0
CG2 A:THR522 3.3 105.4 1.0
CB A:THR500 3.4 52.0 1.0
O3G A:ATP901 3.6 67.1 1.0
PB A:ATP901 3.7 45.9 1.0
CB A:THR522 3.7 90.2 1.0
PG A:ATP901 3.8 54.0 1.0
O1G A:ATP901 3.8 56.8 1.0
N A:THR500 3.9 41.6 1.0
CA A:THR500 4.1 47.4 1.0
CG A:GLU558 4.3 59.5 1.0
O1A A:ATP901 4.3 58.4 1.0
N A:THR522 4.4 65.2 1.0
CG2 A:THR500 4.4 52.6 1.0
CB A:LYS499 4.6 38.9 1.0
O3A A:ATP901 4.6 50.8 1.0
CA A:THR522 4.7 83.4 1.0
CE A:LYS499 4.7 32.4 1.0
O2B A:ATP901 4.7 50.2 1.0
C A:LYS499 4.9 41.9 1.0

Magnesium binding site 2 out of 8 in 7lgq

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Magnesium binding site 2 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg904

b:30.0
occ:1.00
 O2G A:ATP901 3.0 63.5 1.0
NE2 A:HIS586 3.0 163.2 1.0
O3G A:ATP901 3.1 67.1 1.0
OD1 J:ASN9 3.2 20.0 1.0
PG A:ATP901 3.6 54.0 1.0
CD2 A:HIS586 3.6 156.7 1.0
CE1 A:HIS586 4.0 161.0 1.0
CG J:ASN9 4.1 20.0 1.0
O J:ASN9 4.2 20.0 1.0
NZ A:LYS499 4.4 29.5 1.0
OD2 A:ASP585 4.4 114.7 1.0
O A:THR496 4.5 42.2 1.0
O1G A:ATP901 4.6 56.8 1.0
C J:ASN9 4.6 20.0 1.0
HA J:ASN9 4.7 20.0 1.0
HD21 J:ASN9 4.7 20.0 1.0
CG A:HIS586 4.8 148.0 1.0
O3B A:ATP901 4.8 61.0 1.0
ND2 J:ASN9 4.9 20.0 1.0
ND1 A:HIS586 5.0 140.0 1.0
O2B A:ATP901 5.0 50.2 1.0

Magnesium binding site 3 out of 8 in 7lgq

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Magnesium binding site 3 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:30.0
occ:1.00
 OE1 B:GLU558 1.8 82.0 1.0
OG1 B:THR500 2.0 59.8 1.0
CD B:GLU558 2.8 86.6 1.0
OE2 B:GLU558 3.0 107.4 1.0
O3B B:ATP901 3.0 61.0 1.0
O1B B:ATP901 3.0 58.1 1.0
OG1 B:THR522 3.1 104.0 1.0
CG2 B:THR522 3.3 105.4 1.0
CB B:THR500 3.4 52.0 1.0
O3G B:ATP901 3.6 67.1 1.0
PB B:ATP901 3.7 45.9 1.0
CB B:THR522 3.7 90.2 1.0
PG B:ATP901 3.8 54.0 1.0
O1G B:ATP901 3.8 56.8 1.0
N B:THR500 3.9 41.6 1.0
CA B:THR500 4.1 47.4 1.0
CG B:GLU558 4.3 59.5 1.0
O1A B:ATP901 4.3 58.4 1.0
N B:THR522 4.4 65.2 1.0
CG2 B:THR500 4.4 52.6 1.0
CB B:LYS499 4.6 38.9 1.0
O3A B:ATP901 4.6 50.8 1.0
CA B:THR522 4.7 83.4 1.0
CE B:LYS499 4.7 32.4 1.0
O2B B:ATP901 4.7 50.2 1.0
C B:LYS499 4.9 41.9 1.0

Magnesium binding site 4 out of 8 in 7lgq

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Magnesium binding site 4 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg904

b:30.0
occ:1.00
 O2G B:ATP901 3.0 63.5 1.0
NE2 B:HIS586 3.0 163.2 1.0
O3G B:ATP901 3.1 67.1 1.0
OD1 I:ASN9 3.2 20.0 1.0
PG B:ATP901 3.6 54.0 1.0
CD2 B:HIS586 3.6 156.7 1.0
CE1 B:HIS586 4.0 161.0 1.0
CG I:ASN9 4.1 20.0 1.0
O I:ASN9 4.2 20.0 1.0
NZ B:LYS499 4.4 29.5 1.0
OD2 B:ASP585 4.4 114.7 1.0
O B:THR496 4.5 42.2 1.0
O1G B:ATP901 4.6 56.8 1.0
C I:ASN9 4.6 20.0 1.0
HA I:ASN9 4.6 20.0 1.0
HD21 I:ASN9 4.7 20.0 1.0
CG B:HIS586 4.8 148.0 1.0
O3B B:ATP901 4.8 61.0 1.0
ND2 I:ASN9 4.9 20.0 1.0
ND1 B:HIS586 5.0 140.0 1.0
O2B B:ATP901 5.0 50.2 1.0

Magnesium binding site 5 out of 8 in 7lgq

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Magnesium binding site 5 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg903

b:30.0
occ:1.00
 OE1 C:GLU558 1.8 82.0 1.0
OG1 C:THR500 2.0 59.8 1.0
CD C:GLU558 2.8 86.6 1.0
OE2 C:GLU558 3.0 107.4 1.0
O3B C:ATP901 3.0 61.0 1.0
O1B C:ATP901 3.0 58.1 1.0
OG1 C:THR522 3.1 104.0 1.0
CG2 C:THR522 3.3 105.4 1.0
CB C:THR500 3.4 52.0 1.0
O3G C:ATP901 3.6 67.1 1.0
PB C:ATP901 3.7 45.9 1.0
CB C:THR522 3.7 90.2 1.0
PG C:ATP901 3.8 54.0 1.0
O1G C:ATP901 3.8 56.8 1.0
N C:THR500 3.9 41.6 1.0
CA C:THR500 4.1 47.4 1.0
CG C:GLU558 4.3 59.5 1.0
O1A C:ATP901 4.3 58.4 1.0
N C:THR522 4.4 65.2 1.0
CG2 C:THR500 4.4 52.6 1.0
CB C:LYS499 4.6 38.9 1.0
O3A C:ATP901 4.6 50.8 1.0
CA C:THR522 4.7 83.4 1.0
CE C:LYS499 4.7 32.4 1.0
O2B C:ATP901 4.7 50.2 1.0
C C:LYS499 4.9 41.9 1.0

Magnesium binding site 6 out of 8 in 7lgq

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Magnesium binding site 6 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg904

b:30.0
occ:1.00
 O2G C:ATP901 3.0 63.5 1.0
NE2 C:HIS586 3.0 163.2 1.0
O3G C:ATP901 3.1 67.1 1.0
OD1 K:ASN9 3.2 20.0 1.0
PG C:ATP901 3.6 54.0 1.0
CD2 C:HIS586 3.6 156.7 1.0
CE1 C:HIS586 4.0 161.0 1.0
CG K:ASN9 4.1 20.0 1.0
O K:ASN9 4.2 20.0 1.0
NZ C:LYS499 4.4 29.5 1.0
OD2 C:ASP585 4.4 114.7 1.0
O C:THR496 4.5 42.2 1.0
O1G C:ATP901 4.6 56.8 1.0
C K:ASN9 4.6 20.0 1.0
HA K:ASN9 4.7 20.0 1.0
HD21 K:ASN9 4.7 20.0 1.0
CG C:HIS586 4.8 148.0 1.0
O3B C:ATP901 4.8 61.0 1.0
ND2 K:ASN9 4.9 20.0 1.0
ND1 C:HIS586 5.0 140.0 1.0
O2B C:ATP901 5.0 50.2 1.0

Magnesium binding site 7 out of 8 in 7lgq

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Magnesium binding site 7 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg903

b:30.0
occ:1.00
 OE1 D:GLU558 1.8 82.0 1.0
OG1 D:THR500 2.0 59.8 1.0
CD D:GLU558 2.8 86.6 1.0
OE2 D:GLU558 3.0 107.4 1.0
O3B D:ATP901 3.0 61.0 1.0
O1B D:ATP901 3.0 58.1 1.0
OG1 D:THR522 3.1 104.0 1.0
CG2 D:THR522 3.3 105.4 1.0
CB D:THR500 3.4 52.0 1.0
O3G D:ATP901 3.6 67.1 1.0
PB D:ATP901 3.7 45.9 1.0
CB D:THR522 3.7 90.2 1.0
PG D:ATP901 3.8 54.0 1.0
O1G D:ATP901 3.8 56.8 1.0
N D:THR500 3.9 41.6 1.0
CA D:THR500 4.1 47.4 1.0
CG D:GLU558 4.3 59.5 1.0
O1A D:ATP901 4.3 58.4 1.0
N D:THR522 4.4 65.2 1.0
CG2 D:THR500 4.4 52.6 1.0
CB D:LYS499 4.6 38.9 1.0
O3A D:ATP901 4.6 50.8 1.0
CA D:THR522 4.7 83.4 1.0
CE D:LYS499 4.7 32.4 1.0
O2B D:ATP901 4.7 50.2 1.0
C D:LYS499 4.9 41.9 1.0

Magnesium binding site 8 out of 8 in 7lgq

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Magnesium binding site 8 out of 8 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg904

b:30.0
occ:1.00
 O2G D:ATP901 3.0 63.5 1.0
NE2 D:HIS586 3.0 163.2 1.0
O3G D:ATP901 3.1 67.1 1.0
OD1 L:ASN9 3.2 20.0 1.0
PG D:ATP901 3.6 54.0 1.0
CD2 D:HIS586 3.6 156.7 1.0
CE1 D:HIS586 4.0 161.0 1.0
CG L:ASN9 4.1 20.0 1.0
O L:ASN9 4.2 20.0 1.0
NZ D:LYS499 4.4 29.5 1.0
OD2 D:ASP585 4.4 114.7 1.0
O D:THR496 4.5 42.2 1.0
O1G D:ATP901 4.6 56.8 1.0
C L:ASN9 4.6 20.0 1.0
HA L:ASN9 4.6 20.0 1.0
HD21 L:ASN9 4.7 20.0 1.0
CG D:HIS586 4.8 148.0 1.0
O3B D:ATP901 4.8 61.0 1.0
ND2 L:ASN9 4.9 20.0 1.0
ND1 D:HIS586 5.0 140.0 1.0
O2B D:ATP901 5.0 50.2 1.0
CA L:ASN9 5.0 20.0 1.0

Reference:

I.Sharon, M.Grogg, D.Hilvert, T.M.Schmeing. Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 8X(Asp-Arg)-Asn To Be Published.
Page generated: Wed Oct 2 23:22:05 2024

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