Magnesium in PDB 7m4u: A. Baumannii Ribosome-Eravacycline Complex: 30S

The structure of A. Baumannii Ribosome-Eravacycline Complex: 30S also contains other interesting chemical elements:

Fluorine

(F)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 83;

Binding sites:

The binding sites of Magnesium atom in the A. Baumannii Ribosome-Eravacycline Complex: 30S (pdb code 7m4u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 83 binding sites of Magnesium where determined in the A. Baumannii Ribosome-Eravacycline Complex: 30S, PDB code: 7m4u:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1602 b:12.2 occ:1.00 O23 a:YQM1601 2.0 11.7 1.0 O25 a:YQM1601 3.0 11.7 1.0 C22 a:YQM1601 3.2 11.7 1.0 OP2 a:2MG963 3.4 11.7 1.0 C24 a:YQM1601 3.9 11.7 1.0 OP1 a:2MG963 4.0 11.7 1.0 C21 a:YQM1601 4.1 11.7 1.0 P a:2MG963 4.1 11.7 1.0 N02 a:YQM1601 4.2 11.7 1.0 N7 a:2MG963 4.2 11.7 1.0 C04 a:YQM1601 4.2 11.7 1.0 C01 a:YQM1601 4.4 11.7 1.0 C8 a:2MG963 4.6 11.7 1.0 O5' a:2MG963 4.8 11.7 1.0

Magnesium binding site 2 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1603 b:7.5 occ:1.00 O29 a:YQM1601 1.8 11.7 1.0 O18 a:YQM1601 2.1 11.7 1.0 OP1 a:A1194 2.3 11.7 1.0 OP1 a:C1051 2.5 11.7 1.0 OP2 a:G1195 2.7 11.7 1.0 C15 a:YQM1601 2.8 11.7 1.0 C17 a:YQM1601 2.9 11.7 1.0 C16 a:YQM1601 3.2 11.7 1.0 P a:A1194 3.3 11.7 1.0 O5' a:A1194 3.4 11.7 1.0 P a:G1195 3.4 11.7 1.0 OP1 a:G1195 3.6 11.7 1.0 P a:C1051 3.7 11.7 1.0 O3' a:A1194 3.8 11.7 1.0 O2' a:A1193 3.8 11.7 1.0 OP2 a:C1051 4.0 11.7 1.0 OP2 a:A1194 4.0 11.7 1.0 O a:HOH1702 4.1 9.0 1.0 C14 a:YQM1601 4.2 11.7 1.0 O30 a:YQM1601 4.3 11.7 1.0 C19 a:YQM1601 4.4 11.7 1.0 O5' a:C1051 4.5 11.7 1.0 C3' a:A1194 4.6 11.7 1.0 O28 a:YQM1601 4.6 11.7 1.0 O3' a:A1193 4.7 11.7 1.0 C07 a:YQM1601 4.7 11.7 1.0 C5' a:A1194 4.7 11.7 1.0 C13 a:YQM1601 4.8 11.7 1.0 O27 a:YQM1601 4.9 11.7 1.0 C2' a:A1193 4.9 11.7 1.0 O5' a:G1195 4.9 11.7 1.0 O3' a:G1050 4.9 11.7 1.0

Magnesium binding site 3 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1604 b:9.6 occ:1.00 O a:HOH1774 1.9 10.7 1.0 O a:HOH1847 1.9 11.9 1.0 O a:HOH1763 2.1 12.3 1.0 O a:HOH1881 2.7 13.1 1.0 O a:HOH1864 2.9 11.1 1.0 OP1 a:G643 4.4 9.3 1.0 N7 a:G584 4.4 6.8 1.0 O6 a:G584 4.5 6.8 1.0

Magnesium binding site 4 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1605 b:8.3 occ:1.00 O a:HOH1728 1.9 12.3 1.0 O a:HOH1804 2.1 9.3 1.0 O a:HOH1770 2.4 11.2 1.0 OP2 a:A811 2.4 7.9 1.0 O a:HOH1779 2.4 10.1 1.0 O a:HOH1871 2.5 12.1 1.0 P a:A811 3.3 7.9 1.0 OP1 a:A811 3.4 7.9 1.0 O a:HOH1719 4.2 10.3 1.0 C5' a:A811 4.2 7.9 1.0 O5' a:A811 4.3 7.9 1.0 OP1 a:G574 4.4 11.7 1.0 OP2 a:G574 4.5 11.7 1.0 O3' a:U810 4.6 6.6 1.0 OP2 a:A812 4.7 8.8 1.0 N7 a:A813 4.8 6.2 1.0 OP1 a:A812 5.0 8.8 1.0 P a:G574 5.0 11.7 1.0

Magnesium binding site 5 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1606 b:13.7 occ:1.00 O a:HOH1750 2.0 10.6 1.0 O a:HOH1714 2.0 11.5 1.0 O a:HOH1798 2.0 9.4 1.0 O a:HOH1855 2.4 8.8 1.0 O a:HOH1807 2.5 11.1 1.0 OP1 a:C573 2.5 11.7 1.0 O a:HOH1751 3.3 11.3 1.0 P a:C573 3.7 11.7 1.0 OP2 a:C573 4.1 11.7 1.0 O a:HOH1857 4.3 10.9 1.0 O a:HOH1773 4.3 10.3 1.0 OP1 a:C814 4.5 9.9 1.0 O5' a:C573 4.5 11.7 1.0 C5 a:C814 4.5 9.9 1.0 OP2 a:G574 4.6 11.7 1.0 O a:HOH1734 4.7 10.2 1.0 O3' a:G572 4.9 11.7 1.0

Magnesium binding site 6 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1607 b:8.3 occ:1.00 O a:HOH1782 2.0 13.0 1.0 OP2 a:U557 2.6 9.4 1.0 O a:HOH1765 3.1 10.6 1.0 O a:HOH1870 3.3 12.2 1.0 O a:HOH1769 3.5 9.7 1.0 O a:HOH1822 4.0 11.0 1.0 P a:U557 4.0 9.4 1.0 N2 a:G563 4.1 7.0 1.0 OP1 a:A560 4.1 8.6 1.0 N1 a:G563 4.2 7.0 1.0 OP1 a:U559 4.3 11.3 1.0 OP1 a:G554 4.4 11.7 1.0 O3' a:A556 4.6 11.7 1.0 C2 a:G563 4.7 7.0 1.0 O5' a:U557 4.9 9.4 1.0 OP1 a:U557 4.9 9.4 1.0

Magnesium binding site 7 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1608 b:12.5 occ:1.00 O a:HOH1813 1.9 11.6 1.0 O6 a:G295 2.0 9.2 1.0 O a:HOH1776 2.3 10.8 1.0 OP1 a:G555 2.4 11.7 1.0 O a:HOH1822 2.5 11.0 1.0 O a:HOH1749 2.6 12.3 1.0 C6 a:G295 3.2 9.2 1.0 P a:G555 3.7 11.7 1.0 N1 a:G295 3.9 9.2 1.0 O2' a:G293 4.0 7.7 1.0 O3' a:G554 4.0 11.7 1.0 O6 a:G563 4.3 7.0 1.0 C5 a:G295 4.3 9.2 1.0 OP1 a:U557 4.3 9.4 1.0 N1 a:A296 4.4 9.1 1.0 O a:HOH1860 4.4 12.6 1.0 N6 a:A296 4.4 9.1 1.0 N6 a:A294 4.5 10.9 1.0 N7 a:A294 4.6 10.9 1.0 OP2 a:G555 4.6 11.7 1.0 C6 a:A296 4.7 9.1 1.0 O5' a:G555 4.8 11.7 1.0 N7 a:G295 4.8 9.2 1.0 C5' a:G555 4.9 11.7 1.0

Magnesium binding site 8 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1609 b:11.6 occ:1.00 O a:HOH1772 1.9 11.8 1.0 O a:HOH1850 2.0 11.7 1.0 O a:HOH1858 2.0 11.6 1.0 O a:HOH1884 2.2 11.6 1.0 O a:HOH1877 3.2 11.4 1.0 O a:HOH1883 3.6 12.3 1.0 N6 a:A646 3.7 10.2 1.0 O6 a:G647 3.8 10.4 1.0 N7 a:G647 4.0 10.4 1.0 N7 a:A646 4.2 10.2 1.0 C6 a:A646 4.5 10.2 1.0 C5 a:A646 4.6 10.2 1.0 C6 a:G647 4.6 10.4 1.0 C5 a:G647 4.6 10.4 1.0 OP2 a:A750 4.9 10.8 1.0

Magnesium binding site 9 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1610 b:13.5 occ:1.00 O a:HOH1874 1.9 13.1 1.0 O a:HOH1825 2.0 9.6 1.0 O a:HOH1701 2.0 11.3 1.0 O a:HOH1792 2.0 10.5 1.0 O a:HOH1778 2.3 11.0 1.0 O a:HOH1759 2.7 10.9 1.0 OP2 a:G728 2.9 7.8 1.0 O a:HOH1831 3.6 11.4 1.0 OP1 a:G727 4.0 7.0 1.0 P a:G728 4.2 7.8 1.0 O a:HOH1755 4.5 14.2 1.0 O3' a:G1523 4.6 10.9 1.0 OP1 a:G728 4.6 7.8 1.0 OP2 a:A813 4.7 6.2 1.0 N1 a:A811 4.7 7.9 1.0 C5' a:G727 4.7 7.0 1.0 OP1 a:C1524 4.9 9.6 1.0 O2' a:A813 5.0 6.2 1.0

Magnesium binding site 10 out of 83 in the A. Baumannii Ribosome-Eravacycline Complex: 30S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of A. Baumannii Ribosome-Eravacycline Complex: 30S within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1611 b:10.4 occ:1.00 O a:HOH1793 1.9 12.3 1.0 O a:HOH1762 2.0 10.4 1.0 O a:HOH1740 2.0 10.2 1.0 OP1 a:U575 2.1 11.7 1.0 O a:HOH1771 2.2 11.3 1.0 O a:HOH1734 2.5 10.2 1.0 P a:U575 3.5 11.7 1.0 O3' a:G574 3.9 11.7 1.0 OP2 a:C573 4.2 11.7 1.0 O2' a:G572 4.3 11.7 1.0 C5' a:G818 4.4 11.7 1.0 O3' a:G572 4.4 11.7 1.0 OP1 a:U817 4.4 11.7 1.0 O5' a:U575 4.5 11.7 1.0 C5' a:U575 4.5 11.7 1.0 O a:HOH1786 4.5 9.9 1.0 OP2 a:U575 4.5 11.7 1.0 C4' a:G818 4.5 11.7 1.0 OP2 a:C814 4.6 9.9 1.0 P a:C573 4.9 11.7 1.0

Z.Zhang, C.E.Morgan, R.A.Bonomo, E.W.Yu. Cryo-Em Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump Adej of Acinetobacter Baumannii To Be Published.