Magnesium in PDB 7m4v: A. Baumannii Ribosome-Eravacycline Complex: 50S

The structure of A. Baumannii Ribosome-Eravacycline Complex: 50S also contains other interesting chemical elements:

Fluorine	(F)	2 atoms
Zinc	(Zn)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 159;

Binding sites:

The binding sites of Magnesium atom in the A. Baumannii Ribosome-Eravacycline Complex: 50S (pdb code 7m4v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 159 binding sites of Magnesium where determined in the A. Baumannii Ribosome-Eravacycline Complex: 50S, PDB code: 7m4v:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3203 b:0.0 occ:1.00 O A:HOH4096 2.0 0.0 1.0 O A:HOH3798 2.0 0.0 1.0 O A:HOH4085 2.4 0.0 1.0 O A:HOH3806 2.4 0.0 1.0 OP2 A:A572 2.6 0.0 1.0 O A:HOH3670 3.0 0.0 1.0 O A:HOH3711 3.6 0.0 1.0 P A:A572 3.7 0.0 1.0 O A:HOH3780 3.8 0.0 1.0 O A:HOH4081 3.9 0.0 1.0 OP1 A:A572 3.9 0.0 1.0 O A:HOH3927 4.0 0.0 1.0 O6 A:G575 4.4 0.0 1.0 O4 A:U574 4.6 0.0 1.0 O5' A:A572 4.6 0.0 1.0 C5 A:U574 4.7 0.0 1.0 OP1 A:U571 4.7 0.0 1.0 C5' A:A572 4.7 0.0 1.0 OP2 A:U574 4.9 0.0 1.0 O3' A:U571 4.9 0.0 1.0 C4 A:U574 4.9 0.0 1.0

Magnesium binding site 2 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3204 b:0.0 occ:1.00 O A:HOH3741 1.9 0.0 1.0 O A:HOH3936 2.0 0.0 1.0 O A:HOH3661 2.0 0.0 1.0 O A:HOH4054 2.5 0.0 1.0 O A:HOH3764 2.7 0.0 1.0 O A:HOH3535 2.9 0.0 1.0 O4 A:U2030 3.9 0.0 1.0 O A:HOH3711 4.1 0.0 1.0 O Z:HOH101 4.1 0.0 1.0 O2' A:A2050 4.1 0.0 1.0 O6 A:G2031 4.5 0.0 1.0 OP2 A:C2051 4.6 0.0 1.0 C4 A:U2030 4.7 0.0 1.0 N7 A:A572 4.7 0.0 1.0 C8 A:A572 4.7 0.0 1.0 O3' A:A2050 4.7 0.0 1.0 C5 A:U2030 4.8 0.0 1.0 N7 A:G2031 4.8 0.0 1.0 OP1 A:A572 4.8 0.0 1.0

Magnesium binding site 3 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3205 b:0.0 occ:1.00 O A:HOH3755 2.0 0.0 1.0 O Z:HOH101 2.2 0.0 1.0 O A:HOH3581 2.3 0.0 1.0 O A:HOH4148 2.5 0.0 1.0 O A:HOH4154 2.5 0.0 1.0 OP1 A:C2051 3.0 0.0 1.0 O Z:HOH102 3.0 0.0 1.0 OP2 A:C2051 3.4 0.0 1.0 O A:HOH3936 3.7 0.0 1.0 P A:C2051 3.7 0.0 1.0 OE1 Z:GLN5 4.0 0.0 1.0 O A:HOH3853 4.1 0.0 1.0 O A:HOH4081 4.2 0.0 1.0 O A:HOH4085 4.3 0.0 1.0 O A:HOH3711 4.4 0.0 1.0 CD Z:GLN5 4.4 0.0 1.0 NE2 Z:GLN5 4.5 0.0 1.0 O5' A:C2051 4.7 0.0 1.0 O3' A:A2050 4.9 0.0 1.0

Magnesium binding site 4 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3206 b:0.0 occ:1.00 OP2 A:G576 1.9 0.0 1.0 O A:HOH3813 2.0 0.0 1.0 O A:HOH3748 2.4 0.0 1.0 O A:HOH3749 2.5 0.0 1.0 O A:HOH3418 2.5 0.0 1.0 O A:HOH3533 2.8 0.0 1.0 P A:G576 3.3 0.0 1.0 OP1 A:C2013 3.7 0.0 1.0 O5' A:G576 3.8 0.0 1.0 OP1 A:G576 4.1 0.0 1.0 O A:HOH3678 4.3 0.0 1.0 O A:HOH3666 4.3 0.0 1.0 OP2 A:G2014 4.4 0.0 1.0 O3' A:G575 4.4 0.0 1.0 C8 A:G576 4.5 0.0 1.0 OP2 A:G575 4.5 0.0 1.0 C3' A:G575 4.5 0.0 1.0 N7 A:G576 4.5 0.0 1.0 O5' A:G575 4.6 0.0 1.0 P A:C2013 4.6 0.0 1.0 OP2 A:C2013 4.6 0.0 1.0 OP2 A:G577 4.8 0.0 1.0

Magnesium binding site 5 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3207 b:0.0 occ:1.00 O A:HOH3598 1.9 0.0 1.0 O A:HOH3570 2.0 0.0 1.0 OP1 A:A2573 2.0 0.0 1.0 OP1 A:G2572 2.1 0.0 1.0 O A:HOH3614 2.4 0.0 1.0 O A:HOH3788 2.5 0.0 1.0 P A:A2573 3.3 0.0 1.0 P A:G2572 3.3 0.0 1.0 O3' A:C2571 3.6 0.0 1.0 OP2 A:A2573 3.8 0.0 1.0 O3' A:G2572 4.2 0.0 1.0 OP2 A:A2048 4.3 0.0 1.0 OP2 A:G2049 4.3 0.0 1.0 O5' A:G2572 4.3 0.0 1.0 C3' A:G2572 4.3 0.0 1.0 C5' A:G2572 4.3 0.0 1.0 OP2 A:G2572 4.4 0.0 1.0 O5' A:A2573 4.4 0.0 1.0 N2 A:G2572 4.5 0.0 1.0 OP1 A:G2049 4.5 0.0 1.0 N3 A:G2572 4.7 0.0 1.0 C2 A:G2572 4.7 0.0 1.0 P A:G2049 4.9 0.0 1.0 C3' A:C2571 4.9 0.0 1.0 C4' A:G2572 5.0 0.0 1.0

Magnesium binding site 6 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3208 b:0.0 occ:1.00 O A:HOH4137 2.0 0.0 1.0 O A:HOH4143 2.0 0.0 1.0 O A:HOH3875 2.0 0.0 1.0 O A:HOH4158 2.0 0.0 1.0 O A:HOH3801 2.7 0.0 1.0 O A:HOH3550 3.1 0.0 1.0 O A:HOH3909 3.3 0.0 1.0 O A:HOH3799 4.1 0.0 1.0 O A:HOH3784 4.3 0.0 1.0 O4 A:U578 4.6 0.0 1.0 O6 A:G1254 4.8 0.0 1.0 O4 A:U1253 4.8 0.0 1.0 N6 A:A1255 5.0 0.0 1.0

Magnesium binding site 7 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3209 b:0.0 occ:1.00 O A:HOH3816 1.8 0.0 1.0 O A:HOH3697 2.2 0.0 1.0 O A:HOH3757 2.5 0.0 1.0 O A:HOH3802 2.6 0.0 1.0 O R:HOH202 2.6 0.0 1.0 O6 A:G1259 2.6 0.0 1.0 C6 A:G1259 3.8 0.0 1.0 O A:HOH4116 3.8 0.0 1.0 O A:HOH3606 4.2 0.0 1.0 OP2 A:A2010 4.2 0.0 1.0 N1 A:G1259 4.3 0.0 1.0 O4 A:U1258 4.4 0.0 1.0 N1 A:A1260 4.4 0.0 1.0 NH2 R:ARG99 4.7 0.0 1.0 C5 A:U1258 4.9 0.0 1.0 C4 A:U1258 5.0 0.0 1.0 C5 A:G1259 5.0 0.0 1.0

Magnesium binding site 8 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3210 b:0.0 occ:1.00 O A:HOH3716 2.0 0.0 1.0 O A:HOH3572 2.2 0.0 1.0 O A:HOH3462 2.4 0.0 1.0 O A:HOH4089 2.4 0.0 1.0 O A:HOH3831 2.5 0.0 1.0 O A:HOH4125 2.6 0.0 1.0 O A:HOH3917 3.8 0.0 1.0 O A:HOH3889 4.1 0.0 1.0 O4 A:U2007 4.2 0.0 1.0 O6 A:G2006 4.2 0.0 1.0 N7 A:G2006 4.3 0.0 1.0 O A:HOH3600 4.3 0.0 1.0 OP2 A:U1262 4.3 0.0 1.0 O A:HOH4060 4.4 0.0 1.0 O A:HOH4072 4.5 0.0 1.0 N6 A:A2005 4.6 0.0 1.0 N7 A:A2005 4.6 0.0 1.0 C6 A:G2006 5.0 0.0 1.0

Magnesium binding site 9 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3211 b:0.0 occ:1.00 O A:HOH4144 2.0 0.0 1.0 O A:HOH3729 2.0 0.0 1.0 O A:HOH3862 2.0 0.0 1.0 O A:HOH3471 2.2 0.0 1.0 O A:HOH4067 2.6 0.0 1.0 O A:HOH3610 3.9 0.0 1.0 O A:HOH3623 4.0 0.0 1.0 O A:HOH4091 4.0 0.0 1.0 O A:HOH4108 4.1 0.0 1.0 N7 A:G2045 4.1 0.0 1.0 O6 A:G2045 4.2 0.0 1.0 N7 A:G2044 4.3 0.0 1.0 O A:HOH3454 4.3 0.0 1.0 O6 A:G2044 4.4 0.0 1.0 N4 A:C2043 4.7 0.0 1.0 N4 A:C2046 4.8 0.0 1.0 C4 A:C2043 4.9 0.0 1.0 C6 A:G2045 4.9 0.0 1.0 C5 A:G2045 4.9 0.0 1.0 C5 A:C2043 4.9 0.0 1.0 C5 A:G2044 5.0 0.0 1.0

Magnesium binding site 10 out of 159 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3212 b:0.0 occ:1.00 O A:HOH3804 1.9 0.0 1.0 O A:HOH3690 2.0 0.0 1.0 OP2 A:A1260 2.2 0.0 1.0 O A:HOH3857 2.3 0.0 1.0 O A:HOH3695 2.3 0.0 1.0 OP1 A:U2611 2.4 0.0 1.0 P A:A1260 3.4 0.0 1.0 P A:U2611 3.6 0.0 1.0 OP1 A:A1260 3.7 0.0 1.0 OP2 A:U2611 3.9 0.0 1.0 O2' A:U1262 4.2 0.0 1.0 O A:HOH3823 4.2 0.0 1.0 O3' A:G1259 4.3 0.0 1.0 O5' A:A1260 4.5 0.0 1.0 C5' A:U2611 4.7 0.0 1.0 O5' A:U2611 4.7 0.0 1.0 C5' A:A1260 4.7 0.0 1.0 O3' A:A2610 4.7 0.0 1.0 C3' A:A2610 4.7 0.0 1.0 OP1 A:A2610 4.8 0.0 1.0

Z.Zhang, C.E.Morgan, R.A.Bonomo, E.W.Yu. Cryo-Em Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump Adej of Acinetobacter Baumannii To Be Published.