Magnesium in PDB 7mca: Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna.

The binding sites of Magnesium atom in the Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna. (pdb code 7mca). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna., PDB code: 7mca:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:13.6 occ:1.00 OG1 A:THR486 3.0 18.0 1.0 O2G D:AGS2001 3.2 24.2 1.0 OE2 A:GLU567 3.3 27.8 1.0 OD1 A:ASP566 3.4 24.0 1.0 NH2 D:ARG267 3.4 15.5 1.0 O3A D:AGS2001 3.5 24.2 1.0 CB A:THR486 3.5 18.0 1.0 CG2 A:THR486 3.6 18.0 1.0 O2B D:AGS2001 3.7 24.2 1.0 OD2 A:ASP566 3.9 24.0 1.0 CG A:ASP566 4.0 24.0 1.0 PB D:AGS2001 4.1 24.2 1.0 PG D:AGS2001 4.2 24.2 1.0 CD A:GLU567 4.2 27.8 1.0 O3B D:AGS2001 4.4 24.2 1.0 OE1 A:GLU567 4.4 27.8 1.0 S1G D:AGS2001 4.5 24.2 1.0 O5' D:AGS2001 4.7 24.2 1.0 OH D:TYR232 4.7 12.6 1.0 CZ D:ARG267 4.8 15.5 1.0 PA D:AGS2001 4.8 24.2 1.0 NH2 A:ARG490 4.8 18.2 1.0

Magnesium binding site 2 out of 4 in the Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2003 b:11.0 occ:1.00 O2G D:AGS2002 2.2 13.9 1.0 OG1 D:THR109 3.0 8.8 1.0 PG D:AGS2002 3.6 13.9 1.0 OD1 D:ASP217 3.8 11.5 1.0 OE2 E:GLU154 3.9 13.2 1.0 O2B D:AGS2002 4.0 13.9 1.0 CB D:ASP217 4.0 11.5 1.0 CG D:ASP217 4.0 11.5 1.0 O3G D:AGS2002 4.2 13.9 1.0 CB D:CYS250 4.2 8.6 1.0 S1G D:AGS2002 4.3 13.9 1.0 CB D:THR109 4.5 8.8 1.0 OE1 E:GLU154 4.5 13.2 1.0 CD E:GLU154 4.6 13.2 1.0 CA D:ASP217 4.6 11.5 1.0 OD2 D:ASP217 4.7 11.5 1.0 O3B D:AGS2002 4.7 13.9 1.0 OE2 D:GLU218 4.8 13.6 1.0 SG D:CYS250 4.8 8.6 1.0 PB D:AGS2002 4.9 13.9 1.0 N D:THR109 5.0 8.8 1.0 CE D:LYS108 5.0 11.6 1.0

Magnesium binding site 3 out of 4 in the Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg2002 b:30.6 occ:1.00 OG1 E:THR44 1.7 18.1 1.0 OD2 E:ASP133 2.4 14.8 1.0 O2B E:AGS2001 2.8 15.9 1.0 O3G E:AGS2001 2.9 15.9 1.0 CB E:THR44 3.0 18.1 1.0 CG E:ASP133 3.3 14.8 1.0 OD1 E:ASP133 3.4 14.8 1.0 CG2 E:THR44 3.6 18.1 1.0 O2A E:AGS2001 3.9 15.9 1.0 PG E:AGS2001 4.0 15.9 1.0 O2G E:AGS2001 4.1 15.9 1.0 CA E:THR44 4.2 18.1 1.0 PB E:AGS2001 4.2 15.9 1.0 N E:THR44 4.3 18.1 1.0 O3B E:AGS2001 4.5 15.9 1.0 CB E:ASP133 4.7 14.8 1.0 O1B E:AGS2001 4.9 15.9 1.0

Magnesium binding site 4 out of 4 in the Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the S. Cerevisiae Origin Recognition Complex Bound to the Replication Initiator CDC6 and the ARS1 Origin Dna. within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg602 b:30.8 occ:1.00 OG1 I:THR115 2.2 53.6 1.0 O1A I:AGS601 2.5 53.6 1.0 O3G I:AGS601 3.0 53.6 1.0 CB I:THR115 3.5 53.6 1.0 O2G I:AGS601 3.6 53.6 1.0 PA I:AGS601 3.7 53.6 1.0 PG I:AGS601 3.8 53.6 1.0 O2A I:AGS601 4.0 53.6 1.0 CG2 I:THR115 4.0 53.6 1.0 OD1 I:ASP223 4.1 71.1 1.0 O3B I:AGS601 4.1 53.6 1.0 O2B I:AGS601 4.4 53.6 1.0 CG I:GLU224 4.4 65.5 1.0 OE2 I:GLU224 4.5 65.5 1.0 N I:THR115 4.5 53.6 1.0 CA I:THR115 4.5 53.6 1.0 CD I:GLU224 4.6 65.5 1.0 O3A I:AGS601 4.6 53.6 1.0 PB I:AGS601 4.7 53.6 1.0 NH1 A:ARG616 4.7 41.1 1.0 O5' I:AGS601 4.9 53.6 1.0 CG I:ASP223 4.9 71.1 1.0

X.Feng, M.Barbon, Y.Noguchi, B.Stillman, C.Speck, H.Li. The Structure of Orc/CDC6 on An Origin Dna Reveals the Mechanism of Orc Activation By the Replication Initiator CDC6 To Be Published.