Magnesium in PDB 7mcs: Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna

The binding sites of Magnesium atom in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna (pdb code 7mcs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna, PDB code: 7mcs:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:31.0 occ:1.00 OG1 B:THR143 2.0 20.1 1.0 O1G B:ANP601 2.1 32.7 1.0 N3B B:ANP601 2.4 32.7 1.0 PG B:ANP601 2.5 32.7 1.0 CB B:THR143 3.0 20.1 1.0 O2G B:ANP601 3.0 32.7 1.0 OD2 B:ASP232 3.0 17.4 1.0 CG2 B:THR143 3.2 20.1 1.0 PB B:ANP601 3.8 32.7 1.0 CG B:ASP232 4.0 17.4 1.0 O3A B:ANP601 4.0 32.7 1.0 O3G B:ANP601 4.0 32.7 1.0 OD1 B:ASP232 4.2 17.4 1.0 OE2 B:GLU233 4.2 23.0 1.0 CA B:THR143 4.4 20.1 1.0 O1B B:ANP601 4.4 32.7 1.0 NH1 A:ARG284 4.6 38.5 1.0 N B:THR143 4.7 20.1 1.0 CG B:GLU233 4.9 23.0 1.0 OD1 A:ASN257 4.9 40.6 1.0 CD B:GLU233 4.9 23.0 1.0

Magnesium binding site 2 out of 6 in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:8.6 occ:1.00 OG1 C:THR143 2.2 9.9 1.0 N3B C:ANP601 2.2 12.1 1.0 PG C:ANP601 3.1 12.1 1.0 O2G C:ANP601 3.1 12.1 1.0 CB C:THR143 3.4 9.9 1.0 PB C:ANP601 3.6 12.1 1.0 O1G C:ANP601 3.6 12.1 1.0 O2B C:ANP601 3.8 12.1 1.0 CG2 C:THR143 4.1 9.9 1.0 OD2 C:ASP232 4.2 15.2 1.0 OD1 C:ASP232 4.3 15.2 1.0 O1B C:ANP601 4.3 12.1 1.0 NH1 B:ARG284 4.4 14.7 1.0 O3G C:ANP601 4.5 12.1 1.0 CA C:THR143 4.5 9.9 1.0 CG C:ASP232 4.6 15.2 1.0 ND2 B:ASN257 4.6 12.1 1.0 N C:THR143 4.6 9.9 1.0 O3A C:ANP601 4.7 12.1 1.0 O2A C:ANP601 4.7 12.1 1.0 OE2 C:GLU233 4.8 13.9 1.0

Magnesium binding site 3 out of 6 in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:11.7 occ:1.00 OG1 D:THR143 2.0 10.6 1.0 O3G D:ANP601 2.1 27.3 1.0 O2B D:ANP601 2.5 27.3 1.0 CB D:THR143 3.3 10.6 1.0 OD2 D:ASP232 3.5 12.9 1.0 PG D:ANP601 3.5 27.3 1.0 PB D:ANP601 3.8 27.3 1.0 CG2 D:THR143 4.0 10.6 1.0 OE2 D:GLU233 4.0 11.4 1.0 N3B D:ANP601 4.1 27.3 1.0 O1G D:ANP601 4.1 27.3 1.0 OD1 D:ASP232 4.2 12.9 1.0 CG D:ASP232 4.2 12.9 1.0 N D:THR143 4.3 10.6 1.0 CA D:THR143 4.3 10.6 1.0 O2A D:ANP601 4.5 27.3 1.0 O2G D:ANP601 4.7 27.3 1.0 O1B D:ANP601 4.7 27.3 1.0 O3A D:ANP601 4.8 27.3 1.0 O1A D:ANP601 4.8 27.3 1.0 PA D:ANP601 5.0 27.3 1.0

Magnesium binding site 4 out of 6 in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:16.4 occ:1.00 O3G E:ANP601 2.2 27.3 1.0 OG1 E:THR143 2.3 10.5 1.0 O2B E:ANP601 2.6 27.3 1.0 CB E:THR143 3.3 10.5 1.0 OD1 E:ASP232 3.4 27.3 1.0 PG E:ANP601 3.7 27.3 1.0 CG2 E:THR143 3.8 10.5 1.0 PB E:ANP601 4.0 27.3 1.0 O2A E:ANP601 4.1 27.3 1.0 O1G E:ANP601 4.2 27.3 1.0 CG E:ASP232 4.4 27.3 1.0 N3B E:ANP601 4.4 27.3 1.0 CG E:GLU233 4.5 18.3 1.0 CA E:THR143 4.6 10.5 1.0 OD2 E:ASP232 4.6 27.3 1.0 O1B E:ANP601 4.6 27.3 1.0 O2G E:ANP601 4.7 27.3 1.0 CD E:GLU233 4.8 18.3 1.0 OD1 D:ASN257 4.8 20.5 1.0 N E:THR143 4.9 10.5 1.0 NH1 D:ARG284 4.9 13.8 1.0 ND2 D:ASN257 4.9 20.5 1.0

Magnesium binding site 5 out of 6 in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:8.8 occ:1.00 O2B F:ANP601 2.3 11.3 1.0 OG1 F:THR143 2.3 7.4 1.0 O1G F:ANP601 2.3 11.3 1.0 CB F:THR143 3.2 7.4 1.0 PG F:ANP601 3.6 11.3 1.0 PB F:ANP601 3.7 11.3 1.0 CG2 F:THR143 3.7 7.4 1.0 O2A F:ANP601 3.8 11.3 1.0 OD2 F:ASP232 4.0 11.9 1.0 OE2 F:GLU233 4.0 12.1 1.0 N3B F:ANP601 4.1 11.3 1.0 OD1 F:ASP232 4.1 11.9 1.0 O2G F:ANP601 4.3 11.3 1.0 NH2 E:ARG284 4.3 12.1 1.0 O1B F:ANP601 4.4 11.3 1.0 CG F:ASP232 4.4 11.9 1.0 CA F:THR143 4.6 7.4 1.0 ND2 E:ASN257 4.6 6.8 1.0 CD F:GLU233 4.7 12.1 1.0 O3A F:ANP601 4.7 11.3 1.0 PA F:ANP601 4.7 11.3 1.0 O3G F:ANP601 4.8 11.3 1.0 N F:THR143 4.9 7.4 1.0 O1A F:ANP601 5.0 11.3 1.0

Magnesium binding site 6 out of 6 in the Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Electron Microscopy Structure of Tnsc(1-503)A225V Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:39.6 occ:1.00 OG1 G:THR143 2.0 44.2 1.0 N3B G:ANP601 2.5 46.9 1.0 CB G:THR143 2.7 44.2 1.0 CG2 G:THR143 2.8 44.2 1.0 O1G G:ANP601 3.1 46.9 1.0 PG G:ANP601 3.4 46.9 1.0 NH2 F:ARG284 3.8 30.1 1.0 PB G:ANP601 4.0 46.9 1.0 CA G:THR143 4.2 44.2 1.0 O2A G:ANP601 4.3 46.9 1.0 OD2 G:ASP232 4.3 57.0 1.0 O2B G:ANP601 4.3 46.9 1.0 O2G G:ANP601 4.4 46.9 1.0 O3G G:ANP601 4.6 46.9 1.0 O3A G:ANP601 4.7 46.9 1.0 OE2 G:GLU233 4.7 50.2 1.0 N G:THR143 4.7 44.2 1.0 PA G:ANP601 4.9 46.9 1.0 CG G:GLU233 4.9 50.2 1.0

Y.Shen, J.Gomez-Blanco, M.T.Petassi, J.E.Peters, J.Ortega, A.Guarne. Structural Basis For Dna Targeting By the TN7 Transposon. Nat.Struct.Mol.Biol. V. 29 143 2022.
ISSN: ESSN 1545-9985
PubMed: 35173349
DOI: 10.1038/S41594-022-00724-8