Magnesium in PDB 7mir: Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex

All present enzymatic activity of Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex:
2.4.2.31;

The structure of Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex (pdb code 7mir). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex, PDB code: 7mir:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:35.7 occ:1.00 O1B A:ATP904 1.9 44.8 1.0 O1G A:ATP904 2.0 44.8 1.0 OD1 A:ASN534 2.6 26.6 1.0 OD2 A:ASP542 2.9 33.2 1.0 PB A:ATP904 3.1 44.8 1.0 HH21 A:ARG536 3.2 28.9 1.0 PG A:ATP904 3.2 44.8 1.0 HH22 A:ARG536 3.3 28.9 1.0 O3B A:ATP904 3.4 44.8 1.0 HB2 A:ASP542 3.5 33.2 1.0 NH2 A:ARG536 3.6 28.9 1.0 CG A:ASN534 3.6 26.6 1.0 O A:TYR532 3.7 32.7 1.0 HD21 A:ASN534 3.8 26.6 1.0 CG A:ASP542 3.8 33.2 1.0 ND2 A:ASN534 4.1 26.6 1.0 CB A:ASP542 4.1 33.2 1.0 O2G A:ATP904 4.2 44.8 1.0 O2B A:ATP904 4.2 44.8 1.0 O3A A:ATP904 4.2 44.8 1.0 O3G A:ATP904 4.3 44.8 1.0 HB3 A:TYR532 4.3 32.7 1.0 HB3 A:ASP542 4.4 33.2 1.0 HA A:ASN534 4.4 26.6 1.0 O2A A:ATP904 4.4 44.8 1.0 MG A:MG903 4.5 36.8 1.0 HB2 A:TYR532 4.8 32.7 1.0 HH A:TYR452 4.9 30.4 1.0 CB A:ASN534 4.9 26.6 1.0 HE1 A:TYR452 4.9 30.4 1.0 CZ A:ARG536 4.9 28.9 1.0 C A:TYR532 4.9 32.7 1.0 OD1 A:ASP542 4.9 33.2 1.0 HD22 A:ASN534 4.9 26.6 1.0 CB A:TYR532 5.0 32.7 1.0 CA A:ASN534 5.0 26.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Sidj-Sdea-Cam Reaction Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:36.8 occ:1.00 O2B A:ATP904 2.1 44.8 1.0 OD2 A:ASP542 2.2 33.2 1.0 OD2 A:ASP545 2.5 34.3 1.0 OD1 A:ASP542 2.5 33.2 1.0 CG A:ASP542 2.7 33.2 1.0 PB A:ATP904 3.1 44.8 1.0 HZ1 A:LYS367 3.2 43.5 1.0 O1B A:ATP904 3.2 44.8 1.0 CG A:ASP545 3.5 34.3 1.0 OD1 A:ASP545 3.8 34.3 1.0 NZ A:LYS367 4.0 43.5 1.0 HH21 A:ARG352 4.0 47.0 1.0 CB A:ASP542 4.2 33.2 1.0 O3A A:ATP904 4.2 44.8 1.0 O3B A:ATP904 4.2 44.8 1.0 HZ3 A:LYS367 4.3 43.5 1.0 HZ2 A:LYS367 4.4 43.5 1.0 MG A:MG902 4.5 35.7 1.0 HD21 A:ASN534 4.5 26.6 1.0 HB3 A:ASP542 4.5 33.2 1.0 HB2 A:ASP542 4.6 33.2 1.0 O1A A:ATP904 4.6 44.8 1.0 HE3 A:LYS367 4.8 43.5 1.0 CB A:ASP545 4.8 34.3 1.0 O2G A:ATP904 4.8 44.8 1.0 HB2 A:ASP545 4.8 34.3 1.0 PA A:ATP904 4.8 44.8 1.0 HA A:ASP542 4.8 33.2 1.0 CE A:LYS367 4.9 43.5 1.0 HE2 A:LYS367 4.9 43.5 1.0 NH2 A:ARG352 4.9 47.0 1.0 O2A A:ATP904 4.9 44.8 1.0 PG A:ATP904 5.0 44.8 1.0

A.Osinski, M.Black, K.Pawlowski, Z.Chen, Y.Li, V.Tagliabracci. Structural and Mechanistic Basis For Protein Glutamylation By the Kinase Fold To Be Published.