Magnesium in PDB 7mis: Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex

Other elements in 7mis:

The structure of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex also contains other interesting chemical elements:

Sodium (Na) 1 atom
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex (pdb code 7mis). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex, PDB code: 7mis:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7mis

Go back to Magnesium Binding Sites List in 7mis
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:31.1
occ:1.00
OD2 A:ASP542 2.0 27.2 1.0
OD2 A:ASP545 2.2 28.1 1.0
O2B A:ATP1001 2.4 41.2 1.0
CG A:ASP542 3.0 27.2 1.0
O1B A:ATP1001 3.2 41.2 1.0
PB A:ATP1001 3.3 41.2 1.0
CG A:ASP545 3.3 28.1 1.0
OD1 A:ASP542 3.3 27.2 1.0
HZ3 A:LYS367 3.7 41.2 1.0
OD1 A:ASP545 3.7 28.1 1.0
HH22 A:ARG352 4.0 45.2 1.0
MG A:MG1003 4.1 25.6 1.0
O3A A:ATP1001 4.2 41.2 1.0
O1A A:ATP1001 4.2 41.2 1.0
CB A:ASP542 4.3 27.2 1.0
HD21 A:ASN534 4.3 18.0 1.0
HB3 A:ASP542 4.4 27.2 1.0
NH2 A:ARG352 4.4 45.2 1.0
HB2 A:ASP542 4.5 27.2 1.0
NZ A:LYS367 4.5 41.2 1.0
HB2 A:ASP545 4.6 28.1 1.0
CB A:ASP545 4.6 28.1 1.0
O3B A:ATP1001 4.6 41.2 1.0
HZ2 A:LYS367 4.6 41.2 1.0
PA A:ATP1001 4.7 41.2 1.0
HH21 A:ARG352 4.7 45.2 1.0
HH12 A:ARG352 4.7 45.2 1.0
HB3 A:ASP545 4.9 28.1 1.0
O2A A:ATP1001 4.9 41.2 1.0
HE2 A:LYS367 4.9 41.2 1.0
CZ A:ARG352 5.0 45.2 1.0

Magnesium binding site 2 out of 2 in 7mis

Go back to Magnesium Binding Sites List in 7mis
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:25.6
occ:1.00
O1B A:ATP1001 1.9 41.2 1.0
OD1 A:ASN534 2.0 18.0 1.0
O1G A:ATP1001 2.6 41.2 1.0
OD2 A:ASP542 3.0 27.2 1.0
CG A:ASN534 3.0 18.0 1.0
HD21 A:ASN534 3.0 18.0 1.0
HB2 A:ASP542 3.1 27.2 1.0
PB A:ATP1001 3.2 41.2 1.0
ND2 A:ASN534 3.4 18.0 1.0
HH21 A:ARG536 3.6 20.6 1.0
O3B A:ATP1001 3.7 41.2 1.0
PG A:ATP1001 3.7 41.2 1.0
CB A:ASP542 3.8 27.2 1.0
CG A:ASP542 3.8 27.2 1.0
HH22 A:ARG536 3.9 20.6 1.0
HB3 A:ASP542 3.9 27.2 1.0
O2B A:ATP1001 4.0 41.2 1.0
O A:TYR532 4.0 24.1 1.0
NH2 A:ARG536 4.1 20.6 1.0
MG A:MG1002 4.1 31.1 1.0
HA A:ASN534 4.1 18.0 1.0
HD22 A:ASN534 4.2 18.0 1.0
CB A:ASN534 4.4 18.0 1.0
O2A A:ATP1001 4.4 41.2 1.0
O3A A:ATP1001 4.4 41.2 1.0
O2G A:ATP1001 4.6 41.2 1.0
CA A:ASN534 4.7 18.0 1.0
O3G A:ATP1001 4.8 41.2 1.0
HB3 A:ASN534 4.8 18.0 1.0
HB3 A:TYR532 4.9 24.1 1.0
N A:ASN534 4.9 18.0 1.0
HB2 A:ASN534 4.9 18.0 1.0
OD1 A:ASP542 5.0 27.2 1.0

Reference:

A.Osinski, M.Black, K.Pawlowski, Z.Chen, Y.Li, V.Tagliabracci. Structural and Mechanistic Basis For Protein Glutamylation By the Kinase Fold To Be Published.
Page generated: Sat Aug 21 16:44:09 2021

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