Magnesium in PDB 7mis: Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex

Other elements in 7mis:

The structure of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex also contains other interesting chemical elements:

Sodium (Na) 1 atom
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex (pdb code 7mis). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex, PDB code: 7mis:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7mis

Go back to Magnesium Binding Sites List in 7mis
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:31.1
occ:1.00
OD2 A:ASP542 2.0 27.2 1.0
OD2 A:ASP545 2.2 28.1 1.0
O2B A:ATP1001 2.4 41.2 1.0
CG A:ASP542 3.0 27.2 1.0
O1B A:ATP1001 3.2 41.2 1.0
PB A:ATP1001 3.3 41.2 1.0
CG A:ASP545 3.3 28.1 1.0
OD1 A:ASP542 3.3 27.2 1.0
HZ3 A:LYS367 3.7 41.2 1.0
OD1 A:ASP545 3.7 28.1 1.0
HH22 A:ARG352 4.0 45.2 1.0
MG A:MG1003 4.1 25.6 1.0
O3A A:ATP1001 4.2 41.2 1.0
O1A A:ATP1001 4.2 41.2 1.0
CB A:ASP542 4.3 27.2 1.0
HD21 A:ASN534 4.3 18.0 1.0
HB3 A:ASP542 4.4 27.2 1.0
NH2 A:ARG352 4.4 45.2 1.0
HB2 A:ASP542 4.5 27.2 1.0
NZ A:LYS367 4.5 41.2 1.0
HB2 A:ASP545 4.6 28.1 1.0
CB A:ASP545 4.6 28.1 1.0
O3B A:ATP1001 4.6 41.2 1.0
HZ2 A:LYS367 4.6 41.2 1.0
PA A:ATP1001 4.7 41.2 1.0
HH21 A:ARG352 4.7 45.2 1.0
HH12 A:ARG352 4.7 45.2 1.0
HB3 A:ASP545 4.9 28.1 1.0
O2A A:ATP1001 4.9 41.2 1.0
HE2 A:LYS367 4.9 41.2 1.0
CZ A:ARG352 5.0 45.2 1.0

Magnesium binding site 2 out of 2 in 7mis

Go back to Magnesium Binding Sites List in 7mis
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Sidj-Sdec-Cam Reaction Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:25.6
occ:1.00
O1B A:ATP1001 1.9 41.2 1.0
OD1 A:ASN534 2.0 18.0 1.0
O1G A:ATP1001 2.6 41.2 1.0
OD2 A:ASP542 3.0 27.2 1.0
CG A:ASN534 3.0 18.0 1.0
HD21 A:ASN534 3.0 18.0 1.0
HB2 A:ASP542 3.1 27.2 1.0
PB A:ATP1001 3.2 41.2 1.0
ND2 A:ASN534 3.4 18.0 1.0
HH21 A:ARG536 3.6 20.6 1.0
O3B A:ATP1001 3.7 41.2 1.0
PG A:ATP1001 3.7 41.2 1.0
CB A:ASP542 3.8 27.2 1.0
CG A:ASP542 3.8 27.2 1.0
HH22 A:ARG536 3.9 20.6 1.0
HB3 A:ASP542 3.9 27.2 1.0
O2B A:ATP1001 4.0 41.2 1.0
O A:TYR532 4.0 24.1 1.0
NH2 A:ARG536 4.1 20.6 1.0
MG A:MG1002 4.1 31.1 1.0
HA A:ASN534 4.1 18.0 1.0
HD22 A:ASN534 4.2 18.0 1.0
CB A:ASN534 4.4 18.0 1.0
O2A A:ATP1001 4.4 41.2 1.0
O3A A:ATP1001 4.4 41.2 1.0
O2G A:ATP1001 4.6 41.2 1.0
CA A:ASN534 4.7 18.0 1.0
O3G A:ATP1001 4.8 41.2 1.0
HB3 A:ASN534 4.8 18.0 1.0
HB3 A:TYR532 4.9 24.1 1.0
N A:ASN534 4.9 18.0 1.0
HB2 A:ASN534 4.9 18.0 1.0
OD1 A:ASP542 5.0 27.2 1.0

Reference:

A.Osinski, M.Black, K.Pawlowski, Z.Chen, Y.Li, V.Tagliabracci. Structural and Mechanistic Basis For Protein Glutamylation By the Kinase Fold To Be Published.
Page generated: Sat Aug 21 16:44:09 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy