Magnesium in PDB 7mk9: Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)

All present enzymatic activity of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused):
2.7.7.6;

The structure of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) (pdb code 7mk9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused), PDB code: 7mk9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:188.5 occ:1.00 N A:GLY1395 2.0 188.9 1.0 CA A:THR1394 2.4 200.0 1.0 CG2 A:THR1394 2.5 200.0 1.0 C A:THR1394 2.5 200.0 1.0 CB A:THR1394 2.9 200.0 1.0 CA A:GLY1395 3.2 188.9 1.0 N A:THR1394 3.7 200.0 1.0 CG A:LEU860 3.7 181.9 1.0 O A:THR1394 3.7 200.0 1.0 OG1 A:THR1394 3.8 200.0 1.0 CD2 A:LEU860 3.9 181.9 1.0 CD1 A:LEU860 4.0 181.9 1.0 OG A:SER859 4.0 191.6 1.0 O A:ASN1393 4.2 217.2 1.0 C A:ASN1393 4.4 217.2 1.0 C A:GLY1395 4.5 188.9 1.0 O A:GLY1395 4.7 188.9 1.0

Magnesium binding site 2 out of 2 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg101 b:247.0 occ:1.00 OP1 R:U13 1.2 78.6 1.0 OD1 A:ASP483 2.0 219.9 1.0 P R:U13 2.2 76.9 1.0 OD2 A:ASP483 2.2 219.9 1.0 OD1 A:ASP481 2.4 210.1 1.0 CG A:ASP483 2.4 219.9 1.0 OD1 A:ASP485 2.7 213.0 1.0 OP2 R:U13 2.7 75.2 1.0 O3' R:A12 2.9 235.4 1.0 OD2 A:ASP481 2.9 210.1 1.0 CG A:ASP481 3.0 210.1 1.0 O5' R:U13 3.6 78.8 1.0 CG A:ASP485 3.6 213.0 1.0 CB A:ASP483 3.8 219.9 1.0 OD2 A:ASP485 3.9 213.0 1.0 C3' R:A12 4.1 235.4 1.0 C5' R:U13 4.1 77.9 1.0 C5' R:A12 4.3 235.4 1.0 C4' R:A12 4.4 235.4 1.0 CB A:ASP481 4.5 210.1 1.0 OP1 R:A12 4.5 235.4 1.0 N A:ASP483 4.6 219.9 1.0 O5' R:A12 4.7 235.4 1.0 CA A:ASP483 4.7 219.9 1.0 N A:ASP481 4.9 210.1 1.0 C A:ASP483 4.9 219.9 1.0 CB A:ASP485 5.0 213.0 1.0

C.Yang, K.Murakami. Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) To Be Published.