Magnesium in PDB 7mka: Structure of Ec+Ec (Leading Ec-Focused)

All present enzymatic activity of Structure of Ec+Ec (Leading Ec-Focused):
2.7.7.6;

The structure of Structure of Ec+Ec (Leading Ec-Focused) also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Structure of Ec+Ec (Leading Ec-Focused) (pdb code 7mka). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Ec+Ec (Leading Ec-Focused), PDB code: 7mka:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Ec+Ec (Leading Ec-Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ec+Ec (Leading Ec-Focused) within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1803 b:246.2 occ:1.00 OD2 a:ASP481 1.9 237.5 1.0 OP2 r:C48 2.0 261.5 1.0 OP1 r:C48 2.3 261.5 1.0 CG a:ASP481 2.3 237.5 1.0 CB a:ASP481 2.4 237.5 1.0 P r:C48 2.4 261.5 1.0 OD2 a:ASP483 2.4 233.5 1.0 OD1 a:ASP483 2.7 233.5 1.0 CG a:ASP483 2.8 233.5 1.0 OD2 a:ASP485 2.9 218.8 1.0 OD1 a:ASP485 3.0 218.8 1.0 O3' r:U47 3.1 251.9 1.0 CG a:ASP485 3.3 218.8 1.0 OD1 a:ASP481 3.4 237.5 1.0 CA a:ASP481 3.7 237.5 1.0 N a:ASP481 3.9 237.5 1.0 O5' r:C48 3.9 261.5 1.0 CB a:ASP483 4.2 233.5 1.0 C3' r:U47 4.4 251.9 1.0 C a:ASP481 4.5 237.5 1.0 N a:ASP483 4.7 233.5 1.0 C5' r:C48 4.7 261.5 1.0 CB a:ASP485 4.8 218.8 1.0 N a:PHE482 5.0 218.5 1.0 C4' r:U47 5.0 251.9 1.0

Magnesium binding site 2 out of 2 in the Structure of Ec+Ec (Leading Ec-Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Ec+Ec (Leading Ec-Focused) within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1804 b:208.5 occ:1.00 N a:THR1394 2.0 207.4 1.0 O a:THR1394 2.2 207.4 1.0 C a:THR1394 2.2 207.4 1.0 CA a:THR1394 2.4 207.4 1.0 C a:ASN1393 2.9 217.1 1.0 OD1 a:ASN1393 2.9 217.1 1.0 N a:GLY1395 3.2 206.9 1.0 CA a:ASN1393 3.6 217.1 1.0 O a:ASN1393 3.6 217.1 1.0 CG a:ASN1393 3.7 217.1 1.0 CB a:THR1394 3.9 207.4 1.0 CA a:GLY1395 4.1 206.9 1.0 CB a:ASN1393 4.2 217.1 1.0 OG1 a:THR1394 4.6 207.4 1.0 O a:SER1392 4.6 212.9 1.0 ND2 a:ASN1393 4.7 217.1 1.0 NH2 a:ARG1399 4.7 200.6 1.0 C a:GLY1395 4.7 206.9 1.0 CD1 a:LEU860 4.8 187.1 1.0 CG2 a:THR1394 4.8 207.4 1.0 NE a:ARG1399 4.9 200.6 1.0 N a:ASN1393 4.9 217.1 1.0 O a:GLY1395 4.9 206.9 1.0 CZ a:ARG1399 4.9 200.6 1.0

C.Yang, K.Murakami. Structure of Ec+Ec (Leading Ec-Focused) To Be Published.