Magnesium in PDB 7mnx: Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
Protein crystallography data
The structure of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp, PDB code: 7mnx
was solved by
C.J.Bley,
S.Nie,
G.W.Mobbs,
S.Petrovic,
A.T.Gres,
X.Liu,
S.Mukherjee,
S.Harvey,
F.M.Huber,
D.H.Lin,
B.Brown,
A.W.Tang,
E.J.Rundlet,
A.R.Correia,
S.Chen,
S.G.Regmi,
T.A.Stevens,
C.A.Jette,
M.Dasso,
A.Patke,
A.F.Palazzo,
A.A.Kossiakoff,
A.Hoelz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.82 /
2.40
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
94.173,
133.975,
182.516,
90,
90,
90
|
|
R / Rfree (%)
|
19.2 /
23
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
(pdb code 7mnx). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp, PDB code: 7mnx:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 7mnx
Go back to
Magnesium Binding Sites List in 7mnx
Magnesium binding site 1 out
of 6 in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg302
b:49.9
occ:1.00
|
OG1
|
A:THR42
|
2.0
|
53.7
|
1.0
|
|
O2B
|
A:GNP301
|
2.0
|
48.5
|
1.0
|
|
OG1
|
A:THR24
|
2.1
|
53.4
|
1.0
|
|
O
|
A:HOH508
|
2.1
|
49.5
|
1.0
|
|
O2G
|
A:GNP301
|
2.1
|
62.6
|
1.0
|
|
O
|
A:HOH501
|
2.2
|
46.3
|
1.0
|
|
HB
|
A:THR42
|
3.0
|
65.5
|
1.0
|
|
HB
|
A:THR24
|
3.0
|
57.9
|
1.0
|
|
CB
|
A:THR42
|
3.1
|
53.9
|
1.0
|
|
CB
|
A:THR24
|
3.1
|
51.5
|
1.0
|
|
H
|
A:THR42
|
3.1
|
70.5
|
1.0
|
|
H
|
A:THR24
|
3.2
|
61.5
|
1.0
|
|
PG
|
A:GNP301
|
3.3
|
57.0
|
1.0
|
|
PB
|
A:GNP301
|
3.3
|
47.8
|
1.0
|
|
N3B
|
A:GNP301
|
3.5
|
50.1
|
1.0
|
|
N
|
A:THR42
|
3.7
|
57.0
|
1.0
|
|
O3G
|
A:GNP301
|
3.8
|
52.0
|
1.0
|
|
N
|
A:THR24
|
3.9
|
52.2
|
1.0
|
|
OD2
|
A:ASP65
|
3.9
|
57.0
|
1.0
|
|
CA
|
A:THR42
|
4.0
|
60.1
|
1.0
|
|
HG21
|
A:THR24
|
4.0
|
57.2
|
1.0
|
|
HG21
|
A:THR42
|
4.0
|
75.8
|
1.0
|
|
HB2
|
A:LYS23
|
4.0
|
60.1
|
1.0
|
|
CA
|
A:THR24
|
4.1
|
52.9
|
1.0
|
|
HNB3
|
A:GNP301
|
4.1
|
60.3
|
1.0
|
|
CG2
|
A:THR42
|
4.2
|
59.1
|
1.0
|
|
CG2
|
A:THR24
|
4.2
|
51.6
|
1.0
|
|
O2A
|
A:GNP301
|
4.2
|
48.4
|
1.0
|
|
OD1
|
A:ASP65
|
4.2
|
59.1
|
1.0
|
|
HA
|
A:THR42
|
4.3
|
76.6
|
1.0
|
|
O3A
|
A:GNP301
|
4.4
|
54.4
|
1.0
|
|
HE2
|
A:LYS23
|
4.4
|
62.9
|
1.0
|
|
O1G
|
A:GNP301
|
4.4
|
71.4
|
1.0
|
|
O
|
A:THR66
|
4.4
|
58.5
|
1.0
|
|
HA
|
A:THR24
|
4.4
|
62.9
|
1.0
|
|
O1B
|
A:GNP301
|
4.5
|
45.7
|
1.0
|
|
O
|
A:HOH514
|
4.5
|
52.6
|
1.0
|
|
CG
|
A:ASP65
|
4.5
|
56.0
|
1.0
|
|
HA
|
A:ALA41
|
4.5
|
81.6
|
1.0
|
|
PA
|
A:GNP301
|
4.6
|
45.0
|
1.0
|
|
O1A
|
A:GNP301
|
4.6
|
61.4
|
1.0
|
|
HG23
|
A:THR42
|
4.6
|
75.8
|
1.0
|
|
HG23
|
A:THR24
|
4.7
|
57.2
|
1.0
|
|
O
|
A:VAL40
|
4.7
|
63.5
|
1.0
|
|
HA
|
A:ALA67
|
4.7
|
89.7
|
1.0
|
|
C
|
A:ALA41
|
4.8
|
63.3
|
1.0
|
|
HZ1
|
A:LYS23
|
4.8
|
77.1
|
1.0
|
|
HE1
|
A:TYR39
|
4.8
|
78.7
|
1.0
|
|
HZ2
|
A:LYS23
|
4.9
|
77.1
|
1.0
|
|
HG22
|
A:THR24
|
4.9
|
57.2
|
1.0
|
|
HG22
|
A:THR42
|
4.9
|
75.8
|
1.0
|
|
CB
|
A:LYS23
|
5.0
|
55.6
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 7mnx
Go back to
Magnesium Binding Sites List in 7mnx
Magnesium binding site 2 out
of 6 in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg302
b:43.4
occ:1.00
|
OG1
|
C:THR24
|
2.0
|
39.5
|
1.0
|
|
OG1
|
C:THR42
|
2.1
|
51.4
|
1.0
|
|
O
|
C:HOH413
|
2.1
|
40.5
|
1.0
|
|
O2G
|
C:GNP301
|
2.1
|
35.2
|
1.0
|
|
O2B
|
C:GNP301
|
2.2
|
43.5
|
1.0
|
|
O
|
C:HOH412
|
2.2
|
37.7
|
1.0
|
|
HB
|
C:THR24
|
3.0
|
50.2
|
1.0
|
|
CB
|
C:THR24
|
3.0
|
40.9
|
1.0
|
|
H
|
C:THR42
|
3.1
|
54.2
|
1.0
|
|
HB
|
C:THR42
|
3.1
|
68.2
|
1.0
|
|
CB
|
C:THR42
|
3.1
|
56.0
|
1.0
|
|
H
|
C:THR24
|
3.3
|
49.1
|
1.0
|
|
PG
|
C:GNP301
|
3.3
|
40.5
|
1.0
|
|
PB
|
C:GNP301
|
3.4
|
63.4
|
1.0
|
|
N3B
|
C:GNP301
|
3.5
|
51.6
|
1.0
|
|
N
|
C:THR42
|
3.7
|
50.2
|
1.0
|
|
N
|
C:THR24
|
3.8
|
39.7
|
1.0
|
|
OD2
|
C:ASP65
|
3.9
|
46.9
|
1.0
|
|
O3G
|
C:GNP301
|
3.9
|
41.5
|
1.0
|
|
HG21
|
C:THR24
|
3.9
|
49.5
|
1.0
|
|
HB2
|
C:LYS23
|
4.0
|
44.7
|
1.0
|
|
CA
|
C:THR42
|
4.0
|
52.1
|
1.0
|
|
CA
|
C:THR24
|
4.0
|
38.8
|
1.0
|
|
CG2
|
C:THR24
|
4.1
|
40.7
|
1.0
|
|
HNB3
|
C:GNP301
|
4.1
|
62.1
|
1.0
|
|
O
|
C:HOH407
|
4.2
|
48.2
|
1.0
|
|
HG21
|
C:THR42
|
4.2
|
62.9
|
1.0
|
|
O2A
|
C:GNP301
|
4.2
|
44.5
|
1.0
|
|
OD1
|
C:ASP65
|
4.2
|
51.3
|
1.0
|
|
CG2
|
C:THR42
|
4.3
|
53.5
|
1.0
|
|
HE2
|
C:LYS23
|
4.3
|
50.1
|
1.0
|
|
HA
|
C:THR42
|
4.3
|
58.7
|
1.0
|
|
HA
|
C:ALA41
|
4.4
|
56.4
|
1.0
|
|
HA
|
C:THR24
|
4.4
|
46.6
|
1.0
|
|
O3A
|
C:GNP301
|
4.4
|
42.3
|
1.0
|
|
O1G
|
C:GNP301
|
4.4
|
45.9
|
1.0
|
|
CG
|
C:ASP65
|
4.4
|
46.3
|
1.0
|
|
O
|
C:VAL40
|
4.5
|
48.0
|
1.0
|
|
O1B
|
C:GNP301
|
4.6
|
40.2
|
1.0
|
|
HE1
|
C:TYR39
|
4.6
|
73.9
|
1.0
|
|
HG23
|
C:THR24
|
4.6
|
49.5
|
1.0
|
|
O1A
|
C:GNP301
|
4.6
|
39.9
|
1.0
|
|
PA
|
C:GNP301
|
4.6
|
59.1
|
1.0
|
|
C
|
C:ALA41
|
4.7
|
49.3
|
1.0
|
|
O
|
C:THR66
|
4.7
|
42.4
|
1.0
|
|
HG23
|
C:THR42
|
4.7
|
62.9
|
1.0
|
|
HA
|
C:ALA67
|
4.8
|
68.3
|
1.0
|
|
HZ3
|
C:LYS23
|
4.8
|
47.7
|
1.0
|
|
HG22
|
C:THR24
|
4.8
|
49.5
|
1.0
|
|
CB
|
C:LYS23
|
4.9
|
38.0
|
1.0
|
|
HZ1
|
C:LYS23
|
4.9
|
47.7
|
1.0
|
|
O
|
C:HOH405
|
4.9
|
48.8
|
1.0
|
|
C
|
C:LYS23
|
4.9
|
39.2
|
1.0
|
|
HG22
|
C:THR42
|
5.0
|
62.9
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 7mnx
Go back to
Magnesium Binding Sites List in 7mnx
Magnesium binding site 3 out
of 6 in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg302
b:47.0
occ:1.00
|
O3G
|
E:GNP301
|
2.0
|
43.8
|
1.0
|
|
OG1
|
E:THR24
|
2.0
|
45.1
|
1.0
|
|
OG1
|
E:THR42
|
2.1
|
54.5
|
1.0
|
|
O
|
E:HOH404
|
2.1
|
43.5
|
1.0
|
|
O
|
E:HOH403
|
2.1
|
43.3
|
1.0
|
|
O1B
|
E:GNP301
|
2.2
|
41.7
|
1.0
|
|
H
|
E:THR42
|
2.9
|
67.0
|
1.0
|
|
HB
|
E:THR42
|
3.1
|
59.3
|
1.0
|
|
HB
|
E:THR24
|
3.1
|
57.2
|
1.0
|
|
CB
|
E:THR42
|
3.1
|
53.9
|
1.0
|
|
CB
|
E:THR24
|
3.1
|
47.7
|
1.0
|
|
PG
|
E:GNP301
|
3.2
|
43.7
|
1.0
|
|
H
|
E:THR24
|
3.2
|
53.2
|
1.0
|
|
PB
|
E:GNP301
|
3.3
|
40.5
|
1.0
|
|
N3B
|
E:GNP301
|
3.5
|
53.0
|
1.0
|
|
N
|
E:THR42
|
3.6
|
58.2
|
1.0
|
|
N
|
E:THR24
|
3.9
|
45.4
|
1.0
|
|
CA
|
E:THR42
|
3.9
|
55.1
|
1.0
|
|
OD2
|
E:ASP65
|
3.9
|
52.4
|
1.0
|
|
O2G
|
E:GNP301
|
4.0
|
44.8
|
1.0
|
|
HB2
|
E:LYS23
|
4.0
|
54.3
|
1.0
|
|
HG21
|
E:THR24
|
4.0
|
57.1
|
1.0
|
|
CA
|
E:THR24
|
4.1
|
45.3
|
1.0
|
|
HNB3
|
E:GNP301
|
4.2
|
63.7
|
1.0
|
|
CG2
|
E:THR24
|
4.2
|
47.7
|
1.0
|
|
O1A
|
E:GNP301
|
4.2
|
46.8
|
1.0
|
|
HG21
|
E:THR42
|
4.2
|
64.3
|
1.0
|
|
HA
|
E:ALA41
|
4.2
|
61.6
|
1.0
|
|
OD1
|
E:ASP65
|
4.2
|
53.2
|
1.0
|
|
HE2
|
E:LYS23
|
4.3
|
58.8
|
1.0
|
|
O3A
|
E:GNP301
|
4.3
|
37.6
|
1.0
|
|
CG2
|
E:THR42
|
4.3
|
56.4
|
1.0
|
|
HA
|
E:THR42
|
4.3
|
60.9
|
1.0
|
|
O2B
|
E:GNP301
|
4.4
|
41.7
|
1.0
|
|
HA
|
E:THR24
|
4.4
|
53.1
|
1.0
|
|
O1G
|
E:GNP301
|
4.4
|
51.8
|
1.0
|
|
O
|
E:VAL40
|
4.5
|
48.2
|
1.0
|
|
CG
|
E:ASP65
|
4.5
|
52.6
|
1.0
|
|
O2A
|
E:GNP301
|
4.5
|
42.3
|
1.0
|
|
PA
|
E:GNP301
|
4.5
|
44.2
|
1.0
|
|
O
|
E:THR66
|
4.6
|
53.5
|
1.0
|
|
C
|
E:ALA41
|
4.6
|
62.2
|
1.0
|
|
HG23
|
E:THR24
|
4.7
|
57.1
|
1.0
|
|
HG23
|
E:THR42
|
4.7
|
64.3
|
1.0
|
|
HA
|
E:ALA67
|
4.8
|
79.9
|
1.0
|
|
HE1
|
E:TYR39
|
4.9
|
69.8
|
1.0
|
|
CB
|
E:LYS23
|
4.9
|
48.4
|
1.0
|
|
HG22
|
E:THR24
|
4.9
|
57.1
|
1.0
|
|
CA
|
E:ALA41
|
4.9
|
61.7
|
1.0
|
|
HZ3
|
E:LYS23
|
4.9
|
51.5
|
1.0
|
|
HZ1
|
E:LYS23
|
5.0
|
51.5
|
1.0
|
|
C
|
E:LYS23
|
5.0
|
44.7
|
1.0
|
|
HG22
|
E:THR42
|
5.0
|
64.3
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 7mnx
Go back to
Magnesium Binding Sites List in 7mnx
Magnesium binding site 4 out
of 6 in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg302
b:43.5
occ:1.00
|
O2B
|
G:GNP301
|
2.0
|
38.6
|
1.0
|
|
OG1
|
G:THR24
|
2.1
|
42.4
|
1.0
|
|
OG1
|
G:THR42
|
2.1
|
51.5
|
1.0
|
|
O2G
|
G:GNP301
|
2.1
|
42.0
|
1.0
|
|
O
|
G:HOH501
|
2.1
|
43.1
|
1.0
|
|
O
|
G:HOH502
|
2.1
|
38.6
|
1.0
|
|
H
|
G:THR42
|
3.1
|
63.7
|
1.0
|
|
HB
|
G:THR24
|
3.1
|
49.6
|
1.0
|
|
HB
|
G:THR42
|
3.1
|
57.7
|
1.0
|
|
CB
|
G:THR42
|
3.1
|
49.1
|
1.0
|
|
CB
|
G:THR24
|
3.1
|
42.4
|
1.0
|
|
PG
|
G:GNP301
|
3.2
|
39.7
|
1.0
|
|
PB
|
G:GNP301
|
3.3
|
39.1
|
1.0
|
|
H
|
G:THR24
|
3.4
|
46.2
|
1.0
|
|
N3B
|
G:GNP301
|
3.5
|
64.6
|
1.0
|
|
N
|
G:THR42
|
3.7
|
53.4
|
1.0
|
|
O3G
|
G:GNP301
|
3.8
|
50.5
|
1.0
|
|
OD2
|
G:ASP65
|
3.9
|
53.3
|
1.0
|
|
HG21
|
G:THR24
|
4.0
|
48.6
|
1.0
|
|
CA
|
G:THR42
|
4.0
|
52.5
|
1.0
|
|
N
|
G:THR24
|
4.0
|
39.7
|
1.0
|
|
HB2
|
G:LYS23
|
4.0
|
55.0
|
1.0
|
|
CA
|
G:THR24
|
4.1
|
39.4
|
1.0
|
|
OD1
|
G:ASP65
|
4.2
|
56.8
|
1.0
|
|
CG2
|
G:THR24
|
4.2
|
41.9
|
1.0
|
|
HG21
|
G:THR42
|
4.2
|
77.4
|
1.0
|
|
HNB3
|
G:GNP301
|
4.2
|
77.7
|
1.0
|
|
HE2
|
G:LYS23
|
4.2
|
56.0
|
1.0
|
|
HA
|
G:ALA41
|
4.3
|
61.7
|
1.0
|
|
CG2
|
G:THR42
|
4.3
|
57.5
|
1.0
|
|
O2A
|
G:GNP301
|
4.3
|
39.7
|
1.0
|
|
HA
|
G:THR42
|
4.4
|
63.6
|
1.0
|
|
O3A
|
G:GNP301
|
4.4
|
49.3
|
1.0
|
|
CG
|
G:ASP65
|
4.4
|
57.6
|
1.0
|
|
O1G
|
G:GNP301
|
4.4
|
52.9
|
1.0
|
|
HA
|
G:THR24
|
4.5
|
46.1
|
1.0
|
|
O1B
|
G:GNP301
|
4.5
|
38.9
|
1.0
|
|
HA
|
G:ALA67
|
4.5
|
70.9
|
1.0
|
|
HE1
|
G:TYR39
|
4.5
|
62.4
|
1.0
|
|
O
|
G:VAL40
|
4.6
|
46.4
|
1.0
|
|
C
|
G:ALA41
|
4.7
|
51.1
|
1.0
|
|
HG23
|
G:THR24
|
4.7
|
48.6
|
1.0
|
|
HZ3
|
G:LYS23
|
4.7
|
58.9
|
1.0
|
|
PA
|
G:GNP301
|
4.7
|
58.4
|
1.0
|
|
HG23
|
G:THR42
|
4.7
|
77.4
|
1.0
|
|
O1A
|
G:GNP301
|
4.7
|
37.6
|
1.0
|
|
O
|
G:THR66
|
4.8
|
50.1
|
1.0
|
|
HZ2
|
G:LYS23
|
4.8
|
58.9
|
1.0
|
|
HG22
|
G:THR24
|
4.9
|
48.6
|
1.0
|
|
CB
|
G:LYS23
|
4.9
|
46.4
|
1.0
|
|
CA
|
G:ALA41
|
5.0
|
51.4
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 7mnx
Go back to
Magnesium Binding Sites List in 7mnx
Magnesium binding site 5 out
of 6 in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg302
b:42.3
occ:1.00
|
OG1
|
I:THR24
|
2.0
|
42.0
|
1.0
|
|
O
|
I:HOH405
|
2.0
|
37.8
|
1.0
|
|
OG1
|
I:THR42
|
2.1
|
41.6
|
1.0
|
|
O2B
|
I:GNP301
|
2.1
|
40.4
|
1.0
|
|
O2G
|
I:GNP301
|
2.2
|
37.4
|
1.0
|
|
O
|
I:HOH406
|
2.2
|
38.3
|
1.0
|
|
HB
|
I:THR42
|
3.1
|
49.7
|
1.0
|
|
CB
|
I:THR24
|
3.1
|
43.6
|
1.0
|
|
CB
|
I:THR42
|
3.1
|
42.0
|
1.0
|
|
HB
|
I:THR24
|
3.2
|
54.4
|
1.0
|
|
H
|
I:THR42
|
3.2
|
56.5
|
1.0
|
|
H
|
I:THR24
|
3.3
|
52.4
|
1.0
|
|
PG
|
I:GNP301
|
3.3
|
37.8
|
1.0
|
|
PB
|
I:GNP301
|
3.3
|
53.3
|
1.0
|
|
N3B
|
I:GNP301
|
3.5
|
49.6
|
1.0
|
|
N
|
I:THR42
|
3.7
|
46.7
|
1.0
|
|
N
|
I:THR24
|
3.9
|
42.1
|
1.0
|
|
O3G
|
I:GNP301
|
3.9
|
35.6
|
1.0
|
|
OD2
|
I:ASP65
|
4.0
|
46.0
|
1.0
|
|
HG21
|
I:THR24
|
4.0
|
49.4
|
1.0
|
|
CA
|
I:THR42
|
4.0
|
47.0
|
1.0
|
|
HB2
|
I:LYS23
|
4.0
|
50.5
|
1.0
|
|
CA
|
I:THR24
|
4.1
|
40.4
|
1.0
|
|
CG2
|
I:THR24
|
4.1
|
40.9
|
1.0
|
|
HG21
|
I:THR42
|
4.1
|
64.5
|
1.0
|
|
HNB3
|
I:GNP301
|
4.2
|
59.6
|
1.0
|
|
OD1
|
I:ASP65
|
4.2
|
49.4
|
1.0
|
|
HE2
|
I:LYS23
|
4.2
|
49.7
|
1.0
|
|
O
|
I:HOH403
|
4.2
|
39.0
|
1.0
|
|
CG2
|
I:THR42
|
4.3
|
48.3
|
1.0
|
|
HA
|
I:ALA41
|
4.3
|
54.5
|
1.0
|
|
O2A
|
I:GNP301
|
4.4
|
37.5
|
1.0
|
|
HA
|
I:THR42
|
4.4
|
59.0
|
1.0
|
|
O3A
|
I:GNP301
|
4.4
|
49.1
|
1.0
|
|
HA
|
I:THR24
|
4.4
|
49.3
|
1.0
|
|
CG
|
I:ASP65
|
4.5
|
44.7
|
1.0
|
|
O1G
|
I:GNP301
|
4.5
|
42.4
|
1.0
|
|
O1B
|
I:GNP301
|
4.5
|
40.6
|
1.0
|
|
HG23
|
I:THR24
|
4.6
|
49.4
|
1.0
|
|
O
|
I:VAL40
|
4.6
|
44.2
|
1.0
|
|
HA
|
I:ALA67
|
4.6
|
55.2
|
1.0
|
|
O
|
I:THR66
|
4.6
|
48.3
|
1.0
|
|
O1A
|
I:GNP301
|
4.7
|
41.0
|
1.0
|
|
C
|
I:ALA41
|
4.7
|
42.5
|
1.0
|
|
PA
|
I:GNP301
|
4.7
|
62.0
|
1.0
|
|
HG23
|
I:THR42
|
4.7
|
64.5
|
1.0
|
|
HZ3
|
I:LYS23
|
4.9
|
47.1
|
1.0
|
|
HG22
|
I:THR24
|
4.9
|
49.4
|
1.0
|
|
HZ1
|
I:LYS23
|
4.9
|
47.1
|
1.0
|
|
CB
|
I:LYS23
|
4.9
|
42.7
|
1.0
|
|
HG22
|
I:THR42
|
5.0
|
64.5
|
1.0
|
|
C
|
I:LYS23
|
5.0
|
42.2
|
1.0
|
|
HE1
|
I:TYR39
|
5.0
|
62.1
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 7mnx
Go back to
Magnesium Binding Sites List in 7mnx
Magnesium binding site 6 out
of 6 in the Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of NUP358/RANBP2 Ran-Binding Domain 2 in Complex with Ran-Gppnhp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg302
b:48.7
occ:1.00
|
OG1
|
K:THR42
|
1.9
|
53.1
|
1.0
|
|
O2B
|
K:GNP301
|
2.0
|
45.8
|
1.0
|
|
O
|
K:HOH406
|
2.0
|
45.3
|
1.0
|
|
OG1
|
K:THR24
|
2.0
|
48.1
|
1.0
|
|
O
|
K:HOH405
|
2.1
|
44.3
|
1.0
|
|
O2G
|
K:GNP301
|
2.2
|
57.7
|
1.0
|
|
HB
|
K:THR42
|
2.9
|
66.7
|
1.0
|
|
CB
|
K:THR42
|
3.0
|
54.8
|
1.0
|
|
H
|
K:THR42
|
3.0
|
70.3
|
1.0
|
|
HB
|
K:THR24
|
3.1
|
63.7
|
1.0
|
|
CB
|
K:THR24
|
3.1
|
50.0
|
1.0
|
|
H
|
K:THR24
|
3.2
|
56.1
|
1.0
|
|
PB
|
K:GNP301
|
3.3
|
49.6
|
1.0
|
|
PG
|
K:GNP301
|
3.3
|
49.9
|
1.0
|
|
N3B
|
K:GNP301
|
3.4
|
53.5
|
1.0
|
|
N
|
K:THR42
|
3.6
|
57.1
|
1.0
|
|
CA
|
K:THR42
|
3.9
|
58.8
|
1.0
|
|
N
|
K:THR24
|
3.9
|
45.4
|
1.0
|
|
O3G
|
K:GNP301
|
3.9
|
51.5
|
1.0
|
|
OD2
|
K:ASP65
|
4.0
|
52.8
|
1.0
|
|
HG21
|
K:THR24
|
4.0
|
56.5
|
1.0
|
|
HG21
|
K:THR42
|
4.0
|
66.6
|
1.0
|
|
HB2
|
K:LYS23
|
4.0
|
60.9
|
1.0
|
|
HNB3
|
K:GNP301
|
4.1
|
64.4
|
1.0
|
|
CA
|
K:THR24
|
4.1
|
45.7
|
1.0
|
|
CG2
|
K:THR42
|
4.1
|
55.3
|
1.0
|
|
O2A
|
K:GNP301
|
4.2
|
45.2
|
1.0
|
|
CG2
|
K:THR24
|
4.2
|
46.9
|
1.0
|
|
OD1
|
K:ASP65
|
4.2
|
57.3
|
1.0
|
|
HA
|
K:THR42
|
4.2
|
73.1
|
1.0
|
|
HE2
|
K:LYS23
|
4.3
|
61.0
|
1.0
|
|
O3A
|
K:GNP301
|
4.4
|
52.6
|
1.0
|
|
O1B
|
K:GNP301
|
4.4
|
44.9
|
1.0
|
|
O1G
|
K:GNP301
|
4.4
|
64.8
|
1.0
|
|
HA
|
K:ALA41
|
4.4
|
83.0
|
1.0
|
|
HA
|
K:THR24
|
4.4
|
56.7
|
1.0
|
|
O
|
K:VAL40
|
4.5
|
59.5
|
1.0
|
|
CG
|
K:ASP65
|
4.5
|
51.9
|
1.0
|
|
O
|
K:HOH419
|
4.5
|
49.6
|
1.0
|
|
HG23
|
K:THR42
|
4.6
|
66.6
|
1.0
|
|
O
|
K:THR66
|
4.6
|
52.2
|
1.0
|
|
PA
|
K:GNP301
|
4.6
|
47.2
|
1.0
|
|
O1A
|
K:GNP301
|
4.7
|
49.2
|
1.0
|
|
HG23
|
K:THR24
|
4.7
|
56.5
|
1.0
|
|
C
|
K:ALA41
|
4.7
|
56.8
|
1.0
|
|
HA
|
K:ALA67
|
4.7
|
88.4
|
1.0
|
|
HG22
|
K:THR42
|
4.8
|
66.6
|
1.0
|
|
HZ3
|
K:LYS23
|
4.8
|
63.9
|
1.0
|
|
HZ1
|
K:LYS23
|
4.8
|
63.9
|
1.0
|
|
HG22
|
K:THR24
|
4.9
|
56.5
|
1.0
|
|
CB
|
K:LYS23
|
4.9
|
54.1
|
1.0
|
|
HE1
|
K:TYR39
|
4.9
|
80.3
|
1.0
|
|
Reference:
C.J.Bley,
S.Nie,
G.W.Mobbs,
S.Petrovic,
A.T.Gres,
X.Liu,
S.Mukherjee,
S.Harvey,
F.M.Huber,
D.H.Lin,
B.Brown,
A.W.Tang,
E.J.Rundlet,
A.R.Correia,
S.Chen,
S.G.Regmi,
T.A.Stevens,
C.A.Jette,
M.Dasso,
A.Patke,
A.F.Palazzo,
A.A.Kossiakoff,
A.Hoelz.
Architecture of the Cytoplasmic Face of the Nuclear Pore. Science V. 376 M9129 2022.
ISSN: ESSN 1095-9203
PubMed: 35679405
DOI: 10.1126/SCIENCE.ABM9129
Page generated: Thu Apr 6 17:35:00 2023
|
