Magnesium in PDB 7n0c: Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex

The structure of Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex (pdb code 7n0c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex, PDB code: 7n0c:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:68.8 occ:1.00 OD2 B:ASP90 2.2 55.6 1.0 OE2 B:GLU92 2.3 49.8 1.0 OD1 B:ASP273 2.4 53.1 1.0 OP1 D:C71 2.4 57.9 1.0 MG B:MG602 3.1 70.8 1.0 CG B:ASP90 3.4 55.6 1.0 P D:C71 3.4 57.9 1.0 CG B:ASP273 3.4 53.1 1.0 CD B:GLU92 3.5 49.8 1.0 OP2 D:C71 3.6 57.9 1.0 ND1 B:HIS268 3.8 60.7 1.0 CB B:ASP273 3.9 53.1 1.0 OD1 B:ASP90 3.9 55.6 1.0 OE1 B:GLU92 4.0 49.8 1.0 CA B:HIS268 4.2 60.7 1.0 O5' D:C71 4.3 57.9 1.0 CE1 B:HIS268 4.4 60.7 1.0 OD2 B:ASP273 4.5 53.1 1.0 CB B:ASP90 4.6 55.6 1.0 CG B:GLU92 4.6 49.8 1.0 CG B:HIS268 4.7 60.7 1.0 O3' D:C70 4.7 62.0 1.0 N B:HIS268 4.7 60.7 1.0 C B:HIS268 4.8 60.7 1.0 O B:VAL91 4.9 64.0 1.0 CB B:HIS268 5.0 60.7 1.0 C5' D:C71 5.0 57.9 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Monomeric Form of Sars-Cov-2 NSP10-NSP14 (E191A)-Rna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:70.8 occ:1.00 OD1 B:ASP90 2.2 55.6 1.0 OP1 D:C71 2.3 57.9 1.0 OD2 B:ASP90 2.7 55.6 1.0 CG B:ASP90 2.8 55.6 1.0 P D:C71 3.1 57.9 1.0 MG B:MG601 3.1 68.8 1.0 O3' D:C70 3.1 62.0 1.0 OP2 D:C71 3.6 57.9 1.0 O B:HOH701 3.9 37.6 1.0 CB B:ASP90 4.3 55.6 1.0 CD1 B:TRP186 4.3 53.2 1.0 C3' D:C70 4.4 62.0 1.0 O5' D:C71 4.5 57.9 1.0 OD1 B:ASP273 4.5 53.1 1.0 CB B:TRP186 4.6 53.2 1.0 C5' D:C70 4.7 62.0 1.0 C4' D:C70 4.8 62.0 1.0 OE2 B:GLU92 4.8 49.8 1.0 CG B:TRP186 4.8 53.2 1.0 CB B:ASP273 4.9 53.1 1.0 CA B:ASP90 4.9 55.6 1.0

C.Liu, W.Shi, S.T.Becker, D.G.Schatz, B.Liu, Y.Yang. Structural Basis of Mismatch Recognition By A Sars-Cov-2 Proofreading Enzyme Science 2021.
ISSN: ESSN 1095-9203