Magnesium in PDB 7n0i: Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2

Protein crystallography data

The structure of Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2, PDB code: 7n0i was solved by Q.Ye, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.69 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.846, 131.557, 140.048, 90, 90, 90
R / Rfree (%) 23.9 / 27.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2 (pdb code 7n0i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2, PDB code: 7n0i:

Magnesium binding site 1 out of 1 in 7n0i

Go back to Magnesium Binding Sites List in 7n0i
Magnesium binding site 1 out of 1 in the Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:31.1
occ:1.00
O D:HOH545 2.2 19.7 1.0
O D:HOH559 2.4 35.0 1.0
O D:HOH552 2.6 40.2 1.0
O D:ALA308 2.7 10.4 1.0
O D:GLN306 2.7 25.6 1.0
OD2 L:ASP111 3.3 45.4 1.0
C D:GLN306 3.5 14.6 1.0
C D:ALA308 3.9 13.9 1.0
O D:ALA305 3.9 18.0 1.0
CA D:GLN306 4.1 21.5 1.0
O L:HOH266 4.1 21.3 1.0
N D:ALA308 4.2 11.6 1.0
CB L:ASP111 4.2 17.3 1.0
CG L:ASP111 4.2 32.6 1.0
N D:PHE307 4.4 14.8 1.0
O D:HOH557 4.5 29.4 1.0
C D:PHE307 4.5 21.1 1.0
CA D:ALA308 4.6 17.1 1.0
O D:HOH573 4.6 24.3 1.0
O D:HOH549 4.7 23.7 1.0
CA D:PHE307 4.8 14.5 1.0
O D:HOH575 4.8 45.2 1.0
C D:ALA305 4.9 15.2 1.0
N D:PRO309 4.9 14.5 1.0
N D:GLN306 5.0 20.2 1.0
CB D:ALA308 5.0 10.9 1.0

Reference:

Q.Ye, S.Lu, K.D.Corbett. Structure of the Sars-Cov-2 N Protein C-Terminal Domain Bound to Single-Domain Antibody E2 To Be Published.
Page generated: Mon Jul 12 14:31:05 2021

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