Magnesium in PDB 7nba: Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule.

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule. (pdb code 7nba). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule., PDB code: 7nba:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7nba

Go back to Magnesium Binding Sites List in 7nba
Magnesium binding site 1 out of 3 in the Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:14.7
occ:1.00
O1B A:GTP500 1.9 20.0 1.0
OE2 A:GLU71 2.0 69.6 1.0
O1G A:GTP500 2.2 20.0 1.0
CD A:GLU71 2.4 69.6 1.0
OE1 A:GLU71 2.5 69.6 1.0
HB2 A:GLN11 3.0 69.6 1.0
PB A:GTP500 3.1 20.0 1.0
PG A:GTP500 3.3 20.0 1.0
H A:GLN11 3.3 69.6 1.0
HG3 A:GLU71 3.5 69.6 1.0
CG A:GLU71 3.5 69.6 1.0
O3B A:GTP500 3.6 20.0 1.0
O2G A:GTP500 3.7 20.0 1.0
O3A A:GTP500 3.7 20.0 1.0
HB3 A:GLN11 3.8 69.6 1.0
HG21 A:VAL74 3.9 69.6 1.0
CB A:GLN11 3.9 69.6 1.0
OD2 A:ASP69 4.0 69.6 1.0
HB2 A:GLU71 4.1 69.6 1.0
HZ2 B:LYS252 4.1 69.6 1.0
HB2 B:ASN247 4.2 69.6 1.0
N A:GLN11 4.2 69.6 1.0
HG2 A:GLU71 4.3 69.6 1.0
HG23 A:VAL74 4.3 69.6 1.0
O2B A:GTP500 4.4 20.0 1.0
O1A A:GTP500 4.4 20.0 1.0
CB A:GLU71 4.4 69.6 1.0
HG1 A:THR145 4.4 69.6 1.0
OD1 A:ASP69 4.5 69.6 1.0
OE1 A:GLN11 4.5 69.6 1.0
CG2 A:VAL74 4.5 69.6 1.0
PA A:GTP500 4.6 20.0 1.0
O3G A:GTP500 4.6 20.0 1.0
CA A:GLN11 4.6 69.6 1.0
CG A:ASP69 4.7 69.6 1.0
HG22 A:VAL74 4.7 69.6 1.0
HB3 A:GLU71 4.7 69.6 1.0
HD2 B:LYS252 4.8 69.6 1.0
OG1 A:THR145 4.9 69.6 1.0
HA2 A:GLY10 4.9 69.6 1.0
HB2 A:ASP98 4.9 69.6 1.0

Magnesium binding site 2 out of 3 in 7nba

Go back to Magnesium Binding Sites List in 7nba
Magnesium binding site 2 out of 3 in the Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:31.4
occ:1.00
OE2 B:GLU69 1.9 69.6 1.0
OE1 B:GLU69 2.0 69.6 1.0
CD B:GLU69 2.3 69.6 1.0
O2B B:G2P600 2.3 20.0 1.0
OE1 B:GLN11 2.4 69.6 1.0
O2G B:G2P600 2.5 20.0 1.0
CD B:GLN11 3.1 69.6 1.0
HG3 B:GLN11 3.1 69.6 1.0
HB2 B:GLN11 3.3 69.6 1.0
PG B:G2P600 3.5 20.0 1.0
CG B:GLN11 3.5 69.6 1.0
O1G B:G2P600 3.7 20.0 1.0
PB B:G2P600 3.7 20.0 1.0
HG1 B:THR72 3.7 69.6 1.0
CG B:GLU69 3.8 69.6 1.0
O3B B:G2P600 3.9 20.0 1.0
CB B:GLN11 4.0 69.6 1.0
H B:GLN11 4.1 69.6 1.0
NE2 B:GLN11 4.1 69.6 1.0
HG3 B:GLU69 4.1 69.6 1.0
OD2 B:ASP67 4.2 69.6 1.0
HE21 B:GLN11 4.3 69.6 1.0
O2A B:G2P600 4.4 20.0 1.0
HG2 B:GLU69 4.4 69.6 1.0
OG1 B:THR72 4.5 69.6 1.0
HG2 B:GLN11 4.6 69.6 1.0
C3A B:G2P600 4.6 20.0 1.0
HB2 B:GLU69 4.6 69.6 1.0
HB3 B:GLN11 4.7 69.6 1.0
CB B:GLU69 4.8 69.6 1.0
HE22 B:GLN11 4.8 69.6 1.0
N B:GLN11 4.8 69.6 1.0
O1B B:G2P600 4.9 20.0 1.0
HB3 B:GLU69 4.9 69.6 1.0
O3G B:G2P600 4.9 20.0 1.0

Magnesium binding site 3 out of 3 in 7nba

Go back to Magnesium Binding Sites List in 7nba
Magnesium binding site 3 out of 3 in the Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Plasmodium Falciparum Kinesin-5 Motor Domain Bound to Amppnp, Complexed with 14 Protofilament Microtubule. within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg701

b:19.6
occ:1.00
O3G K:ANP700 1.9 69.6 1.0
OG1 K:THR113 1.9 69.6 1.0
OG K:SER266 2.2 69.6 1.0
O K:LYS264 2.2 69.6 1.0
O2B K:ANP700 2.3 69.6 1.0
HG1 K:THR113 2.5 69.6 1.0
HG K:SER266 2.8 69.6 1.0
CB K:THR113 3.0 69.6 1.0
HB K:THR113 3.1 69.6 1.0
PG K:ANP700 3.3 69.6 1.0
CB K:SER266 3.3 69.6 1.0
HG21 K:THR113 3.3 69.6 1.0
H K:SER266 3.4 69.6 1.0
N K:SER266 3.4 69.6 1.0
HB2 K:SER266 3.4 69.6 1.0
C K:LYS264 3.5 69.6 1.0
PB K:ANP700 3.5 69.6 1.0
CG2 K:THR113 3.7 69.6 1.0
HA K:SER265 3.7 0.0 1.0
C K:SER265 3.8 0.0 1.0
O1G K:ANP700 3.8 69.6 1.0
N3B K:ANP700 3.8 69.6 1.0
CA K:SER266 3.9 69.6 1.0
OD2 K:ASP298 3.9 69.6 1.0
HG23 K:THR113 4.1 69.6 1.0
CA K:SER265 4.1 0.0 1.0
HA K:SER266 4.1 69.6 1.0
HB2 K:LYS264 4.2 69.6 1.0
HB3 K:SER266 4.2 69.6 1.0
N K:SER265 4.2 0.0 1.0
H K:THR113 4.3 69.6 1.0
O1A K:ANP700 4.3 69.6 1.0
HB3 K:LYS264 4.3 69.6 1.0
CA K:THR113 4.3 69.6 1.0
O2G K:ANP700 4.4 69.6 1.0
O K:SER265 4.4 0.0 1.0
O3A K:ANP700 4.5 69.6 1.0
O1B K:ANP700 4.6 69.6 1.0
CB K:LYS264 4.6 69.6 1.0
HG22 K:THR113 4.6 69.6 1.0
HA K:THR113 4.7 69.6 1.0
CA K:LYS264 4.7 69.6 1.0
N K:THR113 4.7 69.6 1.0
PA K:ANP700 4.7 69.6 1.0
HZ2 K:LYS112 4.8 69.6 1.0
CG K:ASP298 4.9 69.6 1.0
OD1 K:ASP298 4.9 69.6 1.0

Reference:

A.D.Cook, A.J.Roberts, J.Atherton, R.Tewari, M.Topf, C.A.Moores. Cryo-Em Structure of A Microtubule-Bound Parasite Kinesin Motor and Implications For Its Mechanism and Inhibition. J.Biol.Chem. 01063 2021.
ISSN: ESSN 1083-351X
PubMed: 34375637
DOI: 10.1016/J.JBC.2021.101063
Page generated: Fri Nov 5 15:23:59 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy