Magnesium in PDB 7ng5: P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix

Enzymatic activity of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix

All present enzymatic activity of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix (pdb code 7ng5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix, PDB code: 7ng5:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7ng5

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Magnesium binding site 1 out of 5 in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:48.2
occ:1.00
OG1 A:THR530 2.1 53.7 1.0
O2G A:ATP1001 2.1 74.8 1.0
O1B A:ATP1001 2.1 74.8 1.0
HB A:THR530 3.0 53.7 1.0
PG A:ATP1001 3.0 74.8 1.0
CB A:THR530 3.1 53.7 1.0
O1G A:ATP1001 3.3 74.8 1.0
PB A:ATP1001 3.3 74.8 1.0
O3B A:ATP1001 3.4 74.8 1.0
OE1 A:GLU591 3.7 53.6 1.0
HG21 A:THR530 3.8 53.7 1.0
H A:THR530 3.9 53.7 1.0
CG2 A:THR530 4.0 53.7 1.0
HB2 A:LYS529 4.1 48.2 1.0
N A:THR530 4.2 53.7 1.0
CA A:THR530 4.2 53.7 1.0
OD1 A:ASP590 4.2 52.9 1.0
O3A A:ATP1001 4.3 74.8 1.0
HZ2 A:LYS529 4.3 48.2 1.0
HG1 A:THR638 4.3 50.5 1.0
HH22 B:ARG652 4.4 57.7 1.0
HH12 B:ARG652 4.4 57.7 1.0
O3G A:ATP1001 4.4 74.8 1.0
O1A A:ATP1001 4.5 74.8 1.0
O2B A:ATP1001 4.5 74.8 1.0
HA A:THR530 4.5 53.7 1.0
OD2 A:ASP590 4.5 52.9 1.0
HE2 A:LYS529 4.5 48.2 1.0
O2A A:ATP1001 4.5 74.8 1.0
HG21 A:THR638 4.6 50.5 1.0
PA A:ATP1001 4.6 74.8 1.0
HG23 A:THR530 4.6 53.7 1.0
HZ3 A:LYS529 4.6 48.2 1.0
HG22 A:THR530 4.7 53.7 1.0
CG A:ASP590 4.8 52.9 1.0
NZ A:LYS529 4.8 48.2 1.0
CD A:GLU591 4.9 53.6 1.0
HB A:THR638 5.0 50.5 1.0
C A:LYS529 5.0 48.2 1.0

Magnesium binding site 2 out of 5 in 7ng5

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Magnesium binding site 2 out of 5 in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:82.5
occ:1.00
OG1 B:THR530 2.1 57.2 1.0
O2G B:ATP1001 2.1 82.5 1.0
O1B B:ATP1001 2.1 82.5 1.0
PG B:ATP1001 2.9 82.5 1.0
O1G B:ATP1001 3.0 82.5 1.0
HB B:THR530 3.0 57.2 1.0
CB B:THR530 3.1 57.2 1.0
PB B:ATP1001 3.3 82.5 1.0
O3B B:ATP1001 3.5 82.5 1.0
HG21 B:THR530 3.6 57.2 1.0
O1A B:ATP1001 3.7 82.5 1.0
HH22 C:ARG652 3.9 56.8 1.0
CG2 B:THR530 3.9 57.2 1.0
H B:THR530 4.0 57.2 1.0
HZ3 B:LYS529 4.1 61.8 1.0
O3A B:ATP1001 4.2 82.5 1.0
PA B:ATP1001 4.2 82.5 1.0
HB2 B:LYS529 4.2 61.8 1.0
HZ1 B:LYS529 4.3 61.8 1.0
CA B:THR530 4.3 57.2 1.0
N B:THR530 4.3 57.2 1.0
O3G B:ATP1001 4.3 82.5 1.0
O2A B:ATP1001 4.3 82.5 1.0
HE2 B:LYS529 4.5 61.8 1.0
HG1 B:THR638 4.5 57.5 1.0
O2B B:ATP1001 4.6 82.5 1.0
NZ B:LYS529 4.6 61.8 1.0
HG23 B:THR530 4.6 57.2 1.0
HG22 B:THR530 4.6 57.2 1.0
HA B:THR530 4.6 57.2 1.0
NH2 C:ARG652 4.6 56.8 1.0
HG21 B:THR638 4.7 57.5 1.0
OD2 B:ASP590 4.7 54.4 1.0
OD1 B:ASP590 4.7 54.4 1.0
HH21 C:ARG652 4.9 56.8 1.0

Magnesium binding site 3 out of 5 in 7ng5

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Magnesium binding site 3 out of 5 in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:49.1
occ:1.00
OG1 C:THR530 2.1 45.1 1.0
O2G C:ATP1001 2.1 61.6 1.0
O1B C:ATP1001 2.1 61.6 1.0
O1G C:ATP1001 2.8 61.6 1.0
PG C:ATP1001 2.8 61.6 1.0
HB C:THR530 3.0 45.1 1.0
CB C:THR530 3.1 45.1 1.0
PB C:ATP1001 3.3 61.6 1.0
O3B C:ATP1001 3.4 61.6 1.0
O1A C:ATP1001 3.5 61.6 1.0
HG21 C:THR530 3.7 45.1 1.0
H C:THR530 3.8 45.1 1.0
HZ3 C:LYS529 3.8 45.2 1.0
CG2 C:THR530 4.0 45.1 1.0
N C:THR530 4.1 45.1 1.0
PA C:ATP1001 4.2 61.6 1.0
O3A C:ATP1001 4.2 61.6 1.0
CA C:THR530 4.2 45.1 1.0
HZ2 C:LYS529 4.2 45.2 1.0
O3G C:ATP1001 4.2 61.6 1.0
O2A C:ATP1001 4.3 61.6 1.0
HB2 C:LYS529 4.3 45.2 1.0
HH22 D:ARG652 4.4 55.6 1.0
NZ C:LYS529 4.4 45.2 1.0
HG23 C:THR530 4.5 45.1 1.0
O2B C:ATP1001 4.5 61.6 1.0
HA C:THR530 4.7 45.1 1.0
HG22 C:THR530 4.7 45.1 1.0
HG1 C:THR638 4.7 52.1 1.0
HE2 C:LYS529 4.8 45.2 1.0
OD1 C:ASP590 4.9 56.2 1.0
HE22 D:GLN615 4.9 57.5 1.0
OD2 C:ASP590 4.9 56.2 1.0
OD2 D:ASP612 5.0 58.6 1.0

Magnesium binding site 4 out of 5 in 7ng5

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Magnesium binding site 4 out of 5 in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1002

b:58.1
occ:1.00
OG1 E:THR530 2.1 60.1 1.0
O1B E:ATP1001 2.1 63.6 1.0
O2G E:ATP1001 2.1 63.6 1.0
O3G E:ATP1001 2.9 63.6 1.0
PG E:ATP1001 2.9 63.6 1.0
CB E:THR530 3.2 60.1 1.0
O1A E:ATP1001 3.3 63.6 1.0
HB E:THR530 3.3 60.1 1.0
PB E:ATP1001 3.3 63.6 1.0
O3B E:ATP1001 3.4 63.6 1.0
HG21 E:THR530 3.8 60.1 1.0
H E:THR530 3.9 60.1 1.0
PA E:ATP1001 4.0 63.6 1.0
O2A E:ATP1001 4.1 63.6 1.0
CG2 E:THR530 4.1 60.1 1.0
HZ3 E:LYS529 4.2 62.0 1.0
O3A E:ATP1001 4.3 63.6 1.0
CA E:THR530 4.3 60.1 1.0
N E:THR530 4.3 60.1 1.0
O1G E:ATP1001 4.3 63.6 1.0
HZ1 E:LYS529 4.3 62.0 1.0
O2B E:ATP1001 4.5 63.6 1.0
HA E:THR530 4.5 60.1 1.0
HG23 E:THR530 4.5 60.1 1.0
HB2 E:LYS529 4.6 62.0 1.0
HH12 E:ARG546 4.6 80.1 1.0
NZ E:LYS529 4.7 62.0 1.0
HG22 E:THR530 4.9 60.1 1.0
HG1 E:THR638 4.9 73.4 1.0
HE2 E:LYS529 4.9 62.0 1.0

Magnesium binding site 5 out of 5 in 7ng5

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Magnesium binding site 5 out of 5 in the P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:97.7
occ:1.00
OG1 F:THR530 2.1 75.3 1.0
O1B F:ATP1001 2.1 81.8 1.0
O2G F:ATP1001 2.1 81.8 1.0
PG F:ATP1001 3.1 81.8 1.0
PB F:ATP1001 3.2 81.8 1.0
O3B F:ATP1001 3.3 81.8 1.0
O1G F:ATP1001 3.3 81.8 1.0
O1A F:ATP1001 3.3 81.8 1.0
CB F:THR530 3.4 75.3 1.0
H F:THR530 3.5 75.3 1.0
HB F:THR530 3.7 75.3 1.0
PA F:ATP1001 3.9 81.8 1.0
OD2 F:ASP590 4.0 97.1 1.0
O3A F:ATP1001 4.0 81.8 1.0
HG21 F:THR530 4.0 75.3 1.0
O2A F:ATP1001 4.1 81.8 1.0
N F:THR530 4.2 75.3 1.0
CG2 F:THR530 4.2 75.3 1.0
CA F:THR530 4.4 75.3 1.0
HB2 F:LYS529 4.4 76.3 1.0
HG23 F:THR530 4.4 75.3 1.0
HE2 F:LYS529 4.4 76.3 1.0
O3G F:ATP1001 4.5 81.8 1.0
O2B F:ATP1001 4.5 81.8 1.0
HA F:THR530 4.7 75.3 1.0
HH22 F:ARG546 4.7 84.2 1.0
NH2 F:ARG546 4.8 84.2 1.0
HH12 F:ARG546 4.9 84.2 1.0
CZ F:ARG546 4.9 84.2 1.0
CG F:ASP590 4.9 97.1 1.0
NH1 F:ARG546 4.9 84.2 1.0
H F:LYS529 5.0 76.3 1.0

Reference:

I.Mohammed, K.A.Schmitz, N.Schenck, T.Maier, J.P.Abrahams. P1C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein in Presence of Atp/Adp Mix To Be Published.
Page generated: Wed Mar 3 15:04:46 2021

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