Magnesium in PDB 7ngc: P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
Enzymatic activity of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
All present enzymatic activity of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs:
3.4.21.53;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
(pdb code 7ngc). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs, PDB code: 7ngc:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 7ngc
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Magnesium Binding Sites List in 7ngc
Magnesium binding site 1 out
of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1002
b:199.6
occ:1.00
|
OG1
|
A:THR530
|
2.1
|
220.2
|
1.0
|
O1B
|
A:AGS1001
|
2.1
|
224.5
|
1.0
|
O2G
|
A:AGS1001
|
2.1
|
224.5
|
1.0
|
S1G
|
A:AGS1001
|
2.9
|
224.5
|
1.0
|
PG
|
A:AGS1001
|
2.9
|
224.5
|
1.0
|
HB
|
A:THR530
|
2.9
|
220.2
|
1.0
|
CB
|
A:THR530
|
3.0
|
220.2
|
1.0
|
PB
|
A:AGS1001
|
3.2
|
224.5
|
1.0
|
O1A
|
A:AGS1001
|
3.3
|
224.5
|
1.0
|
H
|
A:THR530
|
3.5
|
220.2
|
1.0
|
O3B
|
A:AGS1001
|
3.5
|
224.5
|
1.0
|
HG21
|
A:THR530
|
3.6
|
220.2
|
1.0
|
OE2
|
A:GLU591
|
3.8
|
220.3
|
1.0
|
CG2
|
A:THR530
|
3.9
|
220.2
|
1.0
|
PA
|
A:AGS1001
|
4.0
|
224.5
|
1.0
|
O3A
|
A:AGS1001
|
4.0
|
224.5
|
1.0
|
HH22
|
B:ARG652
|
4.1
|
220.7
|
1.0
|
N
|
A:THR530
|
4.1
|
220.2
|
1.0
|
HZ3
|
A:LYS529
|
4.2
|
211.6
|
1.0
|
CA
|
A:THR530
|
4.2
|
220.2
|
1.0
|
O2A
|
A:AGS1001
|
4.2
|
224.5
|
1.0
|
O3G
|
A:AGS1001
|
4.2
|
224.5
|
1.0
|
HH22
|
A:ARG710
|
4.3
|
210.1
|
1.0
|
HZ1
|
A:LYS529
|
4.4
|
211.6
|
1.0
|
O2B
|
A:AGS1001
|
4.5
|
224.5
|
1.0
|
HB2
|
A:LYS529
|
4.5
|
211.6
|
1.0
|
HG23
|
A:THR530
|
4.5
|
220.2
|
1.0
|
HG1
|
A:THR638
|
4.5
|
197.6
|
1.0
|
HG22
|
A:THR530
|
4.6
|
220.2
|
1.0
|
HA
|
A:THR530
|
4.6
|
220.2
|
1.0
|
NZ
|
A:LYS529
|
4.7
|
211.6
|
1.0
|
NH2
|
A:ARG710
|
4.8
|
210.1
|
1.0
|
HH21
|
A:ARG710
|
4.8
|
210.1
|
1.0
|
HE2
|
A:LYS529
|
4.8
|
211.6
|
1.0
|
NH2
|
B:ARG652
|
4.9
|
220.7
|
1.0
|
CD
|
A:GLU591
|
4.9
|
220.3
|
1.0
|
OD1
|
A:ASP590
|
4.9
|
210.2
|
1.0
|
OD2
|
A:ASP590
|
5.0
|
210.2
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 7ngc
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Magnesium Binding Sites List in 7ngc
Magnesium binding site 2 out
of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:217.7
occ:1.00
|
OG1
|
B:THR530
|
2.1
|
183.6
|
1.0
|
O2G
|
B:AGS1001
|
2.1
|
207.6
|
1.0
|
O1B
|
B:AGS1001
|
2.1
|
207.6
|
1.0
|
S1G
|
B:AGS1001
|
2.7
|
207.6
|
1.0
|
PG
|
B:AGS1001
|
2.7
|
207.6
|
1.0
|
HB
|
B:THR530
|
2.8
|
183.6
|
1.0
|
CB
|
B:THR530
|
3.0
|
183.6
|
1.0
|
O1A
|
B:AGS1001
|
3.1
|
207.6
|
1.0
|
PB
|
B:AGS1001
|
3.3
|
207.6
|
1.0
|
H
|
B:THR530
|
3.4
|
183.6
|
1.0
|
O3B
|
B:AGS1001
|
3.4
|
207.6
|
1.0
|
HG21
|
B:THR530
|
3.6
|
183.6
|
1.0
|
PA
|
B:AGS1001
|
3.9
|
207.6
|
1.0
|
CG2
|
B:THR530
|
3.9
|
183.6
|
1.0
|
O2A
|
B:AGS1001
|
3.9
|
207.6
|
1.0
|
N
|
B:THR530
|
4.1
|
183.6
|
1.0
|
O3A
|
B:AGS1001
|
4.1
|
207.6
|
1.0
|
O3G
|
B:AGS1001
|
4.1
|
207.6
|
1.0
|
HZ1
|
B:LYS529
|
4.1
|
197.9
|
1.0
|
CA
|
B:THR530
|
4.1
|
183.6
|
1.0
|
HH21
|
B:ARG710
|
4.3
|
220.7
|
1.0
|
HZ3
|
B:LYS529
|
4.3
|
197.9
|
1.0
|
HG23
|
B:THR530
|
4.4
|
183.6
|
1.0
|
O2B
|
B:AGS1001
|
4.5
|
207.6
|
1.0
|
HB2
|
B:LYS529
|
4.6
|
197.9
|
1.0
|
HG22
|
B:THR530
|
4.6
|
183.6
|
1.0
|
NZ
|
B:LYS529
|
4.6
|
197.9
|
1.0
|
HA
|
B:THR530
|
4.7
|
183.6
|
1.0
|
OD1
|
B:ASP590
|
4.7
|
188.2
|
1.0
|
HG1
|
B:THR638
|
4.7
|
213.6
|
1.0
|
OE2
|
B:GLU591
|
4.7
|
217.8
|
1.0
|
HE2
|
B:LYS529
|
4.8
|
197.9
|
1.0
|
HH22
|
B:ARG710
|
4.8
|
220.7
|
1.0
|
NH2
|
B:ARG710
|
4.9
|
220.7
|
1.0
|
OD2
|
B:ASP590
|
4.9
|
188.2
|
1.0
|
HG3
|
C:GLN615
|
5.0
|
189.9
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 7ngc
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Magnesium Binding Sites List in 7ngc
Magnesium binding site 3 out
of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1002
b:159.6
occ:1.00
|
OG1
|
C:THR530
|
2.1
|
184.8
|
1.0
|
O2G
|
C:AGS1001
|
2.1
|
194.2
|
1.0
|
O1B
|
C:AGS1001
|
2.1
|
194.2
|
1.0
|
PG
|
C:AGS1001
|
3.0
|
194.2
|
1.0
|
HB
|
C:THR530
|
3.1
|
184.8
|
1.0
|
CB
|
C:THR530
|
3.1
|
184.8
|
1.0
|
S1G
|
C:AGS1001
|
3.2
|
194.2
|
1.0
|
PB
|
C:AGS1001
|
3.3
|
194.2
|
1.0
|
O1A
|
C:AGS1001
|
3.3
|
194.2
|
1.0
|
H
|
C:THR530
|
3.4
|
184.8
|
1.0
|
O3B
|
C:AGS1001
|
3.5
|
194.2
|
1.0
|
HG21
|
C:THR530
|
3.8
|
184.8
|
1.0
|
CG2
|
C:THR530
|
4.0
|
184.8
|
1.0
|
N
|
C:THR530
|
4.1
|
184.8
|
1.0
|
PA
|
C:AGS1001
|
4.2
|
194.2
|
1.0
|
HZ3
|
C:LYS529
|
4.2
|
191.3
|
1.0
|
CA
|
C:THR530
|
4.2
|
184.8
|
1.0
|
O3A
|
C:AGS1001
|
4.3
|
194.2
|
1.0
|
O2A
|
C:AGS1001
|
4.4
|
194.2
|
1.0
|
O2B
|
C:AGS1001
|
4.4
|
194.2
|
1.0
|
O3G
|
C:AGS1001
|
4.4
|
194.2
|
1.0
|
HB2
|
C:LYS529
|
4.4
|
191.3
|
1.0
|
HG23
|
C:THR530
|
4.5
|
184.8
|
1.0
|
HE2
|
C:LYS529
|
4.6
|
191.3
|
1.0
|
HZ1
|
C:LYS529
|
4.7
|
191.3
|
1.0
|
OD1
|
C:ASP590
|
4.7
|
192.3
|
1.0
|
HA
|
C:THR530
|
4.7
|
184.8
|
1.0
|
NZ
|
C:LYS529
|
4.8
|
191.3
|
1.0
|
HG22
|
C:THR530
|
4.8
|
184.8
|
1.0
|
HH21
|
C:ARG710
|
5.0
|
182.9
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 7ngc
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Magnesium Binding Sites List in 7ngc
Magnesium binding site 4 out
of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1002
b:106.2
occ:1.00
|
OG1
|
E:THR530
|
2.1
|
151.2
|
1.0
|
O1B
|
E:AGS1001
|
2.1
|
145.9
|
1.0
|
O2G
|
E:AGS1001
|
2.1
|
145.9
|
1.0
|
PG
|
E:AGS1001
|
3.0
|
145.9
|
1.0
|
CB
|
E:THR530
|
3.2
|
151.2
|
1.0
|
HB
|
E:THR530
|
3.3
|
151.2
|
1.0
|
PB
|
E:AGS1001
|
3.3
|
145.9
|
1.0
|
O1A
|
E:AGS1001
|
3.3
|
145.9
|
1.0
|
S1G
|
E:AGS1001
|
3.3
|
145.9
|
1.0
|
H
|
E:THR530
|
3.4
|
151.2
|
1.0
|
O3B
|
E:AGS1001
|
3.5
|
145.9
|
1.0
|
HG21
|
E:THR530
|
3.9
|
151.2
|
1.0
|
O2A
|
E:AGS1001
|
3.9
|
145.9
|
1.0
|
PA
|
E:AGS1001
|
3.9
|
145.9
|
1.0
|
O3A
|
E:AGS1001
|
4.1
|
145.9
|
1.0
|
CG2
|
E:THR530
|
4.1
|
151.2
|
1.0
|
N
|
E:THR530
|
4.2
|
151.2
|
1.0
|
HB2
|
E:LYS529
|
4.2
|
163.2
|
1.0
|
OD1
|
E:ASP590
|
4.3
|
202.0
|
1.0
|
CA
|
E:THR530
|
4.3
|
151.2
|
1.0
|
OD2
|
E:ASP590
|
4.4
|
202.0
|
1.0
|
O3G
|
E:AGS1001
|
4.4
|
145.9
|
1.0
|
O2B
|
E:AGS1001
|
4.5
|
145.9
|
1.0
|
HG23
|
E:THR530
|
4.5
|
151.2
|
1.0
|
HA
|
E:THR530
|
4.8
|
151.2
|
1.0
|
CG
|
E:ASP590
|
4.8
|
202.0
|
1.0
|
HD2
|
E:LYS529
|
4.9
|
163.2
|
1.0
|
HG22
|
E:THR530
|
4.9
|
151.2
|
1.0
|
HH12
|
E:ARG546
|
4.9
|
187.7
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 7ngc
Go back to
Magnesium Binding Sites List in 7ngc
Magnesium binding site 5 out
of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1002
b:261.8
occ:1.00
|
OG1
|
F:THR530
|
2.1
|
250.8
|
1.0
|
O1B
|
F:AGS1001
|
2.1
|
243.7
|
1.0
|
O2G
|
F:AGS1001
|
2.1
|
243.7
|
1.0
|
HB
|
F:THR530
|
2.7
|
250.8
|
1.0
|
CB
|
F:THR530
|
2.9
|
250.8
|
1.0
|
PG
|
F:AGS1001
|
2.9
|
243.7
|
1.0
|
S1G
|
F:AGS1001
|
2.9
|
243.7
|
1.0
|
HH12
|
A:ARG652
|
3.2
|
215.6
|
1.0
|
PB
|
F:AGS1001
|
3.3
|
243.7
|
1.0
|
HG21
|
F:THR530
|
3.4
|
250.8
|
1.0
|
O1A
|
F:AGS1001
|
3.5
|
243.7
|
1.0
|
O3B
|
F:AGS1001
|
3.5
|
243.7
|
1.0
|
H
|
F:THR530
|
3.6
|
250.8
|
1.0
|
CG2
|
F:THR530
|
3.7
|
250.8
|
1.0
|
HH12
|
F:ARG710
|
3.8
|
229.4
|
1.0
|
NH1
|
A:ARG652
|
4.0
|
215.6
|
1.0
|
CA
|
F:THR530
|
4.1
|
250.8
|
1.0
|
N
|
F:THR530
|
4.2
|
250.8
|
1.0
|
HH22
|
A:ARG652
|
4.2
|
215.6
|
1.0
|
PA
|
F:AGS1001
|
4.2
|
243.7
|
1.0
|
HZ3
|
F:LYS529
|
4.2
|
246.8
|
1.0
|
O3G
|
F:AGS1001
|
4.3
|
243.7
|
1.0
|
HG22
|
F:THR530
|
4.3
|
250.8
|
1.0
|
O3A
|
F:AGS1001
|
4.3
|
243.7
|
1.0
|
O2B
|
F:AGS1001
|
4.3
|
243.7
|
1.0
|
HH11
|
A:ARG652
|
4.4
|
215.6
|
1.0
|
O2A
|
F:AGS1001
|
4.4
|
243.7
|
1.0
|
HG23
|
F:THR530
|
4.4
|
250.8
|
1.0
|
HA
|
F:THR530
|
4.5
|
250.8
|
1.0
|
NH1
|
F:ARG710
|
4.6
|
229.4
|
1.0
|
OD1
|
F:ASP590
|
4.6
|
234.8
|
1.0
|
HZ1
|
F:LYS529
|
4.6
|
246.8
|
1.0
|
HH11
|
F:ARG710
|
4.6
|
229.4
|
1.0
|
HG1
|
F:THR638
|
4.8
|
243.1
|
1.0
|
OD2
|
F:ASP590
|
4.8
|
234.8
|
1.0
|
HB2
|
F:LYS529
|
4.8
|
246.8
|
1.0
|
NH2
|
A:ARG652
|
4.8
|
215.6
|
1.0
|
NZ
|
F:LYS529
|
4.9
|
246.8
|
1.0
|
CZ
|
A:ARG652
|
4.9
|
215.6
|
1.0
|
H
|
F:GLY526
|
5.0
|
233.9
|
1.0
|
|
Reference:
I.Mohammed,
K.A.Schmitz,
N.Schenck,
T.Maier,
J.P.Abrahams.
P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs To Be Published.
Page generated: Thu Oct 3 01:40:35 2024
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