Magnesium in PDB 7ngc: P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs

Enzymatic activity of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs

All present enzymatic activity of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs (pdb code 7ngc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs, PDB code: 7ngc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7ngc

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Magnesium binding site 1 out of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:199.6
occ:1.00
 OG1 A:THR530 2.1 220.2 1.0
O1B A:AGS1001 2.1 224.5 1.0
O2G A:AGS1001 2.1 224.5 1.0
S1G A:AGS1001 2.9 224.5 1.0
PG A:AGS1001 2.9 224.5 1.0
HB A:THR530 2.9 220.2 1.0
CB A:THR530 3.0 220.2 1.0
PB A:AGS1001 3.2 224.5 1.0
O1A A:AGS1001 3.3 224.5 1.0
H A:THR530 3.5 220.2 1.0
O3B A:AGS1001 3.5 224.5 1.0
HG21 A:THR530 3.6 220.2 1.0
OE2 A:GLU591 3.8 220.3 1.0
CG2 A:THR530 3.9 220.2 1.0
PA A:AGS1001 4.0 224.5 1.0
O3A A:AGS1001 4.0 224.5 1.0
HH22 B:ARG652 4.1 220.7 1.0
N A:THR530 4.1 220.2 1.0
HZ3 A:LYS529 4.2 211.6 1.0
CA A:THR530 4.2 220.2 1.0
O2A A:AGS1001 4.2 224.5 1.0
O3G A:AGS1001 4.2 224.5 1.0
HH22 A:ARG710 4.3 210.1 1.0
HZ1 A:LYS529 4.4 211.6 1.0
O2B A:AGS1001 4.5 224.5 1.0
HB2 A:LYS529 4.5 211.6 1.0
HG23 A:THR530 4.5 220.2 1.0
HG1 A:THR638 4.5 197.6 1.0
HG22 A:THR530 4.6 220.2 1.0
HA A:THR530 4.6 220.2 1.0
NZ A:LYS529 4.7 211.6 1.0
NH2 A:ARG710 4.8 210.1 1.0
HH21 A:ARG710 4.8 210.1 1.0
HE2 A:LYS529 4.8 211.6 1.0
NH2 B:ARG652 4.9 220.7 1.0
CD A:GLU591 4.9 220.3 1.0
OD1 A:ASP590 4.9 210.2 1.0
OD2 A:ASP590 5.0 210.2 1.0

Magnesium binding site 2 out of 5 in 7ngc

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Magnesium binding site 2 out of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:217.7
occ:1.00
 OG1 B:THR530 2.1 183.6 1.0
O2G B:AGS1001 2.1 207.6 1.0
O1B B:AGS1001 2.1 207.6 1.0
S1G B:AGS1001 2.7 207.6 1.0
PG B:AGS1001 2.7 207.6 1.0
HB B:THR530 2.8 183.6 1.0
CB B:THR530 3.0 183.6 1.0
O1A B:AGS1001 3.1 207.6 1.0
PB B:AGS1001 3.3 207.6 1.0
H B:THR530 3.4 183.6 1.0
O3B B:AGS1001 3.4 207.6 1.0
HG21 B:THR530 3.6 183.6 1.0
PA B:AGS1001 3.9 207.6 1.0
CG2 B:THR530 3.9 183.6 1.0
O2A B:AGS1001 3.9 207.6 1.0
N B:THR530 4.1 183.6 1.0
O3A B:AGS1001 4.1 207.6 1.0
O3G B:AGS1001 4.1 207.6 1.0
HZ1 B:LYS529 4.1 197.9 1.0
CA B:THR530 4.1 183.6 1.0
HH21 B:ARG710 4.3 220.7 1.0
HZ3 B:LYS529 4.3 197.9 1.0
HG23 B:THR530 4.4 183.6 1.0
O2B B:AGS1001 4.5 207.6 1.0
HB2 B:LYS529 4.6 197.9 1.0
HG22 B:THR530 4.6 183.6 1.0
NZ B:LYS529 4.6 197.9 1.0
HA B:THR530 4.7 183.6 1.0
OD1 B:ASP590 4.7 188.2 1.0
HG1 B:THR638 4.7 213.6 1.0
OE2 B:GLU591 4.7 217.8 1.0
HE2 B:LYS529 4.8 197.9 1.0
HH22 B:ARG710 4.8 220.7 1.0
NH2 B:ARG710 4.9 220.7 1.0
OD2 B:ASP590 4.9 188.2 1.0
HG3 C:GLN615 5.0 189.9 1.0

Magnesium binding site 3 out of 5 in 7ngc

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Magnesium binding site 3 out of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:159.6
occ:1.00
 OG1 C:THR530 2.1 184.8 1.0
O2G C:AGS1001 2.1 194.2 1.0
O1B C:AGS1001 2.1 194.2 1.0
PG C:AGS1001 3.0 194.2 1.0
HB C:THR530 3.1 184.8 1.0
CB C:THR530 3.1 184.8 1.0
S1G C:AGS1001 3.2 194.2 1.0
PB C:AGS1001 3.3 194.2 1.0
O1A C:AGS1001 3.3 194.2 1.0
H C:THR530 3.4 184.8 1.0
O3B C:AGS1001 3.5 194.2 1.0
HG21 C:THR530 3.8 184.8 1.0
CG2 C:THR530 4.0 184.8 1.0
N C:THR530 4.1 184.8 1.0
PA C:AGS1001 4.2 194.2 1.0
HZ3 C:LYS529 4.2 191.3 1.0
CA C:THR530 4.2 184.8 1.0
O3A C:AGS1001 4.3 194.2 1.0
O2A C:AGS1001 4.4 194.2 1.0
O2B C:AGS1001 4.4 194.2 1.0
O3G C:AGS1001 4.4 194.2 1.0
HB2 C:LYS529 4.4 191.3 1.0
HG23 C:THR530 4.5 184.8 1.0
HE2 C:LYS529 4.6 191.3 1.0
HZ1 C:LYS529 4.7 191.3 1.0
OD1 C:ASP590 4.7 192.3 1.0
HA C:THR530 4.7 184.8 1.0
NZ C:LYS529 4.8 191.3 1.0
HG22 C:THR530 4.8 184.8 1.0
HH21 C:ARG710 5.0 182.9 1.0

Magnesium binding site 4 out of 5 in 7ngc

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Magnesium binding site 4 out of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1002

b:106.2
occ:1.00
 OG1 E:THR530 2.1 151.2 1.0
O1B E:AGS1001 2.1 145.9 1.0
O2G E:AGS1001 2.1 145.9 1.0
PG E:AGS1001 3.0 145.9 1.0
CB E:THR530 3.2 151.2 1.0
HB E:THR530 3.3 151.2 1.0
PB E:AGS1001 3.3 145.9 1.0
O1A E:AGS1001 3.3 145.9 1.0
S1G E:AGS1001 3.3 145.9 1.0
H E:THR530 3.4 151.2 1.0
O3B E:AGS1001 3.5 145.9 1.0
HG21 E:THR530 3.9 151.2 1.0
O2A E:AGS1001 3.9 145.9 1.0
PA E:AGS1001 3.9 145.9 1.0
O3A E:AGS1001 4.1 145.9 1.0
CG2 E:THR530 4.1 151.2 1.0
N E:THR530 4.2 151.2 1.0
HB2 E:LYS529 4.2 163.2 1.0
OD1 E:ASP590 4.3 202.0 1.0
CA E:THR530 4.3 151.2 1.0
OD2 E:ASP590 4.4 202.0 1.0
O3G E:AGS1001 4.4 145.9 1.0
O2B E:AGS1001 4.5 145.9 1.0
HG23 E:THR530 4.5 151.2 1.0
HA E:THR530 4.8 151.2 1.0
CG E:ASP590 4.8 202.0 1.0
HD2 E:LYS529 4.9 163.2 1.0
HG22 E:THR530 4.9 151.2 1.0
HH12 E:ARG546 4.9 187.7 1.0

Magnesium binding site 5 out of 5 in 7ngc

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Magnesium binding site 5 out of 5 in the P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:261.8
occ:1.00
 OG1 F:THR530 2.1 250.8 1.0
O1B F:AGS1001 2.1 243.7 1.0
O2G F:AGS1001 2.1 243.7 1.0
HB F:THR530 2.7 250.8 1.0
CB F:THR530 2.9 250.8 1.0
PG F:AGS1001 2.9 243.7 1.0
S1G F:AGS1001 2.9 243.7 1.0
HH12 A:ARG652 3.2 215.6 1.0
PB F:AGS1001 3.3 243.7 1.0
HG21 F:THR530 3.4 250.8 1.0
O1A F:AGS1001 3.5 243.7 1.0
O3B F:AGS1001 3.5 243.7 1.0
H F:THR530 3.6 250.8 1.0
CG2 F:THR530 3.7 250.8 1.0
HH12 F:ARG710 3.8 229.4 1.0
NH1 A:ARG652 4.0 215.6 1.0
CA F:THR530 4.1 250.8 1.0
N F:THR530 4.2 250.8 1.0
HH22 A:ARG652 4.2 215.6 1.0
PA F:AGS1001 4.2 243.7 1.0
HZ3 F:LYS529 4.2 246.8 1.0
O3G F:AGS1001 4.3 243.7 1.0
HG22 F:THR530 4.3 250.8 1.0
O3A F:AGS1001 4.3 243.7 1.0
O2B F:AGS1001 4.3 243.7 1.0
HH11 A:ARG652 4.4 215.6 1.0
O2A F:AGS1001 4.4 243.7 1.0
HG23 F:THR530 4.4 250.8 1.0
HA F:THR530 4.5 250.8 1.0
NH1 F:ARG710 4.6 229.4 1.0
OD1 F:ASP590 4.6 234.8 1.0
HZ1 F:LYS529 4.6 246.8 1.0
HH11 F:ARG710 4.6 229.4 1.0
HG1 F:THR638 4.8 243.1 1.0
OD2 F:ASP590 4.8 234.8 1.0
HB2 F:LYS529 4.8 246.8 1.0
NH2 A:ARG652 4.8 215.6 1.0
NZ F:LYS529 4.9 246.8 1.0
CZ A:ARG652 4.9 215.6 1.0
H F:GLY526 5.0 233.9 1.0

Reference:

I.Mohammed, K.A.Schmitz, N.Schenck, T.Maier, J.P.Abrahams. P2A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and in Presence of Atpgs To Be Published.
Page generated: Sat Apr 17 16:44:09 2021

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