Magnesium in PDB 7nho: Structure of Psii-M

All present enzymatic activity of Structure of Psii-M:
1.10.3.9;

The structure of Structure of Psii-M also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Manganese	(Mn)	1 atom
Chlorine	(Cl)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 35;

Binding sites:

The binding sites of Magnesium atom in the Structure of Psii-M (pdb code 7nho). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 35 binding sites of Magnesium where determined in the Structure of Psii-M, PDB code: 7nho:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:104.9 occ:1.00 MG A:CLA405 0.0 104.9 1.0 NB A:CLA405 2.0 104.9 1.0 ND A:CLA405 2.0 104.9 1.0 NA A:CLA405 2.1 104.9 1.0 NC A:CLA405 2.1 104.9 1.0 C1B A:CLA405 2.9 104.9 1.0 NE2 A:HIS198 2.9 102.8 1.0 C4D A:CLA405 3.0 104.9 1.0 C4B A:CLA405 3.1 104.9 1.0 C1D A:CLA405 3.1 104.9 1.0 C4A A:CLA405 3.1 104.9 1.0 C1C A:CLA405 3.1 104.9 1.0 C4C A:CLA405 3.2 104.9 1.0 C1A A:CLA405 3.2 104.9 1.0 CHB A:CLA405 3.4 104.9 1.0 CHD A:CLA405 3.4 104.9 1.0 CHC A:CLA405 3.5 104.9 1.0 CE1 A:HIS198 3.5 102.8 1.0 CHA A:CLA405 3.5 104.9 1.0 CBB D:CLA406 4.0 103.7 1.0 CD2 A:HIS198 4.2 102.8 1.0 C2B A:CLA405 4.2 104.9 1.0 C3B A:CLA405 4.3 104.9 1.0 C3D A:CLA405 4.3 104.9 1.0 C2D A:CLA405 4.3 104.9 1.0 C2C A:CLA405 4.4 104.9 1.0 C3C A:CLA405 4.5 104.9 1.0 CAB D:CLA406 4.5 103.7 1.0 C3A A:CLA405 4.5 104.9 1.0 C2A A:CLA405 4.5 104.9 1.0 ND1 A:HIS198 4.8 102.8 1.0 CBD A:CLA405 5.0 104.9 1.0

Magnesium binding site 2 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:108.0 occ:1.00 MG A:CLA406 0.0 108.0 1.0 ND A:CLA406 2.0 108.0 1.0 NB A:CLA406 2.0 108.0 1.0 NA A:CLA406 2.1 108.0 1.0 NC A:CLA406 2.1 108.0 1.0 C4D A:CLA406 2.9 108.0 1.0 C4B A:CLA406 3.0 108.0 1.0 C1B A:CLA406 3.0 108.0 1.0 C1C A:CLA406 3.1 108.0 1.0 C4A A:CLA406 3.1 108.0 1.0 C1D A:CLA406 3.1 108.0 1.0 C1A A:CLA406 3.2 108.0 1.0 C4C A:CLA406 3.2 108.0 1.0 CHC A:CLA406 3.4 108.0 1.0 CHB A:CLA406 3.4 108.0 1.0 CHA A:CLA406 3.5 108.0 1.0 CHD A:CLA406 3.5 108.0 1.0 CBB A:PHO404 3.9 106.5 1.0 C3B A:CLA406 4.3 108.0 1.0 C2B A:CLA406 4.3 108.0 1.0 C3D A:CLA406 4.3 108.0 1.0 C2D A:CLA406 4.3 108.0 1.0 C2C A:CLA406 4.4 108.0 1.0 C3C A:CLA406 4.4 108.0 1.0 C3A A:CLA406 4.4 108.0 1.0 C2A A:CLA406 4.5 108.0 1.0 O1A A:CLA406 4.6 108.0 1.0 CG2 A:THR179 4.9 105.7 1.0 CBD A:CLA406 5.0 108.0 1.0

Magnesium binding site 3 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg407 b:106.7 occ:1.00 MG A:CLA407 0.0 106.7 1.0 NB A:CLA407 2.0 106.7 1.0 ND A:CLA407 2.0 106.7 1.0 NA A:CLA407 2.1 106.7 1.0 NC A:CLA407 2.1 106.7 1.0 C4D A:CLA407 3.0 106.7 1.0 C1B A:CLA407 3.0 106.7 1.0 C4A A:CLA407 3.0 106.7 1.0 C4B A:CLA407 3.1 106.7 1.0 C1C A:CLA407 3.1 106.7 1.0 C4C A:CLA407 3.1 106.7 1.0 C1D A:CLA407 3.1 106.7 1.0 C1A A:CLA407 3.1 106.7 1.0 CHB A:CLA407 3.4 106.7 1.0 CHD A:CLA407 3.4 106.7 1.0 CHC A:CLA407 3.4 106.7 1.0 CHA A:CLA407 3.5 106.7 1.0 C2B A:CLA407 4.3 106.7 1.0 C3D A:CLA407 4.3 106.7 1.0 C3B A:CLA407 4.3 106.7 1.0 C2D A:CLA407 4.3 106.7 1.0 C3C A:CLA407 4.3 106.7 1.0 C2C A:CLA407 4.4 106.7 1.0 CBB D:PHO405 4.4 106.1 1.0 C3A A:CLA407 4.4 106.7 1.0 C19 D:PHO405 4.4 106.1 1.0 C2A A:CLA407 4.4 106.7 1.0 CBD A:CLA407 4.9 106.7 1.0

Magnesium binding site 4 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg408 b:114.8 occ:1.00 MG A:CLA408 0.0 114.8 1.0 ND A:CLA408 2.0 114.8 1.0 NB A:CLA408 2.0 114.8 1.0 NA A:CLA408 2.1 114.8 1.0 NC A:CLA408 2.1 114.8 1.0 C4D A:CLA408 2.9 114.8 1.0 C1B A:CLA408 3.0 114.8 1.0 C4B A:CLA408 3.0 114.8 1.0 NE2 A:HIS118 3.0 105.7 1.0 C4A A:CLA408 3.1 114.8 1.0 C1D A:CLA408 3.1 114.8 1.0 C1C A:CLA408 3.1 114.8 1.0 C4C A:CLA408 3.2 114.8 1.0 C1A A:CLA408 3.2 114.8 1.0 CHB A:CLA408 3.4 114.8 1.0 CHC A:CLA408 3.4 114.8 1.0 CHA A:CLA408 3.4 114.8 1.0 CHD A:CLA408 3.5 114.8 1.0 CE1 A:HIS118 3.7 105.7 1.0 CD2 A:HIS118 4.0 105.7 1.0 C3D A:CLA408 4.2 114.8 1.0 CG2 I:VAL12 4.2 117.8 1.0 C2B A:CLA408 4.3 114.8 1.0 C3B A:CLA408 4.3 114.8 1.0 CG1 I:VAL8 4.3 120.1 1.0 C2D A:CLA408 4.3 114.8 1.0 C2C A:CLA408 4.4 114.8 1.0 C3C A:CLA408 4.4 114.8 1.0 C3A A:CLA408 4.5 114.8 1.0 C2A A:CLA408 4.5 114.8 1.0 ND1 A:HIS118 4.8 105.7 1.0 CBD A:CLA408 4.9 114.8 1.0 CG A:HIS118 5.0 105.7 1.0

Magnesium binding site 5 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:117.3 occ:1.00 MG B:CLA602 0.0 117.3 1.0 NB B:CLA602 2.0 117.3 1.0 ND B:CLA602 2.1 117.3 1.0 NC B:CLA602 2.1 117.3 1.0 NA B:CLA602 2.1 117.3 1.0 C1B B:CLA602 2.9 117.3 1.0 C4D B:CLA602 3.0 117.3 1.0 C1D B:CLA602 3.0 117.3 1.0 C4A B:CLA602 3.0 117.3 1.0 C4B B:CLA602 3.1 117.3 1.0 C4C B:CLA602 3.1 117.3 1.0 C1C B:CLA602 3.1 117.3 1.0 C1A B:CLA602 3.2 117.3 1.0 CHB B:CLA602 3.3 117.3 1.0 CHD B:CLA602 3.4 117.3 1.0 CHA B:CLA602 3.5 117.3 1.0 CHC B:CLA602 3.5 117.3 1.0 C2B B:CLA602 4.2 117.3 1.0 C2D B:CLA602 4.2 117.3 1.0 C3D B:CLA602 4.2 117.3 1.0 C3B B:CLA602 4.3 117.3 1.0 C3C B:CLA602 4.4 117.3 1.0 C2C B:CLA602 4.4 117.3 1.0 C3A B:CLA602 4.4 117.3 1.0 O B:TRP185 4.4 112.5 1.0 C2A B:CLA602 4.5 117.3 1.0 CBB B:CLA603 4.7 106.9 1.0 CBD B:CLA602 4.9 117.3 1.0

Magnesium binding site 6 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:106.9 occ:1.00 MG B:CLA603 0.0 106.9 1.0 NB B:CLA603 2.0 106.9 1.0 ND B:CLA603 2.0 106.9 1.0 NA B:CLA603 2.1 106.9 1.0 NC B:CLA603 2.1 106.9 1.0 ND1 B:HIS201 2.8 103.9 1.0 C4D B:CLA603 3.0 106.9 1.0 C1B B:CLA603 3.0 106.9 1.0 C4A B:CLA603 3.1 106.9 1.0 C4B B:CLA603 3.1 106.9 1.0 C1C B:CLA603 3.1 106.9 1.0 C4C B:CLA603 3.1 106.9 1.0 C1D B:CLA603 3.1 106.9 1.0 C1A B:CLA603 3.2 106.9 1.0 CHB B:CLA603 3.4 106.9 1.0 CHC B:CLA603 3.5 106.9 1.0 CE1 B:HIS201 3.5 103.9 1.0 CHD B:CLA603 3.5 106.9 1.0 CHA B:CLA603 3.5 106.9 1.0 CG B:HIS201 3.9 103.9 1.0 CZ H:PHE41 4.1 111.1 1.0 C2B B:CLA603 4.3 106.9 1.0 CE2 B:PHE190 4.3 111.3 1.0 C3B B:CLA603 4.3 106.9 1.0 C3D B:CLA603 4.3 106.9 1.0 CB B:HIS201 4.4 103.9 1.0 C2D B:CLA603 4.4 106.9 1.0 C2C B:CLA603 4.4 106.9 1.0 C3C B:CLA603 4.4 106.9 1.0 C3A B:CLA603 4.4 106.9 1.0 C2A B:CLA603 4.4 106.9 1.0 CE2 H:PHE41 4.6 111.1 1.0 NE2 B:HIS201 4.7 103.9 1.0 CD2 B:HIS201 4.9 103.9 1.0 CBD B:CLA603 5.0 106.9 1.0 CD2 B:PHE190 5.0 111.3 1.0

Magnesium binding site 7 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg604 b:105.3 occ:1.00 MG B:CLA604 0.0 105.3 1.0 ND B:CLA604 2.0 105.3 1.0 NB B:CLA604 2.0 105.3 1.0 NC B:CLA604 2.1 105.3 1.0 NA B:CLA604 2.1 105.3 1.0 NE2 B:HIS202 2.7 102.2 1.0 C4D B:CLA604 3.0 105.3 1.0 C1B B:CLA604 3.0 105.3 1.0 C4A B:CLA604 3.0 105.3 1.0 C4B B:CLA604 3.1 105.3 1.0 C1C B:CLA604 3.1 105.3 1.0 C4C B:CLA604 3.1 105.3 1.0 C1D B:CLA604 3.1 105.3 1.0 C1A B:CLA604 3.2 105.3 1.0 CHB B:CLA604 3.4 105.3 1.0 CHC B:CLA604 3.4 105.3 1.0 CHD B:CLA604 3.5 105.3 1.0 CHA B:CLA604 3.5 105.3 1.0 CE1 B:HIS202 3.6 102.2 1.0 CD2 B:HIS202 3.6 102.2 1.0 C9 B:CLA606 4.0 105.4 1.0 C3D B:CLA604 4.3 105.3 1.0 C3B B:CLA604 4.3 105.3 1.0 C2B B:CLA604 4.3 105.3 1.0 C3C B:CLA604 4.3 105.3 1.0 C2C B:CLA604 4.3 105.3 1.0 C6 B:CLA606 4.4 105.4 1.0 C2D B:CLA604 4.4 105.3 1.0 C3A B:CLA604 4.4 105.3 1.0 C2A B:CLA604 4.5 105.3 1.0 C8 B:CLA606 4.6 105.4 1.0 ND1 B:HIS202 4.7 102.2 1.0 CG B:HIS202 4.8 102.2 1.0 C2 B:CLA604 4.9 105.3 1.0 O2A B:CLA604 4.9 105.3 1.0 C7 B:CLA606 5.0 105.4 1.0

Magnesium binding site 8 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg605 b:104.3 occ:1.00 MG B:CLA605 0.0 104.3 1.0 ND B:CLA605 2.0 104.3 1.0 NB B:CLA605 2.0 104.3 1.0 NC B:CLA605 2.1 104.3 1.0 NA B:CLA605 2.1 104.3 1.0 C4D B:CLA605 3.0 104.3 1.0 C1B B:CLA605 3.0 104.3 1.0 C4B B:CLA605 3.1 104.3 1.0 NE2 B:HIS455 3.1 95.3 1.0 C4A B:CLA605 3.1 104.3 1.0 C1C B:CLA605 3.1 104.3 1.0 C1D B:CLA605 3.1 104.3 1.0 C4C B:CLA605 3.2 104.3 1.0 C1A B:CLA605 3.2 104.3 1.0 CHB B:CLA605 3.4 104.3 1.0 CHC B:CLA605 3.5 104.3 1.0 CHD B:CLA605 3.5 104.3 1.0 CHA B:CLA605 3.5 104.3 1.0 CD2 B:HIS455 3.9 95.3 1.0 CE1 B:HIS455 4.0 95.3 1.0 CBB B:CLA614 4.1 106.1 1.0 C14 B:CLA613 4.1 103.7 1.0 C2B B:CLA605 4.3 104.3 1.0 C3B B:CLA605 4.3 104.3 1.0 C3D B:CLA605 4.3 104.3 1.0 C2D B:CLA605 4.3 104.3 1.0 C2C B:CLA605 4.4 104.3 1.0 C3C B:CLA605 4.4 104.3 1.0 C3A B:CLA605 4.5 104.3 1.0 C2A B:CLA605 4.5 104.3 1.0 C15 B:CLA613 4.8 103.7 1.0 C13 B:CLA613 4.9 103.7 1.0

Magnesium binding site 9 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg606 b:105.4 occ:1.00 MG B:CLA606 0.0 105.4 1.0 ND B:CLA606 2.0 105.4 1.0 NB B:CLA606 2.0 105.4 1.0 NA B:CLA606 2.1 105.4 1.0 NC B:CLA606 2.1 105.4 1.0 NE2 B:HIS100 2.9 107.5 1.0 C4D B:CLA606 3.0 105.4 1.0 C1B B:CLA606 3.0 105.4 1.0 C4B B:CLA606 3.1 105.4 1.0 C4A B:CLA606 3.1 105.4 1.0 C1C B:CLA606 3.1 105.4 1.0 C1D B:CLA606 3.1 105.4 1.0 C1A B:CLA606 3.2 105.4 1.0 C4C B:CLA606 3.2 105.4 1.0 CE1 B:HIS100 3.3 107.5 1.0 CHC B:CLA606 3.4 105.4 1.0 CHB B:CLA606 3.5 105.4 1.0 CHA B:CLA606 3.5 105.4 1.0 CHD B:CLA606 3.5 105.4 1.0 C2 B:CLA605 3.8 104.3 1.0 CD2 B:HIS100 4.1 107.5 1.0 C1 B:CLA605 4.1 104.3 1.0 C3D B:CLA606 4.3 105.4 1.0 C2B B:CLA606 4.3 105.4 1.0 C3B B:CLA606 4.3 105.4 1.0 C2D B:CLA606 4.4 105.4 1.0 C2C B:CLA606 4.4 105.4 1.0 C3C B:CLA606 4.4 105.4 1.0 C2A B:CLA606 4.4 105.4 1.0 C3A B:CLA606 4.4 105.4 1.0 ND1 B:HIS100 4.5 107.5 1.0 C3 B:CLA605 4.7 104.3 1.0 CAA B:CLA606 4.9 105.4 1.0 CBD B:CLA606 5.0 105.4 1.0 CG B:HIS100 5.0 107.5 1.0

Magnesium binding site 10 out of 35 in the Structure of Psii-M


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Psii-M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg607 b:109.1 occ:1.00 MG B:CLA607 0.0 109.1 1.0 ND B:CLA607 2.0 109.1 1.0 NB B:CLA607 2.0 109.1 1.0 NA B:CLA607 2.1 109.1 1.0 NC B:CLA607 2.1 109.1 1.0 ND1 B:HIS157 2.9 106.9 1.0 C4D B:CLA607 3.0 109.1 1.0 C1B B:CLA607 3.0 109.1 1.0 C4B B:CLA607 3.1 109.1 1.0 C4A B:CLA607 3.1 109.1 1.0 CE1 B:HIS157 3.1 106.9 1.0 C1C B:CLA607 3.1 109.1 1.0 C1D B:CLA607 3.1 109.1 1.0 C4C B:CLA607 3.2 109.1 1.0 C1A B:CLA607 3.2 109.1 1.0 CHB B:CLA607 3.4 109.1 1.0 CHC B:CLA607 3.4 109.1 1.0 CHA B:CLA607 3.5 109.1 1.0 CHD B:CLA607 3.5 109.1 1.0 CG B:HIS157 4.2 106.9 1.0 C3D B:CLA607 4.3 109.1 1.0 C3B B:CLA607 4.3 109.1 1.0 C2B B:CLA607 4.3 109.1 1.0 C2D B:CLA607 4.4 109.1 1.0 C2C B:CLA607 4.4 109.1 1.0 NE2 B:HIS157 4.4 106.9 1.0 C3C B:CLA607 4.4 109.1 1.0 C3A B:CLA607 4.4 109.1 1.0 C2A B:CLA607 4.5 109.1 1.0 O1A B:CLA607 4.7 109.1 1.0 CB B:HIS157 4.9 106.9 1.0 CD2 B:HIS157 4.9 106.9 1.0 CBD B:CLA607 5.0 109.1 1.0

J.Zabret, S.Bohn, S.K.Schuller, O.Arnolds, M.Moller, J.Meier-Credo, P.Liauw, A.Chan, E.Tajkhorshid, J.D.Langer, R.Stoll, A.Krieger-Liszkay, B.D.Engel, T.Rudack, J.M.Schuller, M.M.Nowaczyk. Structural Insights Into Photosystem II Assembly. Nat.Plants V. 7 524 2021.
ISSN: ESSN 2055-0278
PubMed: 33846594
DOI: 10.1038/S41477-021-00895-0