Magnesium in PDB 7nhp: Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)

Enzymatic activity of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)

All present enzymatic activity of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34):
1.10.3.9;

Other elements in 7nhp:

The structure of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Iron (Fe) 2 atoms
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 35;

Binding sites:

The binding sites of Magnesium atom in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) (pdb code 7nhp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 35 binding sites of Magnesium where determined in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34), PDB code: 7nhp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 35 in 7nhp

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Magnesium binding site 1 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:93.2
occ:1.00
MG A:CLA404 0.0 93.2 1.0
NB A:CLA404 2.0 93.2 1.0
ND A:CLA404 2.0 93.2 1.0
NA A:CLA404 2.1 93.2 1.0
NC A:CLA404 2.1 93.2 1.0
NE2 A:HIS198 2.9 91.3 1.0
C1B A:CLA404 3.0 93.2 1.0
C4D A:CLA404 3.0 93.2 1.0
C4A A:CLA404 3.0 93.2 1.0
C4B A:CLA404 3.1 93.2 1.0
C1D A:CLA404 3.1 93.2 1.0
C4C A:CLA404 3.1 93.2 1.0
C1C A:CLA404 3.1 93.2 1.0
C1A A:CLA404 3.2 93.2 1.0
CHB A:CLA404 3.3 93.2 1.0
CHD A:CLA404 3.4 93.2 1.0
CHC A:CLA404 3.5 93.2 1.0
CHA A:CLA404 3.6 93.2 1.0
CD2 A:HIS198 3.7 91.3 1.0
CE1 A:HIS198 4.0 91.3 1.0
CBB D:CLA408 4.1 89.5 1.0
CE A:MET183 4.2 91.9 1.0
C2B A:CLA404 4.3 93.2 1.0
C3B A:CLA404 4.3 93.2 1.0
C2D A:CLA404 4.3 93.2 1.0
C3D A:CLA404 4.4 93.2 1.0
C3C A:CLA404 4.4 93.2 1.0
C2C A:CLA404 4.4 93.2 1.0
C3A A:CLA404 4.4 93.2 1.0
C2A A:CLA404 4.5 93.2 1.0
CG A:HIS198 4.9 91.3 1.0

Magnesium binding site 2 out of 35 in 7nhp

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Magnesium binding site 2 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg405

b:96.1
occ:1.00
MG A:CLA405 0.0 96.1 1.0
NB A:CLA405 2.0 96.1 1.0
ND A:CLA405 2.0 96.1 1.0
NC A:CLA405 2.1 96.1 1.0
NA A:CLA405 2.1 96.1 1.0
C1B A:CLA405 2.9 96.1 1.0
C4A A:CLA405 3.0 96.1 1.0
C4D A:CLA405 3.0 96.1 1.0
C1D A:CLA405 3.1 96.1 1.0
C4C A:CLA405 3.1 96.1 1.0
C4B A:CLA405 3.1 96.1 1.0
C1C A:CLA405 3.1 96.1 1.0
C1A A:CLA405 3.2 96.1 1.0
CHB A:CLA405 3.3 96.1 1.0
CHD A:CLA405 3.4 96.1 1.0
CHC A:CLA405 3.5 96.1 1.0
CHA A:CLA405 3.5 96.1 1.0
C2B A:CLA405 4.2 96.1 1.0
C2D A:CLA405 4.3 96.1 1.0
C3D A:CLA405 4.3 96.1 1.0
C3B A:CLA405 4.3 96.1 1.0
C3A A:CLA405 4.3 96.1 1.0
C3C A:CLA405 4.3 96.1 1.0
C2C A:CLA405 4.3 96.1 1.0
C2A A:CLA405 4.5 96.1 1.0
CBB A:PHO403 4.7 93.7 1.0
CG2 A:THR179 4.9 91.4 1.0
CBD A:CLA405 5.0 96.1 1.0

Magnesium binding site 3 out of 35 in 7nhp

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Magnesium binding site 3 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg406

b:95.6
occ:1.00
MG A:CLA406 0.0 95.6 1.0
NB A:CLA406 2.0 95.6 1.0
ND A:CLA406 2.0 95.6 1.0
NA A:CLA406 2.1 95.6 1.0
NC A:CLA406 2.1 95.6 1.0
C4D A:CLA406 3.0 95.6 1.0
C1B A:CLA406 3.0 95.6 1.0
C4A A:CLA406 3.0 95.6 1.0
C1C A:CLA406 3.0 95.6 1.0
C4B A:CLA406 3.1 95.6 1.0
C4C A:CLA406 3.1 95.6 1.0
C1A A:CLA406 3.1 95.6 1.0
C1D A:CLA406 3.1 95.6 1.0
CHB A:CLA406 3.4 95.6 1.0
CHC A:CLA406 3.4 95.6 1.0
CHA A:CLA406 3.5 95.6 1.0
CHD A:CLA406 3.5 95.6 1.0
CBB D:PHO407 4.2 91.9 1.0
C2B A:CLA406 4.3 95.6 1.0
C2C A:CLA406 4.3 95.6 1.0
C3B A:CLA406 4.3 95.6 1.0
C3D A:CLA406 4.3 95.6 1.0
C3C A:CLA406 4.4 95.6 1.0
C2D A:CLA406 4.4 95.6 1.0
C3A A:CLA406 4.4 95.6 1.0
C2A A:CLA406 4.4 95.6 1.0
CD1 D:ILE178 4.5 93.3 1.0
CBD A:CLA406 5.0 95.6 1.0

Magnesium binding site 4 out of 35 in 7nhp

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Magnesium binding site 4 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg407

b:109.0
occ:1.00
MG A:CLA407 0.0 109.0 1.0
NB A:CLA407 2.0 109.0 1.0
ND A:CLA407 2.0 109.0 1.0
NC A:CLA407 2.1 109.0 1.0
NA A:CLA407 2.1 109.0 1.0
CE1 A:HIS118 2.9 98.6 1.0
C1B A:CLA407 2.9 109.0 1.0
C4D A:CLA407 2.9 109.0 1.0
NE2 A:HIS118 2.9 98.6 1.0
C4A A:CLA407 3.1 109.0 1.0
C4B A:CLA407 3.1 109.0 1.0
C1C A:CLA407 3.1 109.0 1.0
C1D A:CLA407 3.1 109.0 1.0
C4C A:CLA407 3.1 109.0 1.0
C1A A:CLA407 3.2 109.0 1.0
CHB A:CLA407 3.3 109.0 1.0
CHC A:CLA407 3.5 109.0 1.0
CHA A:CLA407 3.5 109.0 1.0
CHD A:CLA407 3.5 109.0 1.0
ND1 A:HIS118 4.1 98.6 1.0
C2B A:CLA407 4.2 109.0 1.0
CD2 A:HIS118 4.2 98.6 1.0
C3D A:CLA407 4.2 109.0 1.0
CG1 I:VAL8 4.3 116.4 1.0
C3B A:CLA407 4.3 109.0 1.0
CG2 I:VAL12 4.3 116.1 1.0
C2D A:CLA407 4.3 109.0 1.0
C2C A:CLA407 4.4 109.0 1.0
C3C A:CLA407 4.4 109.0 1.0
C3A A:CLA407 4.4 109.0 1.0
C2A A:CLA407 4.5 109.0 1.0
CG A:HIS118 4.8 98.6 1.0
CBD A:CLA407 4.9 109.0 1.0

Magnesium binding site 5 out of 35 in 7nhp

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Magnesium binding site 5 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:108.0
occ:1.00
MG B:CLA601 0.0 108.0 1.0
NB B:CLA601 2.0 108.0 1.0
ND B:CLA601 2.0 108.0 1.0
NA B:CLA601 2.0 108.0 1.0
NC B:CLA601 2.1 108.0 1.0
C4A B:CLA601 2.8 108.0 1.0
C1B B:CLA601 3.0 108.0 1.0
C4D B:CLA601 3.0 108.0 1.0
C1D B:CLA601 3.0 108.0 1.0
C4B B:CLA601 3.1 108.0 1.0
C1C B:CLA601 3.1 108.0 1.0
C4C B:CLA601 3.1 108.0 1.0
CHB B:CLA601 3.2 108.0 1.0
C1A B:CLA601 3.2 108.0 1.0
CHD B:CLA601 3.4 108.0 1.0
CHC B:CLA601 3.5 108.0 1.0
CHA B:CLA601 3.6 108.0 1.0
CMA B:CLA601 3.7 108.0 1.0
O B:TRP185 3.8 103.6 1.0
C3A B:CLA601 4.0 108.0 1.0
C2B B:CLA601 4.2 108.0 1.0
C2D B:CLA601 4.2 108.0 1.0
C3B B:CLA601 4.2 108.0 1.0
C3D B:CLA601 4.3 108.0 1.0
C3C B:CLA601 4.3 108.0 1.0
C2C B:CLA601 4.4 108.0 1.0
C2A B:CLA601 4.4 108.0 1.0
CBB B:CLA602 4.9 93.4 1.0

Magnesium binding site 6 out of 35 in 7nhp

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Magnesium binding site 6 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:93.4
occ:1.00
MG B:CLA602 0.0 93.4 1.0
NB B:CLA602 2.0 93.4 1.0
ND B:CLA602 2.0 93.4 1.0
NC B:CLA602 2.1 93.4 1.0
NA B:CLA602 2.1 93.4 1.0
ND1 B:HIS201 2.8 88.9 1.0
C1B B:CLA602 3.0 93.4 1.0
C4D B:CLA602 3.0 93.4 1.0
C4A B:CLA602 3.0 93.4 1.0
C4B B:CLA602 3.1 93.4 1.0
C1D B:CLA602 3.1 93.4 1.0
C1C B:CLA602 3.1 93.4 1.0
C4C B:CLA602 3.2 93.4 1.0
C1A B:CLA602 3.2 93.4 1.0
CE1 B:HIS201 3.2 88.9 1.0
CHB B:CLA602 3.3 93.4 1.0
CHC B:CLA602 3.5 93.4 1.0
CHD B:CLA602 3.5 93.4 1.0
CHA B:CLA602 3.5 93.4 1.0
CG B:HIS201 3.8 88.9 1.0
CZ H:PHE41 4.0 97.0 1.0
C2B B:CLA602 4.3 93.4 1.0
NE2 B:HIS201 4.3 88.9 1.0
C2D B:CLA602 4.3 93.4 1.0
C3B B:CLA602 4.3 93.4 1.0
C3D B:CLA602 4.3 93.4 1.0
CB B:HIS201 4.3 88.9 1.0
C2C B:CLA602 4.4 93.4 1.0
C3C B:CLA602 4.4 93.4 1.0
C3A B:CLA602 4.4 93.4 1.0
CE2 H:PHE41 4.5 97.0 1.0
C2A B:CLA602 4.5 93.4 1.0
CD2 B:HIS201 4.6 88.9 1.0
CE2 B:PHE190 4.6 96.8 1.0
CBD B:CLA602 5.0 93.4 1.0

Magnesium binding site 7 out of 35 in 7nhp

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Magnesium binding site 7 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg603

b:91.9
occ:1.00
MG B:CLA603 0.0 91.9 1.0
NB B:CLA603 2.0 91.9 1.0
ND B:CLA603 2.0 91.9 1.0
NC B:CLA603 2.1 91.9 1.0
NA B:CLA603 2.1 91.9 1.0
C4D B:CLA603 3.0 91.9 1.0
C1B B:CLA603 3.0 91.9 1.0
C4A B:CLA603 3.0 91.9 1.0
NE2 B:HIS202 3.1 89.2 1.0
C4B B:CLA603 3.1 91.9 1.0
C1C B:CLA603 3.1 91.9 1.0
C4C B:CLA603 3.1 91.9 1.0
C1D B:CLA603 3.1 91.9 1.0
C1A B:CLA603 3.2 91.9 1.0
CHB B:CLA603 3.4 91.9 1.0
CHC B:CLA603 3.4 91.9 1.0
CHD B:CLA603 3.5 91.9 1.0
CHA B:CLA603 3.5 91.9 1.0
CD2 B:HIS202 3.9 89.2 1.0
CE1 B:HIS202 4.1 89.2 1.0
C3D B:CLA603 4.3 91.9 1.0
C2B B:CLA603 4.3 91.9 1.0
C3B B:CLA603 4.3 91.9 1.0
C2D B:CLA603 4.3 91.9 1.0
C2C B:CLA603 4.4 91.9 1.0
C3C B:CLA603 4.4 91.9 1.0
C3A B:CLA603 4.4 91.9 1.0
C7 B:CLA605 4.4 92.2 1.0
C6 B:CLA605 4.4 92.2 1.0
C2A B:CLA603 4.5 91.9 1.0
C8 B:CLA605 4.6 92.2 1.0
C2 B:CLA603 4.7 91.9 1.0
C9 B:CLA605 4.8 92.2 1.0
CBD B:CLA603 5.0 91.9 1.0
C10 B:CLA605 5.0 92.2 1.0

Magnesium binding site 8 out of 35 in 7nhp

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Magnesium binding site 8 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg604

b:90.7
occ:1.00
MG B:CLA604 0.0 90.7 1.0
NB B:CLA604 2.0 90.7 1.0
ND B:CLA604 2.0 90.7 1.0
NA B:CLA604 2.1 90.7 1.0
NC B:CLA604 2.1 90.7 1.0
NE2 B:HIS455 2.9 76.8 1.0
C4D B:CLA604 3.0 90.7 1.0
C1B B:CLA604 3.0 90.7 1.0
C4A B:CLA604 3.0 90.7 1.0
C4B B:CLA604 3.0 90.7 1.0
C1C B:CLA604 3.1 90.7 1.0
C1D B:CLA604 3.1 90.7 1.0
C4C B:CLA604 3.1 90.7 1.0
C1A B:CLA604 3.2 90.7 1.0
CHB B:CLA604 3.4 90.7 1.0
CHC B:CLA604 3.4 90.7 1.0
CHD B:CLA604 3.5 90.7 1.0
CHA B:CLA604 3.5 90.7 1.0
CE1 B:HIS455 3.7 76.8 1.0
CD2 B:HIS455 3.8 76.8 1.0
C14 B:CLA612 3.8 91.4 1.0
C15 B:CLA612 3.8 91.4 1.0
C2B B:CLA604 4.2 90.7 1.0
C3B B:CLA604 4.3 90.7 1.0
C13 B:CLA612 4.3 91.4 1.0
C3D B:CLA604 4.3 90.7 1.0
C3A B:CLA604 4.3 90.7 1.0
C2D B:CLA604 4.3 90.7 1.0
C2C B:CLA604 4.4 90.7 1.0
C3C B:CLA604 4.4 90.7 1.0
C2A B:CLA604 4.5 90.7 1.0
ND1 B:HIS455 4.8 76.8 1.0
CG B:HIS455 4.8 76.8 1.0
CBD B:CLA604 5.0 90.7 1.0

Magnesium binding site 9 out of 35 in 7nhp

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Magnesium binding site 9 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg605

b:92.2
occ:1.00
MG B:CLA605 0.0 92.2 1.0
NB B:CLA605 2.0 92.2 1.0
ND B:CLA605 2.0 92.2 1.0
NC B:CLA605 2.1 92.2 1.0
NA B:CLA605 2.1 92.2 1.0
C4D B:CLA605 2.9 92.2 1.0
C1B B:CLA605 3.0 92.2 1.0
CE1 B:HIS100 3.0 91.5 1.0
C4A B:CLA605 3.0 92.2 1.0
C4B B:CLA605 3.0 92.2 1.0
C1C B:CLA605 3.1 92.2 1.0
C1D B:CLA605 3.1 92.2 1.0
C4C B:CLA605 3.1 92.2 1.0
C1A B:CLA605 3.2 92.2 1.0
CHB B:CLA605 3.4 92.2 1.0
CHC B:CLA605 3.4 92.2 1.0
CHA B:CLA605 3.5 92.2 1.0
CHD B:CLA605 3.5 92.2 1.0
NE2 B:HIS100 3.6 91.5 1.0
ND1 B:HIS100 4.2 91.5 1.0
C2B B:CLA605 4.2 92.2 1.0
C3D B:CLA605 4.3 92.2 1.0
C3B B:CLA605 4.3 92.2 1.0
C2D B:CLA605 4.3 92.2 1.0
C2C B:CLA605 4.3 92.2 1.0
C3C B:CLA605 4.4 92.2 1.0
C3A B:CLA605 4.4 92.2 1.0
C6 B:CLA604 4.4 90.7 1.0
C2A B:CLA605 4.5 92.2 1.0
CD2 B:HIS100 4.9 91.5 1.0
CBD B:CLA605 4.9 92.2 1.0
C5 B:CLA604 4.9 90.7 1.0

Magnesium binding site 10 out of 35 in 7nhp

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Magnesium binding site 10 out of 35 in the Structure of Psii-I (Psii with PSB27, PSB28, and PSB34)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Psii-I (Psii with PSB27, PSB28, and PSB34) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg606

b:96.8
occ:1.00
MG B:CLA606 0.0 96.8 1.0
NB B:CLA606 2.0 96.8 1.0
ND B:CLA606 2.0 96.8 1.0
NA B:CLA606 2.1 96.8 1.0
NC B:CLA606 2.1 96.8 1.0
CD2 B:HIS157 2.9 93.1 1.0
C1B B:CLA606 3.0 96.8 1.0
C4D B:CLA606 3.0 96.8 1.0
C4B B:CLA606 3.0 96.8 1.0
C4A B:CLA606 3.1 96.8 1.0
C1D B:CLA606 3.1 96.8 1.0
C1C B:CLA606 3.1 96.8 1.0
C4C B:CLA606 3.1 96.8 1.0
C1A B:CLA606 3.2 96.8 1.0
CHB B:CLA606 3.4 96.8 1.0
CHC B:CLA606 3.4 96.8 1.0
CHD B:CLA606 3.5 96.8 1.0
CHA B:CLA606 3.5 96.8 1.0
NE2 B:HIS157 3.7 93.1 1.0
CG B:HIS157 3.9 93.1 1.0
C2B B:CLA606 4.2 96.8 1.0
C3B B:CLA606 4.2 96.8 1.0
C3D B:CLA606 4.3 96.8 1.0
C2D B:CLA606 4.3 96.8 1.0
CB B:HIS157 4.3 93.1 1.0
C3C B:CLA606 4.4 96.8 1.0
C2C B:CLA606 4.4 96.8 1.0
C3A B:CLA606 4.4 96.8 1.0
C2A B:CLA606 4.5 96.8 1.0
CE1 B:HIS157 4.8 93.1 1.0
ND1 B:HIS157 4.9 93.1 1.0

Reference:

J.Zabret, S.Bohn, S.K.Schuller, O.Arnolds, M.Moller, J.Meier-Credo, P.Liauw, A.Chan, E.Tajkhorshid, J.D.Langer, R.Stoll, A.Krieger-Liszkay, B.D.Engel, T.Rudack, J.M.Schuller, M.M.Nowaczyk. Structural Insights Into Photosystem II Assembly. Nat.Plants V. 7 524 2021.
ISSN: ESSN 2055-0278
PubMed: 33846594
DOI: 10.1038/S41477-021-00895-0
Page generated: Mon Jul 12 14:40:19 2021

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