Magnesium in PDB 7nvv: Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3)

All present enzymatic activity of Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3):
3.6.4.12;

The structure of Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3) also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3) (pdb code 7nvv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3), PDB code: 7nvv:

Magnesium binding site 1 out of 1 in the Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Xpb-Containing Part of Tfiih in A Post-Translocated State (with Adp- BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ 7:Mg902 b:14.2 occ:1.00 F1 7:BEF903 2.0 18.4 1.0 O2B 7:ADP901 2.0 17.6 1.0 PB 7:ADP901 3.2 17.6 1.0 BE 7:BEF903 3.2 18.4 1.0 O2A 7:ADP901 3.4 17.6 1.0 O3B 7:ADP901 3.4 17.6 1.0 OD1 7:ASP441 3.8 19.8 1.0 OG 7:SER347 3.9 16.6 1.0 OD2 7:ASP441 4.0 19.8 1.0 O3A 7:ADP901 4.0 17.6 1.0 PA 7:ADP901 4.1 17.6 1.0 F2 7:BEF903 4.2 18.4 1.0 CG 7:ASP441 4.3 19.8 1.0 F3 7:BEF903 4.4 18.4 1.0 O1B 7:ADP901 4.4 17.6 1.0 CE 7:LYS346 4.5 15.7 1.0 O1A 7:ADP901 4.5 17.6 1.0 OE2 7:GLU442 4.6 21.5 1.0 NH2 7:ARG645 4.7 18.9 1.0 CA 7:SER614 4.7 21.7 1.0 CB 7:LYS346 4.7 15.7 1.0 OG 7:SER614 4.9 21.7 1.0 N 7:SER347 4.9 16.6 1.0

S.Aibara, S.Schilbach, P.Cramer. Structures of Mammalian Rna Polymerase II Pre-Initiation Complexes. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 33902107
DOI: 10.1038/S41586-021-03554-8