Magnesium in PDB 7o12: Abc Transporter Nosdfy, Amppnp-Bound in Gdn

The binding sites of Magnesium atom in the Abc Transporter Nosdfy, Amppnp-Bound in Gdn (pdb code 7o12). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Abc Transporter Nosdfy, Amppnp-Bound in Gdn, PDB code: 7o12:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Abc Transporter Nosdfy, Amppnp-Bound in Gdn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Abc Transporter Nosdfy, Amppnp-Bound in Gdn within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:185.3 occ:1.00 O2G B:ANP402 2.1 186.2 1.0 O2B B:ANP402 2.1 186.2 1.0 OG1 B:THR43 2.1 163.6 1.0 O3G B:ANP402 2.3 186.2 1.0 OE2 B:GLU81 2.5 161.2 1.0 PG B:ANP402 2.5 186.2 1.0 PB B:ANP402 3.1 186.2 1.0 N3B B:ANP402 3.2 186.2 1.0 CB B:THR43 3.5 163.6 1.0 OD1 B:ASP153 3.5 159.0 1.0 N B:THR43 3.5 163.6 1.0 O1B B:ANP402 3.7 186.2 1.0 CD B:GLU81 3.7 161.2 1.0 OD2 B:ASP153 3.8 159.0 1.0 O1A B:ANP402 3.8 186.2 1.0 O1G B:ANP402 3.9 186.2 1.0 CB B:LYS42 3.9 163.5 1.0 CA B:THR43 4.0 163.6 1.0 CG B:ASP153 4.1 159.0 1.0 CE B:LYS42 4.3 163.5 1.0 C B:LYS42 4.3 163.5 1.0 OE1 B:GLU81 4.4 161.2 1.0 O3A B:ANP402 4.4 186.2 1.0 CG2 B:THR43 4.4 163.6 1.0 PA B:ANP402 4.5 186.2 1.0 NZ B:LYS42 4.6 163.5 1.0 CA B:LYS42 4.6 163.5 1.0 O2A B:ANP402 4.7 186.2 1.0 CG B:GLU81 4.7 161.2 1.0 N B:LYS42 4.8 163.5 1.0 CG B:LYS42 4.9 163.5 1.0

Magnesium binding site 2 out of 3 in the Abc Transporter Nosdfy, Amppnp-Bound in Gdn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Abc Transporter Nosdfy, Amppnp-Bound in Gdn within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:178.4 occ:1.00 O2G C:ANP402 2.1 176.4 1.0 O2B C:ANP402 2.1 176.4 1.0 OG1 C:THR43 2.1 156.5 1.0 O3G C:ANP402 2.2 176.4 1.0 OE2 C:GLU81 2.3 165.9 1.0 PG C:ANP402 2.5 176.4 1.0 PB C:ANP402 3.2 176.4 1.0 N3B C:ANP402 3.3 176.4 1.0 CD C:GLU81 3.5 165.9 1.0 OD2 C:ASP153 3.5 154.7 1.0 CB C:THR43 3.5 156.5 1.0 N C:THR43 3.7 156.5 1.0 O1B C:ANP402 3.7 176.4 1.0 OD1 C:ASP153 3.8 154.7 1.0 O1G C:ANP402 3.8 176.4 1.0 O1A C:ANP402 4.0 176.4 1.0 CA C:THR43 4.1 156.5 1.0 CG C:ASP153 4.1 154.7 1.0 CB C:LYS42 4.2 159.7 1.0 OE1 C:GLU81 4.3 165.9 1.0 CG C:GLU81 4.4 165.9 1.0 CG2 C:THR43 4.4 156.5 1.0 O3A C:ANP402 4.5 176.4 1.0 C C:LYS42 4.6 159.7 1.0 PA C:ANP402 4.7 176.4 1.0 CE C:LYS42 4.7 159.7 1.0 OE2 C:GLU154 4.8 157.6 1.0 CA C:LYS42 4.9 159.7 1.0 O2A C:ANP402 4.9 176.4 1.0 SG C:CYS184 5.0 144.8 1.0

Magnesium binding site 3 out of 3 in the Abc Transporter Nosdfy, Amppnp-Bound in Gdn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Abc Transporter Nosdfy, Amppnp-Bound in Gdn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:164.9 occ:1.00 O A:HOH601 1.7 160.3 1.0 OD1 A:ASP359 1.9 155.1 1.0 OD1 A:ASN361 2.2 156.3 1.0 OD1 A:ASP363 2.2 156.2 1.0 OD1 A:ASP367 2.5 153.4 1.0 O A:ASN361 2.6 156.3 1.0 O A:LEU365 2.9 143.6 1.0 CG A:ASN361 3.1 156.3 1.0 CG A:ASP359 3.2 155.1 1.0 CG A:ASP363 3.3 156.2 1.0 CG A:ASP367 3.5 153.4 1.0 ND2 A:ASN361 3.6 156.3 1.0 OD2 A:ASP363 3.7 156.2 1.0 C A:ASN361 3.7 156.3 1.0 C A:LEU365 3.9 143.6 1.0 OD2 A:ASP367 4.0 153.4 1.0 N A:ASN361 4.0 156.3 1.0 OD2 A:ASP359 4.1 155.1 1.0 CB A:ASP359 4.1 155.1 1.0 CA A:ASP359 4.1 155.1 1.0 N A:ARG360 4.2 154.0 1.0 CB A:ASN361 4.2 156.3 1.0 O A:GLY366 4.2 146.1 1.0 CA A:ASN361 4.2 156.3 1.0 C A:GLY366 4.3 146.1 1.0 N A:ASP363 4.3 156.2 1.0 C A:ASP359 4.4 155.1 1.0 O A:ASP363 4.6 156.2 1.0 CB A:ASP363 4.6 156.2 1.0 N A:ASP367 4.6 153.4 1.0 CA A:GLY366 4.8 146.1 1.0 CB A:ASP367 4.8 153.4 1.0 CA A:LEU365 4.8 143.6 1.0 N A:GLY366 4.8 146.1 1.0 CA A:ASP367 4.8 153.4 1.0 N A:LEU365 4.8 143.6 1.0 C A:ARG360 4.8 154.0 1.0 CB A:LEU365 4.8 143.6 1.0 CA A:ASP363 4.8 156.2 1.0 C A:ASP363 4.9 156.2 1.0 N A:ASN362 4.9 152.9 1.0

C.Muller, L.Zhang, S.Zipfel, A.Topitsch, M.Lutz, J.Eckert, B.Prasser, M.Chami, W.Lu, J.Du, O.Einsle. Molecular Interplay of An Assembly Machinery For Nitrous Oxide Reductase. Nature V. 608 626 2022.
ISSN: ESSN 1476-4687
PubMed: 35896743
DOI: 10.1038/S41586-022-05015-2