Magnesium in PDB 7o6s: Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine

The structure of Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine, PDB code: 7o6s was solved by M.Gardonyi, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.62 / 1.58
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	57.63, 57.63, 159.184, 90, 90, 120
R / Rfree (%)	19 / 22.5

The structure of Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine (pdb code 7o6s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine, PDB code: 7o6s:

Magnesium binding site 1 out of 1 in the Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1, 3-Benzodioxol-5-Ylmethyl)Cyclopentanamine within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:29.8 occ:0.64 O B:HOH362 1.9 32.5 0.8 O B:HOH363 2.0 29.0 0.7 O B:HOH343 2.0 22.4 0.6 O B:HOH359 2.1 30.3 0.8 O B:HOH309 2.1 21.4 0.6 HZ2 B:LYS140 3.2 31.3 1.0 O B:SER134 4.0 28.7 1.0 OD1 B:ASN135 4.0 34.1 1.0 NZ B:LYS140 4.0 26.1 1.0 HZ1 B:LYS140 4.0 31.3 1.0 O B:GLN132 4.1 30.3 1.0 O B:HOH321 4.2 33.0 1.0 HE3 B:LYS140 4.5 31.0 1.0 O B:ILE131 4.5 30.4 1.0 HZ3 B:LYS140 4.6 31.3 1.0 HD2 B:LYS140 4.7 34.3 1.0 HA B:ASN135 4.8 41.6 1.0 C B:GLN132 4.8 30.1 1.0 CE B:LYS140 4.8 25.8 1.0 HA B:HIS133 4.9 33.3 1.0

M.Gardonyi, A.Heine, G.Klebe. Crystal Structure of A Shortened Ipgc Variant in Complex with N-(2H-1,3-Benzodioxol-5-Ylmethyl)Cyclopentanamine To Be Published.