Magnesium in PDB 7odg: Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State

Enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State

All present enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State:
1.12.99.6;

Protein crystallography data

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State, PDB code: 7odg was solved by A.Schmidt, J.Kalms, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.00 / 1.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.467, 95.76, 120.633, 90, 90, 90
R / Rfree (%) 16.2 / 18.8

Other elements in 7odg:

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Nickel (Ni) 1 atom
Iron (Fe) 14 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State (pdb code 7odg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State, PDB code: 7odg:

Magnesium binding site 1 out of 1 in 7odg

Go back to Magnesium Binding Sites List in 7odg
Magnesium binding site 1 out of 1 in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg1002

b:16.6
occ:1.00
 O L:HOH1105 2.0 15.5 1.0
O L:HOH1132 2.1 13.4 1.0
O L:HOH1110 2.1 15.9 1.0
O L:CYS549 2.1 14.1 1.0
OE2 L:GLU56 2.2 16.6 1.0
NE2 L:HIS603 2.3 14.1 1.0
CD L:GLU56 3.1 17.4 1.0
CE1 L:HIS603 3.3 14.5 1.0
C L:CYS549 3.3 13.4 1.0
CD2 L:HIS603 3.3 14.5 1.0
OE1 L:GLU56 3.4 18.6 1.0
N L:CYS549 3.8 13.9 1.0
OE1 L:GLU347 4.0 21.6 1.0
OE2 L:GLU347 4.0 17.9 1.0
CA L:CYS549 4.1 13.7 1.0
OE1 L:GLN548 4.1 18.6 1.0
NZ L:LYS400 4.2 17.3 1.0
O L:HOH1131 4.4 16.1 1.0
N L:VAL550 4.4 13.4 1.0
O L:HOH1284 4.4 14.4 1.0
CB L:CYS549 4.4 15.2 1.0
ND1 L:HIS603 4.4 14.5 1.0
CD L:GLU347 4.4 18.5 1.0
CG L:HIS603 4.5 14.7 1.0
CG L:GLU56 4.5 16.9 1.0
CE L:LYS400 4.6 17.5 1.0
CD L:LYS400 4.6 16.6 1.0
CA L:VAL550 4.7 14.2 1.0
C L:GLN548 4.8 14.8 1.0

Reference:

E.Siebert, A.Schmidt, S.Frielingsdorf, J.Kalms, U.Kuhlmann, O.Lenz, P.Scheerer, I.Zebger, P.Hildebrandt. Resonance Raman Spectroscopic Analysis of the Iron-Sulfur Cluster Redox Chain of the Ralstonia Eutropha Membrane-Bound [Nife]-Hydrogenase J Raman Spectrosc 2021.
ISSN: ISSN 0377-0486
DOI: 10.1002/JRS.6163
Page generated: Mon Jul 12 14:52:39 2021

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