Magnesium in PDB 7ok0: Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A

Enzymatic activity of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A

All present enzymatic activity of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A:
2.7.7.6;

Other elements in 7ok0:

The structure of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A also contains other interesting chemical elements:

Iron (Fe) 3 atoms
Zinc (Zn) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A (pdb code 7ok0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A, PDB code: 7ok0:

Magnesium binding site 1 out of 1 in 7ok0

Go back to Magnesium Binding Sites List in 7ok0
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:67.7
occ:1.00
OD1 A:ASP456 2.0 60.1 1.0
OD2 A:ASP460 2.1 59.0 1.0
OD1 A:ASP460 2.1 59.0 1.0
OD2 A:ASP458 2.1 59.8 1.0
OD1 A:ASP458 2.1 59.8 1.0
O A:ASP456 2.2 60.1 1.0
CG A:ASP458 2.2 59.8 1.0
CG A:ASP460 2.3 59.0 1.0
C A:ASP456 3.2 60.1 1.0
CG A:ASP456 3.2 60.1 1.0
N A:ASP458 3.4 59.8 1.0
CB A:ASP458 3.5 59.8 1.0
CB A:ASP460 3.7 59.0 1.0
N A:ASP456 3.8 60.1 1.0
CA A:ASP458 3.9 59.8 1.0
CA A:ASP456 3.9 60.1 1.0
OD2 A:ASP456 4.0 60.1 1.0
N A:ASP460 4.1 59.0 1.0
CB A:ASP456 4.1 60.1 1.0
N A:PHE457 4.2 57.0 1.0
N A:GLY459 4.3 58.7 1.0
C A:ASP458 4.3 59.8 1.0
CA A:ASP460 4.4 59.0 1.0
C A:PHE457 4.4 57.0 1.0
CA A:PHE457 4.6 57.0 1.0
C A:GLY459 5.0 58.7 1.0

Reference:

S.Pilotto, T.Fouqueau, N.Lukoyanova, C.Sheppard, S.Lucas-Staat, L.M.Diaz-Santin, D.Matelska, D.Prangishvili, A.C.M.Cheung, F.Werner. Structural Basis of Rna Polymerase Inhibition By Viral and Host Factors Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Thu Oct 3 03:08:33 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy