Magnesium in PDB 7ol3: Human ATL1 N417INS (Catalytic Core)

Protein crystallography data

The structure of Human ATL1 N417INS (Catalytic Core), PDB code: 7ol3 was solved by C.M.Kelly, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.43 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.09, 115.003, 184.008, 90, 90, 90
R / Rfree (%) 17.3 / 22

Other elements in 7ol3:

The structure of Human ATL1 N417INS (Catalytic Core) also contains other interesting chemical elements:

Fluorine (F) 8 atoms
Aluminium (Al) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human ATL1 N417INS (Catalytic Core) (pdb code 7ol3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human ATL1 N417INS (Catalytic Core), PDB code: 7ol3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7ol3

Go back to Magnesium Binding Sites List in 7ol3
Magnesium binding site 1 out of 2 in the Human ATL1 N417INS (Catalytic Core)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human ATL1 N417INS (Catalytic Core) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:13.1
occ:1.00
O1B A:GDP501 2.0 12.3 1.0
F3 A:ALF502 2.0 13.5 1.0
OG1 A:THR120 2.1 15.5 1.0
O A:HOH685 2.1 10.7 1.0
OG A:SER81 2.1 10.2 1.0
O A:HOH741 2.1 13.2 1.0
CB A:THR120 3.0 14.4 1.0
CB A:SER81 3.2 14.2 1.0
PB A:GDP501 3.2 13.6 1.0
O3B A:GDP501 3.4 13.9 1.0
AL A:ALF502 3.5 15.3 1.0
F2 A:ALF502 3.6 13.8 1.0
N A:SER81 3.8 12.9 1.0
OD2 A:ASP146 3.9 12.1 1.0
N A:THR120 4.0 13.6 1.0
CG2 A:THR120 4.0 13.2 1.0
CA A:SER81 4.1 12.0 1.0
CA A:THR120 4.1 12.4 1.0
O A:HOH642 4.1 14.6 1.0
OD1 A:ASP146 4.2 13.0 1.0
O2B A:GDP501 4.2 12.1 1.0
F1 A:ALF502 4.2 11.7 1.0
O A:THR147 4.3 13.2 1.0
O2A A:GDP501 4.3 11.4 1.0
O A:SER111 4.3 16.8 1.0
O3A A:GDP501 4.4 11.4 1.0
CG A:ASP146 4.4 14.2 1.0
O1A A:GDP501 4.5 14.1 1.0
O A:HOH618 4.5 11.5 1.0
PA A:GDP501 4.6 14.3 1.0
CB A:LYS80 4.8 12.7 1.0
C A:LYS80 4.8 13.4 1.0
NZ A:LYS80 5.0 10.2 1.0

Magnesium binding site 2 out of 2 in 7ol3

Go back to Magnesium Binding Sites List in 7ol3
Magnesium binding site 2 out of 2 in the Human ATL1 N417INS (Catalytic Core)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human ATL1 N417INS (Catalytic Core) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:15.8
occ:1.00
F4 B:ALF502 2.0 15.6 1.0
OG B:SER81 2.0 13.0 1.0
O2B B:GDP501 2.0 14.4 1.0
O B:HOH690 2.1 14.6 1.0
OG1 B:THR120 2.1 14.2 1.0
O B:HOH719 2.2 12.4 1.0
CB B:SER81 3.1 11.9 1.0
CB B:THR120 3.1 13.5 1.0
PB B:GDP501 3.2 14.8 1.0
O3B B:GDP501 3.4 14.4 1.0
AL B:ALF502 3.5 14.2 1.0
F2 B:ALF502 3.5 15.8 1.0
N B:SER81 3.7 13.9 1.0
OD2 B:ASP146 3.9 15.0 1.0
CA B:SER81 4.0 14.2 1.0
N B:THR120 4.0 15.2 1.0
O B:HOH635 4.1 14.5 1.0
CG2 B:THR120 4.2 14.8 1.0
CA B:THR120 4.2 16.6 1.0
OD1 B:ASP146 4.2 14.8 1.0
O1B B:GDP501 4.2 13.7 1.0
F1 B:ALF502 4.2 16.2 1.0
O B:SER111 4.2 16.9 1.0
O1A B:GDP501 4.3 13.7 1.0
O B:THR147 4.3 14.1 1.0
O3A B:GDP501 4.3 16.0 1.0
CG B:ASP146 4.4 17.5 1.0
O2A B:GDP501 4.5 15.0 1.0
PA B:GDP501 4.5 15.1 1.0
O B:HOH693 4.6 14.7 1.0
CB B:LYS80 4.7 11.7 1.0
C B:LYS80 4.8 15.0 1.0
CE B:LYS80 5.0 11.7 1.0
NZ B:LYS80 5.0 11.1 1.0

Reference:

C.M.Kelly, P.J.Zeiger, V.Narayanan, K.Ramsey, H.Sondermann. Human ATL1 N417INS (Catalytic Core) To Be Published.
Page generated: Sat Aug 21 16:47:40 2021

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