Magnesium in PDB 7oq4: Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase

Enzymatic activity of Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase

All present enzymatic activity of Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase:
2.7.7.6;

Other elements in 7oq4:

The structure of Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase also contains other interesting chemical elements:

Iron	(Fe)	3 atoms
Zinc	(Zn)	6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase (pdb code 7oq4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase, PDB code: 7oq4:

Magnesium binding site 1 out of 1 in 7oq4

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Magnesium Binding Sites List in 7oq4

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Atv Rnap Inhibitory Protein (Rip) Bound to the Dna-Binding Channel of the Host'S Rna Polymerase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg901 b:23.9 occ:1.00	OD2	A:ASP460	2.1	15.9	1.0
	O	A:ASP456	2.1	15.8	1.0
	CG	A:ASP460	2.2	15.9	1.0
	OD1	A:ASP460	2.3	15.9	1.0
	OD2	A:ASP458	2.3	17.0	1.0
	OD1	A:ASP456	2.5	15.8	1.0
	CG	A:ASP458	3.0	17.0	1.0
	N	A:ASP458	3.1	17.0	1.0
	C	A:ASP456	3.2	15.8	1.0
	CB	A:ASP458	3.2	17.0	1.0
	CB	A:ASP460	3.3	15.9	1.0
	CG	A:ASP456	3.6	15.8	1.0
	CA	A:ASP458	3.7	17.0	1.0
	N	A:ASP460	3.9	15.9	1.0
	OD1	A:ASP458	4.0	17.0	1.0
	N	A:PHE457	4.0	13.4	1.0
	CA	A:ASP456	4.1	15.8	1.0
	C	A:PHE457	4.1	13.4	1.0
	N	A:ASP456	4.1	15.8	1.0
	CA	A:ASP460	4.2	15.9	1.0
	CA	A:PHE457	4.3	13.4	1.0
	C	A:ASP458	4.3	17.0	1.0
	CB	A:ASP456	4.4	15.8	1.0
	OD2	A:ASP456	4.4	15.8	1.0
	N	A:GLY459	4.4	16.1	1.0
	O	A:ASP460	5.0	15.9	1.0

Reference:

S.Pilotto, T.Fouqueau, N.Lukoyanova, C.Sheppard, S.Lucas-Staat, L.M.Diaz-Santin, D.Matelska, D.Prangishvili, A.C.M.Cheung, F.Werner. Structural Basis of Rna Polymerase Inhibition By Viral and Host Factors Nat Commun 2021.
ISSN: ESSN 2041-1723

Page generated: Thu Oct 3 03:29:37 2024

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